View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11043_low_17 (Length: 327)
Name: NF11043_low_17
Description: NF11043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11043_low_17 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 265; Significance: 1e-148; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 308
Target Start/End: Original strand, 40891600 - 40891908
Alignment:
| Q |
1 |
caattagaaataagagtacaaaggatactcaacccatacaactcgaaaagggtttatatgaagagcaatgctagctagcaggactcaataacccacgaca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| |||||||||||||||| |
|
|
| T |
40891600 |
caattagaaataagagtacaaaggatactcaacccatacaactcgaagagggtttatatgaagagcaatgttagctagcaggattcaataacccacgaca |
40891699 |
T |
|
| Q |
101 |
acacacgacgttgaaatcaatggatagcatacaattcatgggggag-agagaataaaagcaatgttgcacattcttcatccaagggttatattggtgtcg |
199 |
Q |
| |
|
||| |||||||||||||||| |||||||||||||| |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40891700 |
acaaacgacgttgaaatcaacggatagcatacaatacatggggggggagagaataaaagcaatgttgcacattcttcatccaagggttatattggtgtcg |
40891799 |
T |
|
| Q |
200 |
tgtgttttcgtgcttgtattggtgtcgtgccacaaacaattttcttataatgaattctgtgggaaaaacaatgtggaagatttctcaatttttcccctgt |
299 |
Q |
| |
|
|| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40891800 |
tgcgttttcgtgcttgtattgttgtcgtgccacaaacaattttcttataatgaattctgtgggaaaaacaatgtggaagatttctcaatttttcccctgt |
40891899 |
T |
|
| Q |
300 |
atatcgcac |
308 |
Q |
| |
|
||||||||| |
|
|
| T |
40891900 |
atatcgcac |
40891908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 97 - 231
Target Start/End: Complemental strand, 3450207 - 3450073
Alignment:
| Q |
97 |
gacaacacacgacgttgaaatcaatggatagcatacaattcatgggggagagagaataaaagcaatgttgcacattcttcatccaagggttatattggtg |
196 |
Q |
| |
|
||||||||||||||||| |||||| |||||||||||| | ||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| ||| |
|
|
| T |
3450207 |
gacaacacacgacgttggaatcaacggatagcatacactacatgggggagagagaataaaagcaatgctgcacattattcatccaagggttatattagtg |
3450108 |
T |
|
| Q |
197 |
tcgtgtgttttcgtgcttgtattggtgtcgtgcca |
231 |
Q |
| |
|
||||| ||||||||| ||||||||||||||||||| |
|
|
| T |
3450107 |
tcgtgcgttttcgtgtttgtattggtgtcgtgcca |
3450073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 104 - 231
Target Start/End: Complemental strand, 34254516 - 34254388
Alignment:
| Q |
104 |
cacgacgttgaaatcaatggatagcatacaattcatgggggagagaga-ataaaagcaatgttgcacattcttcatccaagggttatattggtgtcgtgt |
202 |
Q |
| |
|
|||||||||| |||||| || ||| ||||||| || |||||||||||| | |||||||||| |||||||| |||||||||||| ||||| |||||||| |
|
|
| T |
34254516 |
cacgacgttggaatcaacgggtaggatacaatacacgggggagagagagaaaaaagcaatgctgcacatttttcatccaagggctatatcattgtcgtgt |
34254417 |
T |
|
| Q |
203 |
gttttcgtgcttgtattggtgtcgtgcca |
231 |
Q |
| |
|
|| ||| |||||| |||||||||||||| |
|
|
| T |
34254416 |
gtattcaggcttgtgttggtgtcgtgcca |
34254388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 228
Target Start/End: Complemental strand, 26715392 - 26715224
Alignment:
| Q |
61 |
aagagcaatgctagctagcaggactcaa-taacccacgacaacacacgacgttgaaatcaatggatagcatacaattcatggg-ggagagagaataaaag |
158 |
Q |
| |
|
||||||| ||||| ||||| ||||||| | |||||||||||||||||| || |||| | | || ||||||||| |||||| ||||||||||| ||| |
|
|
| T |
26715392 |
aagagcagtgctatttagcacgactcaaatgacccacgacaacacacgagattcgaatcgacgaatggcatacaatacatgggaggagagagaattaaaa |
26715293 |
T |
|
| Q |
159 |
caatgttgcacattcttcatccaagggttatattggtgtcgtgtgttttcgtgcttgtattggtgtcgtg |
228 |
Q |
| |
|
|| || |||||| || | ||||||||||||| |||||||| ||| |||||| |||| | |||||||| |
|
|
| T |
26715292 |
cagtgctgcaca-tcattatccaagggttatgcgtgtgtcgtgcgttctcgtgcatgtaattgtgtcgtg |
26715224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 82 - 231
Target Start/End: Complemental strand, 10505648 - 10505507
Alignment:
| Q |
82 |
gactcaataacccacgacaacacacgacgttgaaatcaatggatagcatacaattcatgggggagagagaataaaagcaatgttgcacattcttcatcca |
181 |
Q |
| |
|
|||||||| ||| |||||||||||| | |||| ||||||||||||||||||||| ||| |||| | |||||||||||| ||||||| |||||||| |
|
|
| T |
10505648 |
gactcaatgaccaacgacaacacaccatgttggaatcaatggatagcatacaatacattgggg-----ggataaaagcaatgccgcacattattcatcca |
10505554 |
T |
|
| Q |
182 |
agggttatattggtgtcgtgtgttttcgtgcttgtattggtgtcgtgcca |
231 |
Q |
| |
|
||| |||||| ||||| ||||||| ||||||||||||||||||| |
|
|
| T |
10505553 |
aggattatatcaatgtcg---catttcgtgtttgtattggtgtcgtgcca |
10505507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 123 - 231
Target Start/End: Original strand, 633816 - 633924
Alignment:
| Q |
123 |
gatagcatacaattcatgggggagagagaataaaagcaatgttgcacattcttcatccaa-gggttatattggtgtcgtgtgttttcgtgcttgtattgg |
221 |
Q |
| |
|
|||| |||||||| | |||||||||||||||||| ||| ||| ||||| ||||||||| ||||| | |||||||||| ||||||||||||| |||| |
|
|
| T |
633816 |
gatatcatacaatatacgggggagagagaataaaaaaaatcttgtacattattcatccaatgggtttaactggtgtcgtgcgttttcgtgcttg-attga |
633914 |
T |
|
| Q |
222 |
tgtcgtgcca |
231 |
Q |
| |
|
|||||||||| |
|
|
| T |
633915 |
tgtcgtgcca |
633924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 91 - 179
Target Start/End: Original strand, 39606414 - 39606501
Alignment:
| Q |
91 |
acccacgacaacacacgacgttgaaatcaatggatagcatacaattcatgggggagagagaataaaagcaatgttgcacattcttcatc |
179 |
Q |
| |
|
||||| |||||||||| | | |||||| | || ||||||||||| |||||||| |||| ||||||||||||| |||||||| |||||| |
|
|
| T |
39606414 |
acccatgacaacacacaatttcgaaatcgacggctagcatacaatacatggggg-gagaaaataaaagcaatgctgcacattattcatc |
39606501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 63 - 228
Target Start/End: Original strand, 9522212 - 9522378
Alignment:
| Q |
63 |
gagcaatgctagctagcaggactcaa-taacccacgacaacacacgacgttgaaatcaatggatagcatacaattcatggg-ggagagagaataaaagca |
160 |
Q |
| |
|
||||| ||||| ||||| ||||||| | |||||||||||||||||| || ||||| |||| ||||||||| |||||| ||||||||||| |||||| |
|
|
| T |
9522212 |
gagcagtgctatttagcacgactcaaatgacccacgacaacacacgagattcaaatcgtcggatggcatacaatacatgggaggagagagaattaaagca |
9522311 |
T |
|
| Q |
161 |
atgttgcacattcttcatccaagggttatattggtgtcgtgtgttttcgtgcttgtattggtgtcgtg |
228 |
Q |
| |
|
|| |||||| || | |||||||| |||| |||||||| ||| |||||| |||| | |||||||| |
|
|
| T |
9522312 |
gtgctgcaca-tcataatccaaggtttatgcgcgtgtcgtgcgttctcgtgcatgtaattgtgtcgtg |
9522378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University