View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11045_high_20 (Length: 222)
Name: NF11045_high_20
Description: NF11045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11045_high_20 |
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Alignment Details
Target: chr1 (Bit Score: 173; Significance: 3e-93; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 22 - 210
Target Start/End: Complemental strand, 17701548 - 17701360
Alignment:
| Q |
22 |
caccctatttccattttcatcattcaatcgatcacaaacccaaaaacaactatgaatatcatcatggtaatgaaattgagaaacaccaaggttcaaaccc |
121 |
Q |
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| T |
17701548 |
caccctatttccattttcatcattcaatcgatcacaaacccaaaaacaactatgaatatcatcatggtaatgaaattgagaaacaccaagattcaaaccc |
17701449 |
T |
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| Q |
122 |
taagttcaaaccctatagtttttctgtacactctcctgcgccaatcgctcacaacatcatgaacaaacactattcttcaccttcttctc |
210 |
Q |
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| T |
17701448 |
taagttcaaaccctatagtttttctgtacactctcctgagcaaatcactcacaacatcatgaacaaacactattcttcaccttcttctc |
17701360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 22 - 210
Target Start/End: Original strand, 17662546 - 17662719
Alignment:
| Q |
22 |
caccctatttccattttcatcattcaatcgatcacaaacccaaaaacaactatgaatatcatcatggtaatgaaattgagaaacaccaaggttcaaaccc |
121 |
Q |
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| T |
17662546 |
caccctatttccattttcatcattctattgatcacaaacccaaaaacaactatgaatatcatcatggtactgaaattcagaaaca--------------- |
17662630 |
T |
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| Q |
122 |
taagttcaaaccctatag-tttttctgtacactctcctgcgccaatcgctcacaacatcatgaacaaacactattcttcaccttcttctc |
210 |
Q |
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| T |
17662631 |
-aggttcaaaccctatagttttttttgtacactctcctgagccaaacactcacaacatcatgaacaaaccctattcttcaccttcttctc |
17662719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 210
Target Start/End: Complemental strand, 22667820 - 22667792
Alignment:
| Q |
182 |
gaacaaacactattcttcaccttcttctc |
210 |
Q |
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| T |
22667820 |
gaacaaacactattcttcaccttcttctc |
22667792 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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