View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11043_low_9 (Length: 479)
Name: NF11043_low_9
Description: NF11043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11043_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 422; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 19 - 472
Target Start/End: Complemental strand, 49353610 - 49353157
Alignment:
| Q |
19 |
aggaaaactcacaagttgtggcaaagattcaagacttagcaacttcagctttaactttgggatttggttctcattgtggaatgacaatttcaacttaggg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| || |
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| T |
49353610 |
aggaaaactcacaagttgtggcaaagattcaagacttagcaacttcagctttaactttgggatttggttctcattgtgaaatgaaaatttcaacttatgg |
49353511 |
T |
|
| Q |
119 |
caattagtaatgaacaaccactctaagttgggaataacgtgaagtggcatagactttagatttccacaagaagaaatactcaaccactttaggttagaaa |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
49353510 |
caattagtaatgaacaaccactctaagttgggaataacgtgaagtggcatagactttagatttccacaagaagaaatacccaaccactttaggttagaaa |
49353411 |
T |
|
| Q |
219 |
gttgtatcccttcaagcaacaacgtctctagattgtcacaagaattgactgataaaatttctaaacaagtcaactttgcaatctctttttctggtaaagt |
318 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49353410 |
gttgtatcccttcaagcaacaacgtctctagattgtcacaagaattgacagataaaatttctaaacaagtcaactttgcaatctctttttctggtaaagt |
49353311 |
T |
|
| Q |
319 |
atattgctttgtagttatgattagctgccgaaggcttatcaaatttcctattccattgggtaatgtttgaagctttatgcaaccattgagtttcaaagtg |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |
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| T |
49353310 |
atattgctttgtagttatgattagctgccgaaggcttatcaaatttcctattccattgggtaattttttaagctttatgcaaccattgagtttcaaagtg |
49353211 |
T |
|
| Q |
419 |
tatagattctggagtttgcacaatgagtcaggaaggctcttcaattctctgctt |
472 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
49353210 |
tatagattctggagtttgcacaatgagtcaggaaggctcttcaattctttgctt |
49353157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 139 - 466
Target Start/End: Complemental strand, 49342118 - 49341785
Alignment:
| Q |
139 |
ctctaagttgggaataacgtgaagtggc---atagactttagatttccacaagaagaaatactcaaccactttaggttagaaagttgtatc----ccttc |
231 |
Q |
| |
|
|||||||||||||| ||| |||| |||| |||||||||||| | ||||||||| ||| |||| |||| || |||||||||||||| ||||| |
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|
| T |
49342118 |
ctctaagttgggaaaaacatgaattggcggcatagactttagactcccacaagaaccaatctccaacaacttaagattagaaagttgtatgtattccttc |
49342019 |
T |
|
| Q |
232 |
aagcaacaacgtctctagattgtcacaagaattgactgataaaatttctaaacaagtcaactttgcaatctctttttctggtaaagtatattgctttgta |
331 |
Q |
| |
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||| ||||| | |||||||||||||||||| ||| |||||| ||||||| | | |||||||||||||||||| ||||| |||||| |||| | |||| |
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| T |
49342018 |
aagaaacaaagcctctagattgtcacaagatacgacggataaacattctaaagatgacaactttgcaatctctttgtctgggaaagtagattgatgtgta |
49341919 |
T |
|
| Q |
332 |
gttatgattagctgccgaaggcttatcaaatttcctattccattgggtaatgtttgaagctttatgcaaccattgagtttcaaagtgtatagattctgga |
431 |
Q |
| |
|
||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| | |||||||||| |
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| T |
49341918 |
gttatatagagctgccgaaggctgatcaaatttcctattccattgggtaatgtttgaagctttatgcaaccatcgag-atcaaagtatgcagattctgga |
49341820 |
T |
|
| Q |
432 |
gtttgcacaatgagtcaggaaggctcttcaattct |
466 |
Q |
| |
|
||||||||| ||| | ||| ||||||||||||||| |
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|
| T |
49341819 |
gtttgcacactgaattagggaggctcttcaattct |
49341785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 19031094 - 19031032
Alignment:
| Q |
19 |
aggaaaactcacaagttgtggcaaagattcaagacttagcaacttcagctttaactttgggat |
81 |
Q |
| |
|
||||| ||||||||||| |||||||||| ||||| ||||||||||||| |||||||| ||||| |
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|
| T |
19031094 |
aggaatactcacaagttttggcaaagatacaagatttagcaacttcagttttaacttcgggat |
19031032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 19 - 466
Target Start/End: Original strand, 32782659 - 32783106
Alignment:
| Q |
19 |
aggaaaactcacaagttgtggcaaagattcaagacttagcaacttcagctttaactttgggatttggttctcattgtggaatgacaatttcaacttaggg |
118 |
Q |
| |
|
||||| |||||||||||||||||||||| |||| |||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| || |
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|
| T |
32782659 |
aggaatactcacaagttgtggcaaagatcgaagagttagcaacttcagcttaaactttgggatttggttgtcattgtggaatgacaatttcaacttatgg |
32782758 |
T |
|
| Q |
119 |
caattagtaatgaacaaccactctaagttgggaataacgtgaagtggcatagactttagatttccacaagaagaaatactcaaccactttaggttagaaa |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||| || |||| || ||||||| |
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|
| T |
32782759 |
caattagtaatgaacaaccactctaagttgggaataacatgaagtggcatagactttagattcccacaagaatgtatatacagtgacttcagattagaaa |
32782858 |
T |
|
| Q |
219 |
gttgtatcccttcaagcaacaacgtctctagattgtcacaagaattgactgataaaatttctaaacaagtcaactttgcaatctctttttctggtaaagt |
318 |
Q |
| |
|
||||||| ||||||| || ||| |||||||||||||||||| | |||| || |||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
32782859 |
gttgtattccttcaaacagcaaggtctctagattgtcacaatatgtgacatcaaacctttctaaagaagtcaactttgcaatctctttttctggtaaagt |
32782958 |
T |
|
| Q |
319 |
atattgctttgtagttatgattagctgccgaaggcttatcaaatttcctattccattgggtaatgtttgaagctttatgcaaccattgagtttcaaagtg |
418 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| |||| ||| | |||||| |
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| T |
32782959 |
atattgctttgtagttatgactagctgccgaaggctgatcaaatttcctattccattgggtaatgtttgaagctctatgcatccatcgagatccaaagta |
32783058 |
T |
|
| Q |
419 |
tatagattctggagtttgcacaatgagtcaggaaggctcttcaattct |
466 |
Q |
| |
|
| ||||||||||||||||||| ||| | ||| ||||||||||||||| |
|
|
| T |
32783059 |
tgcagattctggagtttgcacagtgaattagggaggctcttcaattct |
32783106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 80; Significance: 2e-37; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 101 - 466
Target Start/End: Complemental strand, 29744880 - 29744518
Alignment:
| Q |
101 |
gacaatttcaacttagggcaattagtaatgaacaaccactctaagttgggaataacgtgaagtggcatagactttagatttccacaagaagaaatactca |
200 |
Q |
| |
|
||||||||||| ||| ||||||| ||| ||||| | || ||||| |||||||| |||||||||| |||||||||||| | ||||||| |||| ||| |
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|
| T |
29744880 |
gacaatttcaaattattgcaattatcaataaacaaactatccaagtttggaataacatgaagtggcaaagactttagattcctacaagaatcaatattca |
29744781 |
T |
|
| Q |
201 |
accactttaggttagaaagttgtatcccttcaagcaacaacgtctctagattgtcacaagaattgactgataaaatttctaaacaagtcaactttgcaat |
300 |
Q |
| |
|
|| | || || |||| ||||||||| || |||| || || || | |||||||||||||| || ||||||| ||||||| ||||||| || ||||| |
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|
| T |
29744780 |
acaatttaagattaggaagttgtatttctccaagtaatcac---tccaaattgtcacaagaatggatagataaaaattctaaagaagtcaatttggcaat |
29744684 |
T |
|
| Q |
301 |
ctctttttctggtaaagtatattgctttgtagttatgattagctgccgaaggcttatcaaatttcctattccattgggtaatgtttgaagctttatgcaa |
400 |
Q |
| |
|
|||||| ||||| ||| | ||||| ||| ||||| ||||||||||||||| ||||||||||||||||||||||| ||||||| || ||||| ||| |
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|
| T |
29744683 |
ctctttgtctggaaaatcagattgcattgcggttatatgtagctgccgaaggctgatcaaatttcctattccattgggcaatgtttcaaactttaagcat |
29744584 |
T |
|
| Q |
401 |
ccattgagtttcaaagtgtatagattctggagtttgcacaatgagtcaggaaggctcttcaattct |
466 |
Q |
| |
|
||| ||| ||||||| | | |||||| |||||||||| ||| ||||| ||| ||||||||||| |
|
|
| T |
29744583 |
ccaccgagattcaaagattgcaaattctgaagtttgcacactgaatcagggaggatcttcaattct |
29744518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 285 - 466
Target Start/End: Original strand, 29601561 - 29601742
Alignment:
| Q |
285 |
aagtcaactttgcaatctctttttctggtaaagtatattgctttgtagttatgattagctgccgaaggcttatcaaatttcctattccattgggtaatgt |
384 |
Q |
| |
|
||||||| || ||||||||||| ||||| ||| || ||||| |||| ||||| ||| || |||||||| |||||||||||||| |||||||||||| | |
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|
| T |
29601561 |
aagtcaatttggcaatctctttgtctggaaaactagattgcattgtggttatatgtagttgtcgaaggctgatcaaatttcctatcccattgggtaattt |
29601660 |
T |
|
| Q |
385 |
ttgaagctttatgcaaccattgagtttcaaagtgtatagattctggagtttgcacaatgagtcaggaaggctcttcaattct |
466 |
Q |
| |
|
|| |||||||| ||| || | || ||||||| | | |||||| |||||||||| ||| ||||| ||||||||||||||| |
|
|
| T |
29601661 |
ttcaagctttaagcatccctcaagaatcaaagtttgcaaattctgaagtttgcacactgaatcagggaggctcttcaattct |
29601742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 285 - 466
Target Start/End: Complemental strand, 29751733 - 29751552
Alignment:
| Q |
285 |
aagtcaactttgcaatctctttttctggtaaagtatattgctttgtagttatgattagctgccgaaggcttatcaaatttcctattccattgggtaatgt |
384 |
Q |
| |
|
||||||| || ||||||||||| ||||| ||| || ||||| |||| ||||| ||| || |||||||| |||||||||||||| |||||||||||| | |
|
|
| T |
29751733 |
aagtcaatttggcaatctctttgtctggaaaactagattgcattgtggttatatgtagttgtcgaaggctgatcaaatttcctatcccattgggtaattt |
29751634 |
T |
|
| Q |
385 |
ttgaagctttatgcaaccattgagtttcaaagtgtatagattctggagtttgcacaatgagtcaggaaggctcttcaattct |
466 |
Q |
| |
|
|| |||||||| ||| || | || ||||||| | | |||||| |||||||||| ||| || || ||||||||||||||| |
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|
| T |
29751633 |
ttcaagctttaagcatccctcaagaatcaaagtttgcaaattctgaagtttgcacactgaatctgggaggctcttcaattct |
29751552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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