View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11043_low_20 (Length: 273)
Name: NF11043_low_20
Description: NF11043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11043_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 158 - 254
Target Start/End: Original strand, 55146139 - 55146235
Alignment:
| Q |
158 |
gcatcagcgaactggatatatttagaaccacgaacaaaaaataaatatacagcactagtcccctaaaaattaatnnnnnnncctaaatagcactagc |
254 |
Q |
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| T |
55146139 |
gcatcagcgaactggatatatttagaaccacaaacaaaaaataaatatacagcactagtccccaaaaaattaataaaaaaacctaaatagcactagc |
55146235 |
T |
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Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 13 - 77
Target Start/End: Original strand, 55145995 - 55146058
Alignment:
| Q |
13 |
cagacaattgagacatggttagtcccattttcataatcatacacaattaaaatcattacttaaag |
77 |
Q |
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| T |
55145995 |
cagacaattcagacatggttagtcccattttcataatcatacacaatt-aaatcattacttaaag |
55146058 |
T |
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