View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11045_high_12 (Length: 263)
Name: NF11045_high_12
Description: NF11045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11045_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 19 - 252
Target Start/End: Original strand, 8554083 - 8554316
Alignment:
| Q |
19 |
cattgttgcgagaaaggatattattttggatggttcacacccttgtttattatatggatatggcggttataacattagtcttacaccatcttttagcgtc |
118 |
Q |
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| T |
8554083 |
cattgttgcgagaaaggatattattttggatggttcacacccttgtttattatatggatatggcggttataacattagtcttacaccatcttttagcgtc |
8554182 |
T |
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| Q |
119 |
agccatattgtcctagcaagatatttaggttttgttttctgcatagcaaatatccgtggcggtggagaatacggagaggaatggcataaagcagcatccc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8554183 |
agccatattgtcctagcaagatatttaggttttgttttctgcatagcaaatatccgtggcggtggagaatacggagaggaatggcataaagcagcatccc |
8554282 |
T |
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| Q |
219 |
tttcaaacaagcaaaattgctttgatgacttcat |
252 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
8554283 |
tttcaaacaagcaaaattgctttgatgacttcat |
8554316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 19 - 252
Target Start/End: Original strand, 8558558 - 8558791
Alignment:
| Q |
19 |
cattgttgcgagaaaggatattattttggatggttcacacccttgtttattatatggatatggcggttataacattagtcttacaccatcttttagcgtc |
118 |
Q |
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||||||| | ||||||||||| |||||| ||||||||||||||||||| |||||||||||||| |||| |||| | ||||||||||||| ||| || ||| |
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| T |
8558558 |
cattgtttccagaaaggatataattttgaatggttcacacccttgtttgttatatggatatggtggttttaacgtcagtcttacaccatttttcagtgtc |
8558657 |
T |
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| Q |
119 |
agccatattgtcctagcaagatatttaggttttgttttctgcatagcaaatatccgtggcggtggagaatacggagaggaatggcataaagcagcatccc |
218 |
Q |
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| T |
8558658 |
agtcgtattgtccttgcaaggcatttaggttctgttatctgcatagcaaatattcgtggtggtggagaatacggagaggagtggcataaagcaggatccc |
8558757 |
T |
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| Q |
219 |
tttcaaacaagcaaaattgctttgatgacttcat |
252 |
Q |
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|||| || |||||||||||||||||||||||||| |
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| T |
8558758 |
tttcgaaaaagcaaaattgctttgatgacttcat |
8558791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 82; Significance: 8e-39; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 19 - 252
Target Start/End: Original strand, 53738482 - 53738715
Alignment:
| Q |
19 |
cattgttgcgagaaaggatattattttggatggttcacacccttgtttattatatggatatggcggttataacattagtcttacaccatcttttagcgtc |
118 |
Q |
| |
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||||||||| | |||||||||| |||| |||||||||||||| ||| | |||||||||||||| |||| |||||| ||| |||||||||| || || || |
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| T |
53738482 |
cattgttgcaaaaaaggatattgttttcgatggttcacacccgtgtctgttatatggatatggtggttttaacatcagtattacaccatccttcagtgtt |
53738581 |
T |
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| Q |
119 |
agccatattgtcctagcaagatatttaggttttgttttctgcatagcaaatatccgtggcggtggagaatacggagaggaatggcataaagcagcatccc |
218 |
Q |
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|| | ||||| || ||| | ||||||||||||||| |||||| || ||||| ||||| ||||||||||| || || |||||||||||||||| |||| |
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| T |
53738582 |
agtcgcattgtactcacaaaacatttaggttttgtttactgcattgcgaatattcgtggtggtggagaatatggggaagaatggcataaagcaggttccc |
53738681 |
T |
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| Q |
219 |
tttcaaacaagcaaaattgctttgatgacttcat |
252 |
Q |
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|| | || || || |||||||||||||||||||| |
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| T |
53738682 |
ttgctaaaaaacagaattgctttgatgacttcat |
53738715 |
T |
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