View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11044_low_3 (Length: 394)
Name: NF11044_low_3
Description: NF11044
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11044_low_3 |
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| [»] scaffold0008 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 9 - 378
Target Start/End: Complemental strand, 2834462 - 2834093
Alignment:
| Q |
9 |
agcagagaaaagtgtgaatccagccaaatttcgcagtctagtattgatctttgactcatagtatgtgagtattactattgttccaattgcaactggttga |
108 |
Q |
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| T |
2834462 |
agcaaagaaaagtgtgaatccagccaaatttcgcagtctagtattgatctttgactcatagtatgtgagtattactattgttccaattgcaactggttga |
2834363 |
T |
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| Q |
109 |
taaaccaatgtaagtacccttgaaggatgatatttcttcagagtgaaacaaagcatataatcaataattcatctcatatttcatgaagtctcaaataatt |
208 |
Q |
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| T |
2834362 |
taaaccaatgtaagtacccttgaaggatgatatttcttcagagtgaaacaaagcatataatcaataattcatctcatatttcatgaagtctcaaataatt |
2834263 |
T |
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| Q |
209 |
taatcagaaacagaaactttccagttgacattctttgtaagacgagcatttaactattgttcttaagaaaaatttggtacaaccatgttaagccgagacg |
308 |
Q |
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| T |
2834262 |
taatcagaaacagaaactttccagttgacattctttgtaagacgagcatttaactattgttcttaagaaaaatttggtacaaccatgttaagctgagacg |
2834163 |
T |
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| Q |
309 |
ctagttacttaccgggaacaatttgtaatagtaatctcctatggtcaacatgctgttccatgcaacaagg |
378 |
Q |
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| T |
2834162 |
ctagttacttaccgggaacaaattgtaatagtaatctcctatggtcaacatgctgttccatgcaacaagg |
2834093 |
T |
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Target: scaffold0008 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0008
Description:
Target: scaffold0008; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 145
Target Start/End: Original strand, 64321 - 64417
Alignment:
| Q |
49 |
gtattgatctttgactcatagtatgtgagtattactattgttccaattgcaactggttgataaaccaatgtaagtacccttgaaggatgatatttct |
145 |
Q |
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| T |
64321 |
gtattgatttttgcctcatagtaagtaagaattgctagtgttccaactgcaaatggctgatatacaagagtaagcaccctagagggatgatatttct |
64417 |
T |
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