View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11043_low_1 (Length: 696)
Name: NF11043_low_1
Description: NF11043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11043_low_1 |
 | |
|
| [»] scaffold0341 (2 HSPs) |
| | |
|
Alignment Details
Target: scaffold0341 (Bit Score: 596; Significance: 0; HSPs: 2)
Name: scaffold0341
Description:
Target: scaffold0341; HSP #1
Raw Score: 596; E-Value: 0
Query Start/End: Original strand, 44 - 677
Target Start/End: Original strand, 538 - 1168
Alignment:
| Q |
44 |
ggtgttggtgatggtgatgatgacgacgatgatgaaggtgaatcttgtgtttgttgatagaaaagtgaattggtttcatatctcaaataacaactgggtc |
143 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
538 |
ggtgttggtgatggtgatgatgacg---atgatgaaggtgaatcttgagtttgttgatagaaaagtgaattggtttcatatctcaaataacaactgggtc |
634 |
T |
|
| Q |
144 |
taagaaatctaccacctatacccattctattgtcacaacaatttgggatttctttgatagatttatccaaacattcatcacacaatgtttcagacaaatc |
243 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
635 |
taagaaatctaccacctatacctattctattgtcacaacaatttgggatttctttgatagatttatccaaacattcatcacacaatgtttcagacaaatc |
734 |
T |
|
| Q |
244 |
aggtgtgcattgaacaagagcaaatatggtttgattattatttggaccaatcacatcatttcctacagcatatttaaggtcactttcccccgatgcagct |
343 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
735 |
aggtgtgcattgaacaagagcaaatatggtttgattattatttggaccaatcacatcacttcctacagcatatttaaggtcactttcccccgatgcagct |
834 |
T |
|
| Q |
344 |
atattttttaaattatacaacaaatttttcagccctttatcaaattcatcttcgacttcctttgttgcgttctgcaaattccatgcaatcatggcaggtc |
443 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
835 |
aaattttttaaattatacaacaaatttttcagccctttatcaaattcatcttcgacttcctttgttgcgttctgcaaattccatgcaatcatggcaggtc |
934 |
T |
|
| Q |
444 |
ccatttcattgataccaaatattgaacggtgtgaggaacgcaacatgcatttttcatcgtcgtaccatccaattgcttcttttcgattttgacaaagttg |
543 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
935 |
ccatttcattgataccaaatattaaacggtgtgaggaacgcaacatgcatttttcatcgtcgtaccatccaattgcttcttttcgattttgacaaagttg |
1034 |
T |
|
| Q |
544 |
tgttagaagggcagttgaattttggaggcaattttgacaatcatcgggtttgacatctcctctacacagtccaatagcgtttactttgtcggtgtttatg |
643 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
1035 |
tgttagaagggcagttgaattttggaggcaattttgacaatcatcgggtttgacatctcctctacacagtccaatagcgtttactttgtcggtgtttacg |
1134 |
T |
|
| Q |
644 |
ccataagaggaattatagaaaccgtagttaatat |
677 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
1135 |
ccataagaggaattatagaaaccgtagttaatat |
1168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341; HSP #2
Raw Score: 589; E-Value: 0
Query Start/End: Original strand, 44 - 677
Target Start/End: Original strand, 8191 - 8822
Alignment:
| Q |
44 |
ggtgttggtgatggtgatgatgacgacgatgatgaaggtgaatcttgtgtttgttgatagaaaagtgaattggtttcatatctcaaataacaactgggtc |
143 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8191 |
ggtgttggtgatggtgatgatgacg---atgatgaaggtgaatcttgagtttgttgatagaaaagtgaattggtttcatatctcaaataacaactgggtc |
8287 |
T |
|
| Q |
144 |
taagaaatctaccacctatacccattctattgtcacaacaatttgggatttctttgatagatttatccaaacattcatcacacaatgtttcagacaaatc |
243 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8288 |
taagaaatctaccacctatacctattctattgtcacaacaatttgggatttctttgatagatttatccaaacattcatcacacaatgtttcagacaaatc |
8387 |
T |
|
| Q |
244 |
aggtgtgcattgaacaagagcaaatatggtttgattattatttggaccaatcacatcatttcctacagcatatttaaggtcactttcccccgatgcagct |
343 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8388 |
aggtgtgcattgaacaagagcaaatatggtttgattattatttggaccaatcacatcacttcctacagcatatttaaggtcactttcccccgatgcagct |
8487 |
T |
|
| Q |
344 |
atattttttaaattatacaacaaatttttcagccctttatcaaattcatcttcgacttcctttgttgcgttctgcaaattccatgcaatcatggcaggtc |
443 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8488 |
aaattttttaaattatacaacaaatttttcagccctttatcaaattcatcttcgacttcctttgttgcgttctgcaaattccatgcaatcatggcaggtc |
8587 |
T |
|
| Q |
444 |
ccatttcattgataccaaatattgaacggtgtgaggaacgcaacatgcatttttcatcgtcgtaccatccaattgcttcttttcg-attttgacaaagtt |
542 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
8588 |
ccatttcattgataccaaatattaaacggtgtgaggaacgcaacatgcatttttcatcgtcgtaccatccaattgcttcttttcgtattttgacaaagtt |
8687 |
T |
|
| Q |
543 |
gtgttagaagggcagttgaattttggaggcaattttgacaatcatcgggtttgacatctcctctacacagtccaatagcgtttactttgtcggtgtttat |
642 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8688 |
gtgttagaagggcagttgaattttggaggcaattttgacaatcatcgggtttgacatctcctctacacagtccaatagcgtttactttgtcggtgtttac |
8787 |
T |
|
| Q |
643 |
gccataagaggaattatagaaaccgtagttaatat |
677 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
8788 |
gccataagaggaattatagaaaccgtagttaatat |
8822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 596; Significance: 0; HSPs: 13)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 596; E-Value: 0
Query Start/End: Original strand, 44 - 677
Target Start/End: Original strand, 6506513 - 6507143
Alignment:
| Q |
44 |
ggtgttggtgatggtgatgatgacgacgatgatgaaggtgaatcttgtgtttgttgatagaaaagtgaattggtttcatatctcaaataacaactgggtc |
143 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6506513 |
ggtgttggtgatggtgatgatgacg---atgatgaaggtgaatcttgagtttgttgatagaaaagtgaattggtttcatatctcaaataacaactgggtc |
6506609 |
T |
|
| Q |
144 |
taagaaatctaccacctatacccattctattgtcacaacaatttgggatttctttgatagatttatccaaacattcatcacacaatgtttcagacaaatc |
243 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6506610 |
taagaaatctaccacctatacctattctattgtcacaacaatttgggatttctttgatagatttatccaaacattcatcacacaatgtttcagacaaatc |
6506709 |
T |
|
| Q |
244 |
aggtgtgcattgaacaagagcaaatatggtttgattattatttggaccaatcacatcatttcctacagcatatttaaggtcactttcccccgatgcagct |
343 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6506710 |
aggtgtgcattgaacaagagcaaatatggtttgattattatttggaccaatcacatcacttcctacagcatatttaaggtcactttcccccgatgcagct |
6506809 |
T |
|
| Q |
344 |
atattttttaaattatacaacaaatttttcagccctttatcaaattcatcttcgacttcctttgttgcgttctgcaaattccatgcaatcatggcaggtc |
443 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6506810 |
aaattttttaaattatacaacaaatttttcagccctttatcaaattcatcttcgacttcctttgttgcgttctgcaaattccatgcaatcatggcaggtc |
6506909 |
T |
|
| Q |
444 |
ccatttcattgataccaaatattgaacggtgtgaggaacgcaacatgcatttttcatcgtcgtaccatccaattgcttcttttcgattttgacaaagttg |
543 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6506910 |
ccatttcattgataccaaatattaaacggtgtgaggaacgcaacatgcatttttcatcgtcgtaccatccaattgcttcttttcgattttgacaaagttg |
6507009 |
T |
|
| Q |
544 |
tgttagaagggcagttgaattttggaggcaattttgacaatcatcgggtttgacatctcctctacacagtccaatagcgtttactttgtcggtgtttatg |
643 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
6507010 |
tgttagaagggcagttgaattttggaggcaattttgacaatcatcgggtttgacatctcctctacacagtccaatagcgtttactttgtcggtgtttacg |
6507109 |
T |
|
| Q |
644 |
ccataagaggaattatagaaaccgtagttaatat |
677 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
6507110 |
ccataagaggaattatagaaaccgtagttaatat |
6507143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 96 - 677
Target Start/End: Complemental strand, 6522161 - 6521592
Alignment:
| Q |
96 |
gttgatagaaaagtgaattggtttcatatctcaaataacaactgggtctaagaaatctaccacctatacccattctattgtcacaacaatttgggatttc |
195 |
Q |
| |
|
|||||||||| | ||||||||||||||||||||||| |||||||||||||| || |||| |||||| ||| |||||| ||||||||||| ||||| |
|
|
| T |
6522161 |
gttgatagaagaatgaattggtttcatatctcaaattacaactgggtctaacaattctagcaccta-acc-----tattgttacaacaatttgaaatttc |
6522068 |
T |
|
| Q |
196 |
tttgatagatttatccaaacattcatcacacaatgtttcagacaaatcaggtgtgcattgaacaagagcaaatatggtttgattattatttggaccaatc |
295 |
Q |
| |
|
||||||||||| | ||||||| |||||||| ||||||| |||||||||||||||||||||||||||| || |||||||||| |||||| ||||||||| | |
|
|
| T |
6522067 |
tttgatagattgaaccaaacaatcatcacataatgttttagacaaatcaggtgtgcattgaacaagaccatatatggtttggttattacttggaccaacc |
6521968 |
T |
|
| Q |
296 |
acatcatttcctacagcatatttaaggtcactttcccccgatgcagctatattttttaaattatacaacaaatttttcagccctttatcaaattcatctt |
395 |
Q |
| |
|
||||| ||||||||||||||||||||||||| ||||| ||||||||| ||||| ||||| ||| ||| ||| |||| | |||| | ||| ||| |
|
|
| T |
6521967 |
tcatcacttcctacagcatatttaaggtcactgtcccctgatgcagctctatttcttaaactatccaaaaaaaaattcaccactttgttaaactca---- |
6521872 |
T |
|
| Q |
396 |
cgacttcctttgttgcgttctgcaaattccatgcaatcatggcaggtcccatttcattgataccaaatattgaacggtgtgaggaacgcaacatgcattt |
495 |
Q |
| |
|
|| || ||||||||||| | |||||| ||| |||||||| ||||| |||| ||||||||||||||||| |||| ||||||||||||||| |
|
|
| T |
6521871 |
--acctcatttgttgcgttgtttgtattccaaacaaaataagcaggtccaatttcgttgagaccaaatattgaacggtttgagtaacgcaacatgcattc |
6521774 |
T |
|
| Q |
496 |
ttcatcgtcgtaccatccaattgcttcttttcgattttgacaaagttgtgttagaagggcagttgaattttggaggcaattttgacaatcatcgggtttg |
595 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| ||||||||| ||||||||||||| |||||||||||| |||||||||||||||||||| | ||||| |
|
|
| T |
6521773 |
ttcatcgttgtaccatccaattgcttcttttcggttttgacaatgttgtgttagaagaacagttgaatttttgaggcaattttgacaatcattgagtttg |
6521674 |
T |
|
| Q |
596 |
acatctcctctacacagtccaatagcgtttactttgtcggtgtttatgccataagaggaattatagaaaccgtagttaatat |
677 |
Q |
| |
|
|||||||||||||| |||||||| |||||||||||||| ||||| | ||||||||||||||||||||||||||||| |||| |
|
|
| T |
6521673 |
acatctcctctacatagtccaatcgcgtttactttgtcagtgttgtttccataagaggaattatagaaaccgtagttgatat |
6521592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 72 - 677
Target Start/End: Original strand, 6512451 - 6513044
Alignment:
| Q |
72 |
atgatgaaggtgaatcttgtgtttgttgatagaaaagtgaattggtttcatatctcaaataacaactgggtctaagaaatctaccacctatacccattct |
171 |
Q |
| |
|
||||||| |||| |||| |||||||||||||||| ||||||| |||||||||||||||||||||||| ||||||| || |||| |||| || || |
|
|
| T |
6512451 |
atgatgagggtggatctggtgtttgttgatagaagagtgaatcggtttcatatctcaaataacaacttggtctaacaattctagcacc------caacct |
6512544 |
T |
|
| Q |
172 |
attgtcacaacaatttgggatttctttgatagatttatccaaacattcatcacacaatgtttcagacaaatcaggtgtgcattgaacaagagcaaatatg |
271 |
Q |
| |
|
|||| |||||| |||||||| ||||||||||||| ||||||| ||||| ||||||| || ||||||||||||||||||||||||||||||| |||| |
|
|
| T |
6512545 |
gttgttacaacatcttgggattgctttgatagattttaccaaacaatcatcgcacaatgatttagacaaatcaggtgtgcattgaacaagagcatatata |
6512644 |
T |
|
| Q |
272 |
gtttgattattatttggaccaatcacatcatttcctacagcatatttaaggtcactttcccccgatgcagctatattttttaaattatacaacaaatttt |
371 |
Q |
| |
|
||||||||||||||| |||||| | ||||| |||| |||||||||||||||||||| || || |||| |||| ||||| ||||||||| ||| ||||||| |
|
|
| T |
6512645 |
gtttgattattattttgaccaacctcatcacttccaacagcatatttaaggtcactatcacctgatgaagctctatttcttaaattatccaataaatttt |
6512744 |
T |
|
| Q |
372 |
tcagccctttatcaaattcatcttcgacttcctttgttgcgttctgcaaattccatgcaatcatggcaggtcccatttcattgataccaaatattgaacg |
471 |
Q |
| |
|
|||| ||||||||||||||||||| ||||| || || | |||| ||||| | | ||||| ||||||| | ||| ||||||||||| |
|
|
| T |
6512745 |
tcagtactttatcaaattcatcttca------tttgtagcattgttcaaactccatcctaaataaaaaggtctagtttcattcagaccgaatattgaacg |
6512838 |
T |
|
| Q |
472 |
gtgtgaggaacgcaacatgcatttttcatcgtcgtaccatccaattgcttcttttcgattttgacaaagttgtgttagaagggcagttgaattttggagg |
571 |
Q |
| |
|
|| |||| |||||||||||||| | || || || ||||| ||||| || ||||||||||||||||||||||||||||||| | ||| |||||| | | | |
|
|
| T |
6512839 |
gtatgagtaacgcaacatgcatgtatcttcatcataccaaccaatagcctcttttcgattttgacaaagttgtgttagaaagacagatgaattctttatg |
6512938 |
T |
|
| Q |
572 |
caattttgacaatcatcgggtttgacatctcctctacacagtccaatagcgtttactttgtcggtgtttatgccataagaggaattatagaaaccgtagt |
671 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
6512939 |
caattttgacaatcattgggtttgacatctcctctacaaagtccaatagcgtttactttgtcggtgtttattccataagaggaattatagaaaccgtagt |
6513038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 77 - 672
Target Start/End: Original strand, 6516855 - 6517438
Alignment:
| Q |
77 |
gaaggtgaatcttgtgtttgttgatagaaaagtgaattggtttcatatctcaaataacaactgggtctaagaaatctaccacctatacccattctattgt |
176 |
Q |
| |
|
|||||||||||||||||| ||||||| || ||||||| |||||||||||||||||||||||||||||||| || |||| ||| ||| || |||| |
|
|
| T |
6516855 |
gaaggtgaatcttgtgttggttgataaaagagtgaatcggtttcatatctcaaataacaactgggtctaacaactctagcact------catcctgttgt |
6516948 |
T |
|
| Q |
177 |
cacaacaatttgggatttctttgatagatttatccaaacattcatcacacaatgtttcagacaaatcaggtgtgcattgaacaagagcaaatatggtttg |
276 |
Q |
| |
|
|||||| ||| |||||| |||||||||| | ||||||| |||||||| ||||||| | |||||||||||||||||||| | ||| || |||||||||| |
|
|
| T |
6516949 |
tacaacatattgcgatttcattgatagattgaaccaaacaatcatcacaaaatgttttaaacaaatcaggtgtgcattgagctagaccatatatggtttg |
6517048 |
T |
|
| Q |
277 |
attattatttggaccaatcacatcatttcctacagcatatttaaggtcactttcccccgatgcagctatattttttaaattatacaacaaatttttcagc |
376 |
Q |
| |
|
||||||||||||||||| | ||||| ||||||||||||||||||||||||| ||||| ||||||||| ||||| ||||||||| ||||||||||||| || |
|
|
| T |
6517049 |
attattatttggaccaacctcatcacttcctacagcatatttaaggtcactgtcccctgatgcagctctatttcttaaattatccaacaaatttttccgc |
6517148 |
T |
|
| Q |
377 |
cctttatcaaattcatcttcgacttcctttgttgcgttctgcaaattccatgcaatcat-ggcaggtcccatttcattgataccaaatattgaacggtgt |
475 |
Q |
| |
|
||||||||||||||| |||| ||| | || ||| |||| ||||||| |||| ||||| | |||| || |||||||||||||||| | |
|
|
| T |
6517149 |
actttatcaaattcat------cttcatttatcgccgtcttcaaactccatgc-ttcataataaggtctagtgtcatagagaccaaatattgaacggctt |
6517241 |
T |
|
| Q |
476 |
gaggaacgcaacatgcatttttcatcgtcgtaccatccaattgcttcttttcgattttgacaaagttgtgttagaagggcagttgaattttggaggcaat |
575 |
Q |
| |
|
||| |||||||||||||| | ||||| |||||||| |||||||||| ||||| |||||||||| |||||||||||| |||||||||||||||| |||| |
|
|
| T |
6517242 |
gagtaacgcaacatgcatctatcatcatcgtaccaaccaattgcttgttttctattttgacaacgttgtgttagaaacacagttgaattttggagacaat |
6517341 |
T |
|
| Q |
576 |
tttgacaatcatcgggtttgacatctcctctacacagtccaatagcgtttactttgtcggtgtttatgccataagaggaattatagaaaccgtagtt |
672 |
Q |
| |
|
|| ||||||||| ||||| | ||||||||| || |||||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
6517342 |
ttcgacaatcattcggttttaaatctcctctgcatagtccaattgcgtttactttgtcgctgtttatgccataagaggagttatagaaaccgtagtt |
6517438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 437 - 546
Target Start/End: Complemental strand, 47778150 - 47778041
Alignment:
| Q |
437 |
gcaggtcccatttcattgataccaaatattgaacggtgtgaggaacgcaacatgcatttttcatcgtcgtaccatccaattgcttcttttcgattttgac |
536 |
Q |
| |
|
|||||||| |||||||||| | |||||||||||||| |||| |||||||||||||||||||||| |||||||| ||||||||||| ||| ||| ||| |
|
|
| T |
47778150 |
gcaggtccaatttcattgaggctaaatattgaacggtctgagtaacgcaacatgcatttttcatcctcgtaccaaccaattgcttcctttttgtttggac |
47778051 |
T |
|
| Q |
537 |
aaagttgtgt |
546 |
Q |
| |
|
|||||||||| |
|
|
| T |
47778050 |
aaagttgtgt |
47778041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 585 - 672
Target Start/End: Original strand, 47713336 - 47713423
Alignment:
| Q |
585 |
catcgggtttgacatctcctctacacagtccaatagcgtttactttgtcggtgtttatgccataagaggaattatagaaaccgtagtt |
672 |
Q |
| |
|
|||| ||||| ||||||||||| || |||||||| ||||||||||||||||||||| |||||||||| |||| |||||||||||||| |
|
|
| T |
47713336 |
catcaggtttaacatctcctctgcagagtccaatggcgtttactttgtcggtgttttggccataagagaaattgtagaaaccgtagtt |
47713423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 461 - 672
Target Start/End: Original strand, 47760133 - 47760338
Alignment:
| Q |
461 |
aatattgaacggtgtgaggaacgcaacatgcatttttcatcgtcgtaccatccaattgcttcttttcgattttgacaaagttgtgttagaagggcagttg |
560 |
Q |
| |
|
|||||||| |||| |||| ||||||||||||| || |||| |||| ||||||||||||||| | ||| ||||||||| ||| ||||| | ||| |
|
|
| T |
47760133 |
aatattgatcggtttgagtaacgcaacatgcagttatcat------accaaccaattgcttctttttggtttggacaaagttttgtgagaagaactcttg |
47760226 |
T |
|
| Q |
561 |
aattttggaggcaattttgacaatcatcgggtttgacatctcctctacacagtccaatagcgtttactttgtcggtgtttatgccataagaggaattata |
660 |
Q |
| |
|
||| | ||| ||| | | ||| | |||||||| |||||||||||||| |||||||| |||||||||||||| |||||| ||||||||| ||| || |
|
|
| T |
47760227 |
aatcgttgagacaactgcggcaaacgtcgggtttaacatctcctctacagagtccaatggcgtttactttgtcagtgttttggccataagaaatattgta |
47760326 |
T |
|
| Q |
661 |
gaaaccgtagtt |
672 |
Q |
| |
|
|||||||||||| |
|
|
| T |
47760327 |
gaaaccgtagtt |
47760338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 587 - 672
Target Start/End: Original strand, 47745921 - 47746006
Alignment:
| Q |
587 |
tcgggtttgacatctcctctacacagtccaatagcgtttactttgtcggtgtttatgccataagaggaattatagaaaccgtagtt |
672 |
Q |
| |
|
|||||||| ||||||||||| || |||||||| ||||||||||| || |||||| |||||||||| |||| |||||||||||||| |
|
|
| T |
47745921 |
tcgggtttaacatctcctctgcagagtccaatggcgtttactttatcagtgttttggccataagagaaattgtagaaaccgtagtt |
47746006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 461 - 546
Target Start/End: Complemental strand, 6523810 - 6523725
Alignment:
| Q |
461 |
aatattgaacggtgtgaggaacgcaacatgcatttttcatcgtcgtaccatccaattgcttcttttcgattttgacaaagttgtgt |
546 |
Q |
| |
|
||||| ||||||| ||| |||||||||||||||||||||| || ||||| ||||||||||||||| | ||| ||||||| ||||| |
|
|
| T |
6523810 |
aatatggaacggtctgaataacgcaacatgcatttttcatcttcataccaaccaattgcttctttttggtttggacaaagctgtgt |
6523725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 590 - 672
Target Start/End: Original strand, 47718135 - 47718217
Alignment:
| Q |
590 |
ggtttgacatctcctctacacagtccaatagcgtttactttgtcggtgtttatgccataagaggaattatagaaaccgtagtt |
672 |
Q |
| |
|
||||| ||||||||||| || || |||| |||||||||||||| |||||| |||||||||| |||| |||||||||||||| |
|
|
| T |
47718135 |
ggtttaacatctcctctgcagaggccaacggcgtttactttgtcagtgttttggccataagagaaattgtagaaaccgtagtt |
47718217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 461 - 526
Target Start/End: Complemental strand, 47782034 - 47781969
Alignment:
| Q |
461 |
aatattgaacggtgtgaggaacgcaacatgcatttttcatcgtcgtaccatccaattgcttctttt |
526 |
Q |
| |
|
||||| ||||||| ||| |||| ||||||||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
47782034 |
aatatagaacggtctgaataacgtaacatgcatttctcatcctcgtaccatccaattgcttctttt |
47781969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 437 - 526
Target Start/End: Complemental strand, 47788272 - 47788183
Alignment:
| Q |
437 |
gcaggtcccatttcattgataccaaatattgaacggtgtgaggaacgcaacatgcatttttcatcgtcgtaccatccaattgcttctttt |
526 |
Q |
| |
|
|||||||| ||||| || | ||| | ||||||||||| ||| |||| ||||| ||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
47788272 |
gcaggtccaatttcgtttagacccattattgaacggtctgaataacgtaacatacatttctcatcctcgtaccatccaattgcttctttt |
47788183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 236 - 277
Target Start/End: Original strand, 47759914 - 47759955
Alignment:
| Q |
236 |
gacaaatcaggtgtgcattgaacaagagcaaatatggtttga |
277 |
Q |
| |
|
||||||||||||||||| ||||||||| || ||||||||||| |
|
|
| T |
47759914 |
gacaaatcaggtgtgcactgaacaagaccatatatggtttga |
47759955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 5e-24; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 485 - 630
Target Start/End: Complemental strand, 722305 - 722161
Alignment:
| Q |
485 |
aacatgcatttttcatcgtcgtaccatccaattgcttcttttcgattttgacaaagttgtgttagaagggcagttgaattttggaggcaattttgacaat |
584 |
Q |
| |
|
||||||||||||||||| |||||| ||||||||||||||||||| |||| || |||||||||||||| || |||||| || | ||||| ||||||||| |
|
|
| T |
722305 |
aacatgcatttttcatcatcgtacaatccaattgcttcttttcggttttataaatgttgtgttagaaggacaattgaatatttgtggcaa-tttgacaat |
722207 |
T |
|
| Q |
585 |
catcgggtttgacatctcctctacacagtccaatagcgtttacttt |
630 |
Q |
| |
|
||| | | || |||||||||||||| ||||||| |||||||||| |
|
|
| T |
722206 |
cattgagcttaacatctcctctacatagtccaaccacgtttacttt |
722161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 610 - 657
Target Start/End: Complemental strand, 704425 - 704378
Alignment:
| Q |
610 |
cagtccaatagcgtttactttgtcggtgtttatgccataagaggaatt |
657 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| ||||||| ||||| |
|
|
| T |
704425 |
cagtccaatagcgtttactttgtcagtgtttatgtcataagatgaatt |
704378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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