View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11044_high_5 (Length: 223)
Name: NF11044_high_5
Description: NF11044
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11044_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 182; Significance: 1e-98; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 15 - 208
Target Start/End: Original strand, 43880538 - 43880731
Alignment:
| Q |
15 |
atgaacagaagaggagctgatgcaggattatacaaaacaaccagctagaaaccaaaaaggaattcagcacacgcatacccctgcatcagtaccaaaatgc |
114 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43880538 |
atgaacagaagaggagctgatgcaggataatacaaaacaaccagctagaaaccaaaaaggaattcagcacacgcatacccctgcatcagtaccaaaatgc |
43880637 |
T |
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| Q |
115 |
agctgcctacaccaatggaaacagaaaaacaagcctgcgaaaggaggggaaccgcaccaaacagcagcaacagcagaacaacaactgctgcaag |
208 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43880638 |
agcagcctacaccaatggaaacagaaaaacaagcctgcgaaagggggggaaccgcaccaaacagcagcaacagcagaacaacaactgctgcaag |
43880731 |
T |
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