View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11043_low_6 (Length: 511)
Name: NF11043_low_6
Description: NF11043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11043_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 436; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 12 - 459
Target Start/End: Original strand, 55145528 - 55145975
Alignment:
| Q |
12 |
cagagacacaaaagtaggtgtagcttttggaatggttgcagcaaggagatatggaacagacatgacattgtggtatggactgaaagggagaggagatcct |
111 |
Q |
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| T |
55145528 |
cagagacacaaaagtaggtgtagcttttggaatggttgcagcaaggagatatggaacagacatgacattgtggtatggactgaaagggagaggagatcct |
55145627 |
T |
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| Q |
112 |
tataggactcttttgagagaagggatcactgcacttcttaactcatataacagcatccaattctcttaccatccacttggtgtaatcacacacatgaatt |
211 |
Q |
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| T |
55145628 |
tataggactcttttgagagaagggatcactgcacttcttaactcatataacagcatccaattctcttaccatccacttggtgtaatcacacacatgaatt |
55145727 |
T |
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| Q |
212 |
atgctttgatgggctcaactagggatgtcctcgttactgcttatcacttcatgagagctaattctggtgctggaaatgtttcttgcaaattcacttcttg |
311 |
Q |
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| T |
55145728 |
atgctttgatgggctcaactagggatgtcctcgttactgcttatcacttcatgagagctaattctggtgctggaaatgtttcttgcaaattcacttcttg |
55145827 |
T |
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| Q |
312 |
caattaatattttacccttttcctagtatgttcgggaaattatttattatttttaacaactttatctatcttatccagaaaaaatgttgacgcactgtaa |
411 |
Q |
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| T |
55145828 |
caattaatattttacccttttcctagtatgttcgggaaattatttattatttttaacaactttatctatcttatccagaaaaaatgttgacgcactgtaa |
55145927 |
T |
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| Q |
412 |
acattcatgctatgctagaatgttaatttaaatatattctataaatgg |
459 |
Q |
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| T |
55145928 |
acatatatgctatgctagaatgttaatttaaatatattctatatatgg |
55145975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 473 - 509
Target Start/End: Original strand, 55145967 - 55146003
Alignment:
| Q |
473 |
tatatatggttttgaatatgcaacaccccagacaatt |
509 |
Q |
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| T |
55145967 |
tatatatggttttgaatatgcaacaccccagacaatt |
55146003 |
T |
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