View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11043_low_10 (Length: 454)
Name: NF11043_low_10
Description: NF11043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11043_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 401; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 20 - 444
Target Start/End: Complemental strand, 38991414 - 38990990
Alignment:
| Q |
20 |
aacaaacaataacaatgaacagttggttatgccaacatcaccaccaagagcaccctcttctaagagatctcggggcagaccaaagggctccaaaaacaag |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| |
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| T |
38991414 |
aacaaacaataacaatgaacagttggttatgccaacatcaccaccaagagcaccctcctctaagagatctcgtggcagaccaaagggctccaaaaacaag |
38991315 |
T |
|
| Q |
120 |
cccaagccacctgcggtggttatggtagagcctcaaacattaatgaaacaaatatttattgaaatccctgctgggtatgatgttttggagtccatcatca |
219 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38991314 |
cccaagacacctgcggtggttatggtagagcctcaaacattaatgaaacaaatatttattgaaatccctgctgggtatgatgttttggagtccatcatca |
38991215 |
T |
|
| Q |
220 |
agatggcttggcgtcatgaagctgacatcacagtgctgagaggttctggtattgtctctgacatcaccattcacaactcgttatcccataccccaccact |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |
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| T |
38991214 |
agatggcttggcgtcatgaagctgacatcacagtgctgagaggttttggtattgtctctgacatcaccattcacagctcgttatctcataccccaccact |
38991115 |
T |
|
| Q |
320 |
cactattgaaggacctgtccaaatgacgtctctctctggcacttatgtcaatcccaatgttgataatgttccttctgaagtcattgccaaccctgcatgt |
419 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38991114 |
cactattgaaggacctgtccaaatgacgtctctctctggcacttatgtcaatcccaatgttgataatgttccttctgaagtcattgccaaccctgcatgt |
38991015 |
T |
|
| Q |
420 |
tcttcttttagcattttcctctctg |
444 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
38991014 |
tcttcttttagcattttcctctctg |
38990990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 81 - 444
Target Start/End: Original strand, 38954422 - 38954785
Alignment:
| Q |
81 |
aagagatctcggggcagaccaaagggctccaaaaacaagcccaagccacctgcggtggttatggtagagcctcaaacattaatgaaacaaatatttattg |
180 |
Q |
| |
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|||||||| |||| ||| |||||||||||||||| || ||||| || || | |||| | | ||||||||| ||| || ||||||||||| ||||| | |
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| T |
38954422 |
aagagatcaaggggtagatcaaagggctccaaaaataaacccaaacccccagtggtgatcaccgtagagcctgaaagttttatgaaacaaatttttatcg |
38954521 |
T |
|
| Q |
181 |
aaatccctgctgggtatgatgttttggagtccatcatcaagatggcttggcgtcatgaagctgacatcacagtgctgagaggttctggtattgtctctga |
280 |
Q |
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|||| | ||||| | ||||||| |||||||||||||||||||||||||||||||| ||||||| ||| |||| |||||||||| ||| |||||||| | |
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| T |
38954522 |
aaatatcagctggatgtgatgttgtggagtccatcatcaagatggcttggcgtcatcaagctgatatctcagtaatgagaggttccggtcttgtctctaa |
38954621 |
T |
|
| Q |
281 |
catcaccattcacaactcgttatcccataccccaccactcactattgaaggacctgtccaaatgacgtctctctctggcacttatgtcaatcccaatgtt |
380 |
Q |
| |
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|| ||||| | |||||| ||| ||| |||| |||| |||||||||||||| || |||||| |||||||||||||||||| ||||||||||| | |
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| T |
38954622 |
tattaccatccgtaactcgacatctcattcccctgcactaactattgaaggacccatcaaaatgatgtctctctctggcacttacatcaatcccaattct |
38954721 |
T |
|
| Q |
381 |
gataatgttccttctgaagtcattgccaaccctgcatgttcttcttttagcattttcctctctg |
444 |
Q |
| |
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|||| ||||||||||||| |||| |||||||| ||||||||||||||||||||| |||| |
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|
| T |
38954722 |
gatactgttccttctgaattcatcaccaaccctaaccattcttcttttagcattttcctatctg |
38954785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 126 - 264
Target Start/End: Complemental strand, 18528173 - 18528036
Alignment:
| Q |
126 |
ccacctgcggtggttatggtagagcctcaaacattaatgaaacaaatatttattgaaatccctgctgggtatgatgttttggagtccatcatcaagatgg |
225 |
Q |
| |
|
||||||| |||| |||||||||||||| |||| ||| |||||||||| |||||| |||||||| || |||||||||| |||||||||||||||| ||| |
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| T |
18528173 |
ccacctgtggtgattatggtagagcctgaaacctta-tgaaacaaatttttattaaaatccctattgagtatgatgttgtggagtccatcatcaaaatga |
18528075 |
T |
|
| Q |
226 |
cttggcgtcatgaagctgacatcacagtgctgagaggtt |
264 |
Q |
| |
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||||||| || |||| |||||| ||||||||||||||| |
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| T |
18528074 |
attggcgttatcaagcagacatctcagtgctgagaggtt |
18528036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 98 - 265
Target Start/End: Original strand, 18527758 - 18527925
Alignment:
| Q |
98 |
accaaagggctccaaaaacaagcccaagccacctgcggtggttatggtagagcctcaaacattaatgaaacaaatatttattgaaatccctgctgggtat |
197 |
Q |
| |
|
||||||||||| ||| ||||| ||||| ||| || |||| | |||||||| || |||| || ||||||| ||| |||||||||||| ||||| ||| |
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| T |
18527758 |
accaaagggctacaagaacaaacccaaaccatatgtggtgatcatggtagatcccaaaacttttatgaaactaatttttattgaaatctctgctatatat |
18527857 |
T |
|
| Q |
198 |
gatgttttggagtccatcatcaagatggcttggcgtcatgaagctgacatcacagtgctgagaggttc |
265 |
Q |
| |
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||| || |||| ||||||||| |||||||||||| ||| || |||||| | ||| |||||||||| |
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|
| T |
18527858 |
gattttatggaaaccatcatcaggatggcttggcgacatctagatgacatatctgtgatgagaggttc |
18527925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 68
Target Start/End: Original strand, 18527626 - 18527673
Alignment:
| Q |
21 |
acaaacaataacaatgaacagttggttatgccaacatcaccaccaaga |
68 |
Q |
| |
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||||||| || ||||||| |||||||| |||||||||||||||||||| |
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|
| T |
18527626 |
acaaacattagcaatgaaaagttggttttgccaacatcaccaccaaga |
18527673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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