View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11043_low_15 (Length: 346)
Name: NF11043_low_15
Description: NF11043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11043_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 146; Significance: 7e-77; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 6 - 163
Target Start/End: Original strand, 2567910 - 2568067
Alignment:
| Q |
6 |
aggagcagagaagaaagaaatagaggccagggttcttggacttggaccccatgccaccttgttgtccatgttcaactttgtgggtaaggattttccaaca |
105 |
Q |
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| T |
2567910 |
aggaccagaaaagaaagaaatagaggccagggttcttggacttggaccccatgccaccttgttgtccatgttcaattttgtgggtaaggattttccaaca |
2568009 |
T |
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| Q |
106 |
aaagccattagaaatattttgaaatacatcgtctttatataagtcggttaaatcagac |
163 |
Q |
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| T |
2568010 |
aaagccattagaaatattttgaaatacatcgtctttatataagtcggttaaatcagac |
2568067 |
T |
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Target: chr1; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 239 - 332
Target Start/End: Original strand, 2568086 - 2568179
Alignment:
| Q |
239 |
cctattgacacgcttaaacattattttgatgcaacaattataaatatccgatcatattcacaataatattatctaatttttatattgttgtaat |
332 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2568086 |
cctattgacacgcttaaacattattttgatgcaacaattataaatatccgatcatattcacaataatattatctaatttttatattgttgtaat |
2568179 |
T |
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