View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11043_high_5 (Length: 560)
Name: NF11043_high_5
Description: NF11043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11043_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 447; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 71 - 543
Target Start/End: Complemental strand, 50505649 - 50505180
Alignment:
| Q |
71 |
tttaaaagtccgctgttatgcaatggtttcatcatgttttagataatgatttctatattccccatgaagccatgatatgttagtattttgtttagcttgt |
170 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50505649 |
tttaaaagtccgctgttatgcaatggtttcatcatgttttagataatgatttctatattccccatgaagccatgatatgttagtattttgtttagcttgt |
50505550 |
T |
|
| Q |
171 |
atttttcttatcagataatgcctttgcttattcctattagttatactaaatatttttgcaggatttgaggtgctttgttctcaatcttatttcacttcac |
270 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50505549 |
atttttcttatcagataatgcctttgcttattcctattagttatactaaatatttttgcaggatttgaggtgctttgttctcaatcttatttcacttcac |
50505450 |
T |
|
| Q |
271 |
ttcaagatcaagcctatacctatataagatgttcacaattaaatatgagctcgtcctatttggagtgtgaacattttcaacaactttccctttttgctaa |
370 |
Q |
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| T |
50505449 |
ttcaagatcaagcctatacctatataagatgttcacaattaaatatgagctcgtcctatttggaatgtgaacattttcaacaactttccctttttgctaa |
50505350 |
T |
|
| Q |
371 |
agaagttcgacatctgaattagttgatgatgaacggggaaaacctgatttgaatggataacctttgtaccagatctttggtttttatatgcatggttttg |
470 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50505349 |
agaagttcgacatctgaattagttg---atgaacggggaaaacctgatttgaatggttaacctttgtaccagatctttggtttttatatgcatggttttg |
50505253 |
T |
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| Q |
471 |
actaatttttctcgttctccagcttccacggttggagcatgaattgttacattgagagttgcatgctttatgt |
543 |
Q |
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| T |
50505252 |
actaatttttctcgttctccagcttccacggttggagcatgaattgttactttgagagttgcatgctttatgt |
50505180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 6 - 75
Target Start/End: Complemental strand, 50505751 - 50505682
Alignment:
| Q |
6 |
agcagcacagatcaatcactatcatacacgaacctaaaaatcaccgatatagtttatgcaatggttttaa |
75 |
Q |
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|||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50505751 |
agcaacacacatcaatcactatcatacacgaacctaaaaatcaccgatatagtttatgcaatggttttaa |
50505682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 225 - 470
Target Start/End: Original strand, 55280797 - 55281032
Alignment:
| Q |
225 |
tttgcaggatttgaggtgctttgttctcaatcttatttcacttcacttcaagatcaagcctatacctatataagatgttcacaattaaatat-gagctcg |
323 |
Q |
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| T |
55280797 |
tttgcaggatttgaagtgctttgtcttctctcttatttcacttcacttcaagatcaagcctata------taagatgttcccaattatttttcgagtttg |
55280890 |
T |
|
| Q |
324 |
tcctatttggagtgtgaacattttcaacaactttccctttttgctaaagaagttcgacatctgaattagttgatgatgaacggggaaaacctgatttgaa |
423 |
Q |
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|| | || | | |||| || ||| ||||||||||| |||| ||||| |||||| || | || || || ||||||| | ||||||||||||||| |
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| T |
55280891 |
tcttcttggaaatgtgcactctttgaacaactttcctttttagctaatgaagtttgaaacatgtatcggt----gatgaacaga-aaaacctgatttgaa |
55280985 |
T |
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| Q |
424 |
tggataacctttgtaccagatctttggtttttatatgcatggttttg |
470 |
Q |
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| T |
55280986 |
tggataacctttgtaccagatctttgctttttatatttatggttttg |
55281032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 196; Significance: 1e-106; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 97 - 394
Target Start/End: Original strand, 28733612 - 28733906
Alignment:
| Q |
97 |
tttcatcatgttttagataatgatttctatattccccatgaagccatgatatgttagtattttgtttagcttgtatttttcttatcagataatgcctttg |
196 |
Q |
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| T |
28733612 |
tttcatcatattttagataatgatttatatattccccatgaggccatgatatgttagtattttgttttgcttatatttttcttatcagataatgtctttg |
28733711 |
T |
|
| Q |
197 |
cttattcctattagttatactaaatatttttgcaggatttgaggtgctttgttctcaatcttatttcacttcacttcaagatcaagcctatacctatata |
296 |
Q |
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|||| ||||||| ||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28733712 |
tttatgcctattaattata---aacatttttgcaggatttgaagtgctttgttctcaatcttatttcacttcacttcaagatcaagcctatacctatata |
28733808 |
T |
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| Q |
297 |
agatgttcacaattaaatatgagctcgtcctatttggagtgtgaacattttcaacaactttccctttttgctaaagaagttcgacatctgaattagtt |
394 |
Q |
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| T |
28733809 |
agatgtttactgttaattatgagttcgtcctgctgggaatgtgaacattttcaacaacttttcctttttgctaaagaagtttgacatctgaattagtt |
28733906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 16 - 73
Target Start/End: Original strand, 28733499 - 28733556
Alignment:
| Q |
16 |
atcaatcactatcatacacgaacctaaaaatcaccgatatagtttatgcaatggtttt |
73 |
Q |
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||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| |
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| T |
28733499 |
atcaatcactatcatgcacgaacctaaaaatcaccaatatagtttatgcaatggtttt |
28733556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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