View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11044_low_2 (Length: 523)
Name: NF11044_low_2
Description: NF11044
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11044_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 158; Significance: 8e-84; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 158; E-Value: 8e-84
Query Start/End: Original strand, 114 - 399
Target Start/End: Complemental strand, 4738923 - 4738644
Alignment:
| Q |
114 |
aatgttcaaataaatcaagaacgataattttattgaatatggtgaaaacccnnnnnnngagggagtttcaataaggtttttgacattatttgtttataaa |
213 |
Q |
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| T |
4738923 |
aatgttcaaataaatcaagaatgatatttttattgaatatggtgaaaacccaaaaaaagagggagtttgaataaggtttttgacattatttatttataaa |
4738824 |
T |
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| Q |
214 |
attgtatataatgtttcttttgaaagnnnnnnnnngcatgttttaaaacacgtttgaaaaagatgattgattacatgttttaaatagaagaattgaaaga |
313 |
Q |
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| T |
4738823 |
attgtatataatgtttcttttgaaaaagaaaaa---catgttttaaaacacgtttcaaaaagatgatc----acaagttttaaatagaagaattgaaaga |
4738731 |
T |
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| Q |
314 |
aagagacgatcaacgca-gttacaagttacactctgaagatacaaataattttgctcaaaatactagtggaaattaatttataaaaa |
399 |
Q |
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| T |
4738730 |
aagaggcgatcaaagcaagttacaagttacactcttaagatacaaataattttgctcaaaatattagtggaaattaatttataaaaa |
4738644 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 4739005 - 4738921
Alignment:
| Q |
1 |
tccagcaatcatgggagtggaaaagtattttctccatgttggttcatgcgaatggaatggaaaaaacctcttttatagcatgaat |
85 |
Q |
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| T |
4739005 |
tccagcaatcatggtagtggaaaagtattttctccatgttggttcatgtgaatggaatggaaaaaccctcttttatagcatgaat |
4738921 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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