View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11043_low_8 (Length: 479)
Name: NF11043_low_8
Description: NF11043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11043_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 410; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 18 - 465
Target Start/End: Original strand, 38463415 - 38463855
Alignment:
| Q |
18 |
ggaacaatatgggtatgtttggcaacacaaataagctggcttatatagctcaatgctgttatcactcaccaaattttctgcaatgcataatataataatt |
117 |
Q |
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| T |
38463415 |
ggaacaatatgggtatgtttggcaacacaaataagctggcttatatagctcaatgctgttatcactcaccaaattttctgcaatgcataatataataatt |
38463514 |
T |
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| Q |
118 |
gtttgcatggtgtttcttcatacaatataaaataaaaacacatgattcatgatttaaatttcttaattatggcgaccaaacttctttgggaaaagaattg |
217 |
Q |
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| T |
38463515 |
gtttgcatggtgtttcttcatacaatataaaataaaaacacatg-------atttaaatttcttaattatggcgaccaaacttctttgggaaaagacttg |
38463607 |
T |
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| Q |
218 |
gtttttgcattttttgttaaatttcctatctatatttctctttcaagtcactaaaaaggctaaatgttttcttcgatagttgatttatttttctagattt |
317 |
Q |
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| T |
38463608 |
gtttttgcattttttgttaaatttcctatctatatttctctttcaagtcactaaaaaggctaaatgttttcttcgatagttgatttatttttctggattt |
38463707 |
T |
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| Q |
318 |
aacaagctcagatgcttctacccgccataatatgattactaaggaatatagtgtttctttattttagattagatatgttgatgatgtgttataaagagaa |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38463708 |
aacaagctcagatgcttctacccgccataatatgattactaaggaatatagtgtttctttattttagattagatatgttgatgatgtgttataaagagaa |
38463807 |
T |
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| Q |
418 |
agatatagataaaaggagctattaaaggtgttgaaaaatatttgatgt |
465 |
Q |
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| T |
38463808 |
agatatagataaaaggagctattaaacgtgttgaaaaatatttgatgt |
38463855 |
T |
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