View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11043_low_19 (Length: 303)
Name: NF11043_low_19
Description: NF11043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11043_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 96 - 284
Target Start/End: Original strand, 56189505 - 56189693
Alignment:
| Q |
96 |
agggttcacttgcacgactctctcagggatgactttatcaccatccacttttgccagcacctcaaattgcaatctcacagtctcaggcttggtcctccat |
195 |
Q |
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| T |
56189505 |
agggttcacttgcacgactctctcaggtatgactttatcaccatccacttttgccagcacctcaaattgcaatctcacagtctcaggcttggtcctccat |
56189604 |
T |
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| Q |
196 |
ttggggaaaccctcaaaactaacaccatctccttccttcaacttcttctcagcttgaaagcctatctttacaaaagtctgagcagaaac |
284 |
Q |
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| T |
56189605 |
ttggggaaaccctcaaaactaacaccatctccttccttcaacttcttctcagcttgaaagcctatctttacaaaagtctgagcagaaac |
56189693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 56189345 - 56189441
Alignment:
| Q |
1 |
agaatccactctacaattcctttgtgtaaagtatacaaaaatcaaacctttcccactaattacaaggcgaaggggatgggcggaggctgaacaatag |
97 |
Q |
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| T |
56189345 |
agaatccactctacaattcctttgtgtaaagtatacaaaaatcaaacctttcccactaattacaaggcgaaggggatgggcggaggctgaacaatag |
56189441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 91 - 284
Target Start/End: Complemental strand, 2391759 - 2391566
Alignment:
| Q |
91 |
acaatagggttcacttgcacgactctctcagggatgactttatcaccatccacttttgccagcacctcaaattgcaatctcacagtctcaggcttggtcc |
190 |
Q |
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| T |
2391759 |
acaacagggttcacttgcatgactctctcaggtatgactttatcaccatcaactttagccagcacctcaaaatgcaacctcacagtgtcaggcttagtcc |
2391660 |
T |
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| Q |
191 |
tccatttggggaaaccctcaaaactaacaccatctccttccttcaacttcttctcagcttgaaagcctatctttacaaaagtctgagcagaaac |
284 |
Q |
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|||||| ||||||||||||||||||| ||||||||||| |||| ||||||||||||||| || |||||||| |||||||||||||||||||| |
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| T |
2391659 |
tccattcagggaaaccctcaaaactaatcccatctccttctttcagcttcttctcagcttggaatcctatcttcacaaaagtctgagcagaaac |
2391566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 2391917 - 2391824
Alignment:
| Q |
1 |
agaatccactctacaattccttt-gtgtaaagtatacaaaaatcaaacctttcccactaatt-acaaggcgaaggggatgggcggaggctgaac |
92 |
Q |
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||||||| ||||||||||||||| | ||||||| ||||||||||||||| || ||||| ||| ||||||||||||||||||||||||||||||| |
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| T |
2391917 |
agaatcccctctacaattccttttgagtaaagtttacaaaaatcaaacccttgccactgatttacaaggcgaaggggatgggcggaggctgaac |
2391824 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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