View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11043_low_21 (Length: 236)
Name: NF11043_low_21
Description: NF11043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11043_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 15 - 217
Target Start/End: Original strand, 37487459 - 37487661
Alignment:
| Q |
15 |
gatgaaagagggaaacggcaacttaaatatgtatgggaatcgaaacgcgttaaagatcttgagattagtgactgctctgtgcatgacgatgacattgagc |
114 |
Q |
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| T |
37487459 |
gatgaaagagggaaacggcaacttaaatatgtatgggaatcgaaacgcgttaaagatcttgagattagtgactgctttgtgcatgacgatgacattaagc |
37487558 |
T |
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| Q |
115 |
ctcttatatttaaatgtgatcgcttcgagtataggaataaggcacagattcaaaaagataaggagattaaagtcgccatggctgagtacaaacagctccg |
214 |
Q |
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| T |
37487559 |
ctcttatatttaaatgtgatcgcttcgagtataggaataaggcacagattcaaaaagataaggagattaaagtcgccatggctgagtacaaacagctccg |
37487658 |
T |
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| Q |
215 |
tcg |
217 |
Q |
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||| |
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| T |
37487659 |
tcg |
37487661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 39 - 202
Target Start/End: Original strand, 37473070 - 37473233
Alignment:
| Q |
39 |
aaatatgtatgggaatcgaaacgcgttaaagatcttgagattagtgactgctctgtgcatgacgatgacattgagcctcttatatttaaatgtgatcgct |
138 |
Q |
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| T |
37473070 |
aaatatgaatgggaatcgaaacgcgttgaagatcttgagatgagtgacttctctatgtttgacgatgacattgagccttttatgtttatatgcgcgcgct |
37473169 |
T |
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| Q |
139 |
tcgagtataggaataaggcacagattcaaaaagataaggagattaaagtcgccatggctgagta |
202 |
Q |
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| || | ||||||||| |||||||||||||||||||||||| |||| |||||||||||||| |
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| T |
37473170 |
ttatttacaagaataaggcccagattcaaaaagataaggagattgaagtagccatggctgagta |
37473233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 39 - 202
Target Start/End: Original strand, 37481786 - 37481949
Alignment:
| Q |
39 |
aaatatgtatgggaatcgaaacgcgttaaagatcttgagattagtgactgctctgtgcatgacgatgacattgagcctcttatatttaaatgtgatcgct |
138 |
Q |
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| T |
37481786 |
aaatatgaatgggaatcgaaacgcgtcgaagatcttgatatgagtgacttctctatgtttgacgatgacattgagccttttatgtttatatgcgcgcgct |
37481885 |
T |
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| Q |
139 |
tcgagtataggaataaggcacagattcaaaaagataaggagattaaagtcgccatggctgagta |
202 |
Q |
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| || | ||||||||| |||||||||||||||||||||||| |||| |||||||||||||| |
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| T |
37481886 |
ttatttacaagaataaggcccagattcaaaaagataaggagattgaagtagccatggctgagta |
37481949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 39 - 197
Target Start/End: Original strand, 37492707 - 37492865
Alignment:
| Q |
39 |
aaatatgtatgggaatcgaaacgcgttaaagatcttgagattagtgactgctctgtgcatgacgatgacattgagcctcttatatttaaatgtgatcgct |
138 |
Q |
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||||||| |||||||| ||||||| || ||||||||||||||||||||| |||| || |||||||||||||| ||||| |||| |||| |||| || | |
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| T |
37492707 |
aaatatgaatgggaattgaaacgctttgaagatcttgagattagtgacttctctatgtatgacgatgacattaagccttttatgtttatgtgtgggcgat |
37492806 |
T |
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| Q |
139 |
tcgagtataggaataaggcacagattcaaaaagataaggagattaaagtcgccatggct |
197 |
Q |
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| ||||| ||||||||| ||||||||| ||||||||||||||| | |||||| |||| |
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| T |
37492807 |
ttacgtataagaataaggctcagattcaacaagataaggagattagaatcgccagggct |
37492865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 97 - 203
Target Start/End: Original strand, 38922180 - 38922286
Alignment:
| Q |
97 |
atgacgatgacattgagcctcttatatttaaatgtgatcgcttcgagtataggaataaggcacagattcaaaaagataaggagattaaagtcgccatggc |
196 |
Q |
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|||| ||||||||||||||| || | |||| |||||||| || ||||||| ||||||||| |||||| || |||| |||||||| ||| |||||||| |
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| T |
38922180 |
atgatgatgacattgagccttttgtgattaagtgtgatcgatttgagtataagaataaggctcagattaaactagatgaggagattgaagcagccatggc |
38922279 |
T |
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| Q |
197 |
tgagtac |
203 |
Q |
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|||||| |
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| T |
38922280 |
ggagtac |
38922286 |
T |
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