View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11045_high_19 (Length: 240)
Name: NF11045_high_19
Description: NF11045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11045_high_19 |
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Alignment Details
Target: chr2 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 15 - 225
Target Start/End: Complemental strand, 30756645 - 30756435
Alignment:
| Q |
15 |
cacagaagctcaaaaacaagcaagactagccatcctcgagctagcaaacatgataagcatccctatgtcacttcacgccgtcgtccgtctcaacgtcgcc |
114 |
Q |
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| T |
30756645 |
cacagaagctcaaaaacaagcaagactagccatcctcgagctagcaaacatgataagcattcctatgtcacttcacgccgtcgtccgtctcaacgtcgcc |
30756546 |
T |
|
| Q |
115 |
gacgcaatatgggaaggtggtgcaaacgcgccactctcagctgagcagatcctagcgcgtgttgttcctggtggcggtggcgatgccgagaatcttcagc |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |
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| T |
30756545 |
gacgcaatatgggaaggtggtgcaaacgcgccactctctgctgctcagatcctagcgcgtgttgttcctggtggcggcggcgacgccgagaatcttcagc |
30756446 |
T |
|
| Q |
215 |
gcgtgttacgt |
225 |
Q |
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| ||||||||| |
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| T |
30756445 |
gagtgttacgt |
30756435 |
T |
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