View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11044_low_1 (Length: 704)
Name: NF11044_low_1
Description: NF11044
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11044_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 654; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 654; E-Value: 0
Query Start/End: Original strand, 1 - 673
Target Start/End: Complemental strand, 35245376 - 35244703
Alignment:
| Q |
1 |
gcattggggaagtttaaatttggatggcaagcacttatttgcaattttggctgcacttattattctccctactgtttggttgaaggatcttcgttttgtc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
35245376 |
gcattggggaagtttaaatttggatggcaagcacttatttgcaattttggctgcacttattattctccctaccgtttggttgaaggatcttcgttttgtc |
35245277 |
T |
|
| Q |
101 |
tcctatctctcaggttctctaaaataaaatgattttgatgatcccaaaattt-aagttgtggagacaatactcataatgtctattgaaatgtcaatcctt |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35245276 |
tcctatctctcaggttctctaaaataaaatgattttgatgatcccaaaattttaagttgtggagacaatactcataatgtctattgaaatgtcaatcctt |
35245177 |
T |
|
| Q |
200 |
attagcaagcacttaccgagataacttgtgatgattttgcagctggaggggttgttggtacagctttggttggtgcttgtgtgtatgctgttggaacaag |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
35245176 |
attagcaagcacttaccgagataacttgtgatgattttgcagctggaggggttgttggtactgctttggttggtgcttgtgtgtatgctgttggaacaag |
35245077 |
T |
|
| Q |
300 |
aaaagatgttggcttccatcacactgctccattggtgaactggagtggtgttccatttgcttttggtatttatgggttttgctttgcgggacattcagtt |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35245076 |
aaaagatgttggcttccatcacactgctccattggtgaactggagtggtgttccatttgcttttggtatttatgggttttgctttgcgggacattcagtt |
35244977 |
T |
|
| Q |
400 |
tttcccaatatttatcaatctatggctaacaaaaaagattttacgaaggcaatgctcatatggtatgctacataactttctttgtcagtggaaaccaggg |
499 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35244976 |
tttcccaatatttatcaatctatggctaacaaaaaagattttacgaaggcaatgctcatatggtatgctacataactttctttgtcagtggaaaccaggg |
35244877 |
T |
|
| Q |
500 |
atatttagaaaaggtctgtgatcgtgatctagattgcaggatcaaggttgttggtgtctgtgactgttattgagtctgcattagccacatttgaccatga |
599 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35244876 |
atttttagaaaaggtctgtgatcgtgatctagattgcaggatcaaggttgttggtgtctgtgactgttattgagtctgcattagccacatttgaccatga |
35244777 |
T |
|
| Q |
600 |
ttctgtgtaatattaaagatcttgacacgaccgttaccccgactgcagcttaaaacctcgatagcaacacaaac |
673 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35244776 |
ttctgtgtaatattaaagatcttgacacgaccgttaccccgactgcagcttaaaacctcgatagcaacacaaac |
35244703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 1 - 670
Target Start/End: Complemental strand, 35236665 - 35235961
Alignment:
| Q |
1 |
gcattggggaagtttaaatttggatggcaagcacttatttgcaattttggctgcacttattattctccctactgtttggttgaaggatcttcgttttgtc |
100 |
Q |
| |
|
|||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |
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|
| T |
35236665 |
gcattggggaggtttaaatatggatggcaagcacttatttgcaattttggctgcacttattattctccctactgtttggttgaaggatcttcgtataatc |
35236566 |
T |
|
| Q |
101 |
tcctatctctcaggttctctaaaataaaatgattttgatgatcccaaaattt-aagttgtggagacaatactcataatgtctattgaaa-tgtcaatcct |
198 |
Q |
| |
|
||||||||||||||||||||||| | |||| ||||||| |||| ||||||| |||||||||||||||||||||||||||||||||||| | |||||||| |
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|
| T |
35236565 |
tcctatctctcaggttctctaaactcaaataattttgacaatccgaaaattttaagttgtggagacaatactcataatgtctattgaaaatatcaatcct |
35236466 |
T |
|
| Q |
199 |
tatt--------------agcaagcacttaccgagataacttgtgatgattttgcagctggaggggttgttggtacagctttggttggtgcttgtgtgta |
284 |
Q |
| |
|
|||| ||||||||||||| ||||| ||||||||||||| |||||||||||||||| |||||||||||||||||| | ||||||||| |
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|
| T |
35236465 |
tattttcaacctctctgtagcaagcacttactgagattacttgtgatgattctgcagctggaggggttattggtacagctttggttgctacttgtgtgtt |
35236366 |
T |
|
| Q |
285 |
tgctgttggaacaagaaaagatgttggcttccatcacactgctccattggtgaactggagtggtgttccatttgcttttggtatttatgggttttgcttt |
384 |
Q |
| |
|
|| |||||| ||||||||||||||||| ||||||||||||| || ||| |||||||||||||| ||||||||||||||||||| ||||||||||||||| |
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|
| T |
35236365 |
tgttgttgggacaagaaaagatgttggattccatcacactggtcaatttgtgaactggagtggcattccatttgcttttggtatctatgggttttgcttt |
35236266 |
T |
|
| Q |
385 |
gcgggacattcagtttttcccaatatttatcaatctatggctaacaaaaaagattttacgaaggcaatgctcatatggtatgctacataactttctttgt |
484 |
Q |
| |
|
|| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | |
|
|
| T |
35236265 |
gcaggacattcagttttccccaatatttatcagtctatggctaacaaaaaagattttacgaaggcaataatcatatggtatgctacataactttcttttt |
35236166 |
T |
|
| Q |
485 |
cagtggaaaccaggg-----------------atatttagaaaaggtctgtgatcgtgatctagattgcaggatcaaggttgttggtgtct--gtgactg |
565 |
Q |
| |
|
|||||| ||||| || | |||| |||| ||||| ||| || ||||||||||||| |||||||| ||||||| | ||||||| |
|
|
| T |
35236165 |
cagtggcaaccaaggtttttttttaattttttttttttataaaaagtctgcgatagtaatctagattgcagtgtcaaggtttttggtgttttcgtgactg |
35236066 |
T |
|
| Q |
566 |
ttattgagtctgcattagccacatttgaccatgattctgtgtaatattaaagatcttgacacgaccgttaccccgactgcagcttaaaacctcgatagca |
665 |
Q |
| |
|
|||||||| |||||||||| ||||||||||||||||| || ||||||||||||||||||| | |||||| |||||||| ||||||||| ||||| | |
|
|
| T |
35236065 |
ttattgaggctgcattagctgcatttgaccatgattctatgcaatattaaagatcttgacatggatgttaccgcgactgcaatttaaaaccttgatagta |
35235966 |
T |
|
| Q |
666 |
acaca |
670 |
Q |
| |
|
||||| |
|
|
| T |
35235965 |
acaca |
35235961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 5e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 306 - 435
Target Start/End: Original strand, 15036679 - 15036808
Alignment:
| Q |
306 |
tgttggcttccatcacactgctccattggtgaactggagtggtgttccatttgcttttggtatttatgggttttgctttgcgggacattcagtttttccc |
405 |
Q |
| |
|
|||||| |||||||| |||| || | ||||||| ||||| || ||||||||||| ||||| ||||||||||||||||||| ||||||||||| ||||| |
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|
| T |
15036679 |
tgttggattccatcatactggtcgagtggtgaattggagcggcattccatttgctattggtgtttatgggttttgctttgcaggacattcagtctttcca |
15036778 |
T |
|
| Q |
406 |
aatatttatcaatctatggctaacaaaaaa |
435 |
Q |
| |
|
||||| || || ||||||||| |||||||| |
|
|
| T |
15036779 |
aatatataccagtctatggctgacaaaaaa |
15036808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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