View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11045_high_4 (Length: 433)

Name: NF11045_high_4
Description: NF11045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11045_high_4
NF11045_high_4
[»] chr4 (40 HSPs)
chr4 (178-350)||(372703-372874)
chr4 (124-295)||(49261745-49261918)
chr4 (124-350)||(13855969-13856193)
chr4 (128-350)||(13867691-13867910)
chr4 (124-284)||(31936296-31936454)
chr4 (124-258)||(2777929-2778062)
chr4 (72-150)||(53265889-53265967)
chr4 (177-280)||(42039021-42039124)
chr4 (201-284)||(31823039-31823122)
chr4 (123-284)||(38131392-38131552)
chr4 (69-150)||(887102-887185)
chr4 (124-196)||(37694573-37694644)
chr4 (124-259)||(49065549-49065683)
chr4 (71-150)||(28796715-28796796)
chr4 (171-263)||(40962687-40962780)
chr4 (124-263)||(24608148-24608286)
chr4 (123-260)||(27761127-27761263)
chr4 (72-136)||(40312709-40312773)
chr4 (72-136)||(40322785-40322849)
chr4 (69-148)||(47043893-47043973)
chr4 (124-186)||(8932529-8932589)
chr4 (124-259)||(9242917-9243051)
chr4 (124-295)||(21713127-21713297)
chr4 (102-148)||(42099462-42099509)
chr4 (178-295)||(32935692-32935809)
chr4 (69-114)||(33161723-33161768)
chr4 (124-156)||(42118923-42118955)
chr4 (237-284)||(18414149-18414196)
chr4 (307-350)||(49261668-49261711)
chr4 (124-159)||(52032780-52032815)
chr4 (113-147)||(12572506-12572540)
chr4 (124-157)||(9958202-9958235)
chr4 (124-153)||(13856167-13856196)
chr4 (170-262)||(16525075-16525168)
chr4 (96-149)||(28796690-28796743)
chr4 (96-149)||(33161700-33161753)
chr4 (103-189)||(47177989-47178073)
chr4 (122-150)||(26973374-26973402)
chr4 (124-196)||(34939420-34939491)
chr4 (124-156)||(37694618-37694650)
[»] chr8 (12 HSPs)
chr8 (124-295)||(43835287-43835458)
chr8 (123-284)||(34471566-34471725)
chr8 (124-258)||(1931343-1931478)
chr8 (124-196)||(15743250-15743321)
chr8 (72-150)||(43635226-43635305)
chr8 (122-196)||(4759269-4759342)
chr8 (171-262)||(3964010-3964100)
chr8 (124-192)||(5913181-5913248)
chr8 (307-350)||(43835210-43835253)
chr8 (96-149)||(4640750-4640803)
chr8 (90-150)||(28703956-28704017)
chr8 (124-156)||(42182609-42182641)
[»] chr7 (28 HSPs)
chr7 (17-150)||(31826128-31826261)
chr7 (140-291)||(35126202-35126353)
chr7 (124-231)||(29714254-29714359)
chr7 (171-261)||(21153755-21153845)
chr7 (124-235)||(8260834-8260945)
chr7 (124-196)||(39283944-39284015)
chr7 (171-284)||(41219348-41219461)
chr7 (90-150)||(38790966-38791026)
chr7 (123-235)||(27874047-27874158)
chr7 (173-284)||(18239380-18239491)
chr7 (124-261)||(39476483-39476619)
chr7 (124-159)||(33802929-33802964)
chr7 (165-235)||(37524179-37524249)
chr7 (96-149)||(1537201-1537254)
chr7 (104-148)||(46302336-46302381)
chr7 (90-150)||(48211894-48211955)
chr7 (69-148)||(1537151-1537231)
chr7 (124-156)||(8260828-8260860)
chr7 (178-258)||(21613032-21613112)
chr7 (166-196)||(40144844-40144874)
chr7 (124-184)||(2914719-2914777)
chr7 (69-114)||(26502319-26502364)
chr7 (72-150)||(26502333-26502413)
chr7 (72-150)||(26590301-26590381)
chr7 (69-114)||(26590350-26590395)
chr7 (124-152)||(2912215-2912243)
chr7 (124-156)||(31267984-31268016)
chr7 (124-156)||(33802923-33802955)
[»] chr3 (27 HSPs)
chr3 (124-294)||(50561399-50561567)
chr3 (124-263)||(6755709-6755847)
chr3 (126-284)||(39415302-39415459)
chr3 (124-295)||(47560335-47560509)
chr3 (123-284)||(25574780-25574940)
chr3 (124-263)||(6462950-6463088)
chr3 (123-284)||(48086796-48086956)
chr3 (69-148)||(16967884-16967966)
chr3 (124-196)||(49742160-49742231)
chr3 (69-148)||(53824383-53824465)
chr3 (69-149)||(35485338-35485419)
chr3 (124-212)||(49501576-49501664)
chr3 (124-196)||(23029602-23029673)
chr3 (129-263)||(25745132-25745265)
chr3 (72-135)||(42947472-42947535)
chr3 (96-149)||(53824360-53824413)
chr3 (124-156)||(36182825-36182857)
chr3 (124-156)||(50561678-50561710)
chr3 (124-184)||(53401547-53401606)
chr3 (223-331)||(11161868-11161975)
chr3 (103-192)||(33448576-33448663)
chr3 (96-149)||(42387881-42387935)
chr3 (96-150)||(42993636-42993690)
chr3 (123-156)||(2182594-2182627)
chr3 (126-234)||(41649903-41650011)
chr3 (69-114)||(42387866-42387911)
chr3 (124-156)||(36182819-36182851)
[»] chr6 (13 HSPs)
chr6 (128-267)||(23912240-23912378)
chr6 (124-263)||(13312541-13312679)
chr6 (69-150)||(14830485-14830567)
chr6 (124-196)||(30634176-30634247)
chr6 (173-284)||(319227-319338)
chr6 (178-267)||(17399041-17399131)
chr6 (96-149)||(14830462-14830515)
chr6 (69-148)||(14153447-14153527)
chr6 (124-195)||(1077587-1077656)
chr6 (96-149)||(14153424-14153477)
chr6 (96-149)||(16444339-16444392)
chr6 (165-201)||(9521407-9521443)
chr6 (124-156)||(13312535-13312567)
[»] chr5 (23 HSPs)
chr5 (124-295)||(11125746-11125916)
chr5 (170-295)||(19043885-19044010)
chr5 (138-261)||(20202605-20202726)
chr5 (171-284)||(41758685-41758798)
chr5 (172-262)||(2599801-2599891)
chr5 (75-149)||(19401903-19401977)
chr5 (124-196)||(1081949-1082020)
chr5 (171-295)||(25898635-25898759)
chr5 (69-150)||(3461486-3461569)
chr5 (173-261)||(10532795-10532883)
chr5 (124-196)||(12144001-12144072)
chr5 (124-267)||(16100835-16100978)
chr5 (124-294)||(1172899-1173068)
chr5 (103-150)||(40017255-40017303)
chr5 (96-150)||(6270697-6270753)
chr5 (124-261)||(6427238-6427374)
chr5 (69-148)||(1974249-1974329)
chr5 (124-196)||(2786687-2786758)
chr5 (124-159)||(8688171-8688206)
chr5 (106-148)||(1975186-1975230)
chr5 (124-157)||(24531027-24531060)
chr5 (96-132)||(1974226-1974262)
chr5 (171-263)||(28784764-28784856)
[»] chr1 (28 HSPs)
chr1 (123-284)||(41871686-41871846)
chr1 (126-267)||(47983638-47983778)
chr1 (168-284)||(49597190-49597306)
chr1 (124-263)||(5770556-5770694)
chr1 (124-234)||(10308428-10308537)
chr1 (171-281)||(11012136-11012246)
chr1 (124-261)||(23602952-23603090)
chr1 (69-150)||(39650289-39650373)
chr1 (171-284)||(48566758-48566871)
chr1 (124-259)||(3660175-3660309)
chr1 (173-284)||(9343499-9343610)
chr1 (126-259)||(21482862-21482994)
chr1 (171-267)||(18843968-18844064)
chr1 (124-196)||(33686605-33686676)
chr1 (96-150)||(47485508-47485564)
chr1 (124-263)||(5766817-5766955)
chr1 (173-260)||(18178920-18179007)
chr1 (124-295)||(39222657-39222827)
chr1 (201-284)||(46178671-46178754)
chr1 (96-149)||(39650266-39650319)
chr1 (124-196)||(12926782-12926853)
chr1 (124-159)||(1671423-1671458)
chr1 (124-159)||(30858451-30858486)
chr1 (103-196)||(20447100-20447191)
chr1 (103-196)||(20532863-20532954)
chr1 (127-156)||(37708052-37708081)
chr1 (124-152)||(5770668-5770696)
chr1 (124-156)||(23603064-23603096)
[»] chr2 (20 HSPs)
chr2 (69-150)||(22495976-22496058)
chr2 (124-294)||(29132598-29132767)
chr2 (123-281)||(29908456-29908613)
chr2 (72-150)||(11713055-11713133)
chr2 (173-295)||(13785046-13785168)
chr2 (69-150)||(42121895-42121978)
chr2 (201-295)||(24937359-24937453)
chr2 (201-295)||(25686015-25686109)
chr2 (124-212)||(16710248-16710335)
chr2 (124-196)||(41192444-41192515)
chr2 (131-194)||(37057161-37057223)
chr2 (125-234)||(5290722-5290831)
chr2 (171-261)||(28266007-28266097)
chr2 (124-196)||(5814596-5814668)
chr2 (96-149)||(18394925-18394978)
chr2 (124-156)||(6903821-6903853)
chr2 (124-212)||(1887873-1887961)
chr2 (96-149)||(42121948-42122001)
chr2 (172-212)||(12874244-12874284)
chr2 (124-156)||(30398214-30398246)
[»] scaffold0223 (1 HSPs)
scaffold0223 (172-294)||(16045-16168)
[»] scaffold1455 (1 HSPs)
scaffold1455 (72-150)||(277-355)
[»] scaffold0861 (1 HSPs)
scaffold0861 (174-261)||(3721-3808)
[»] scaffold0217 (1 HSPs)
scaffold0217 (124-281)||(25553-25710)
[»] scaffold0753 (1 HSPs)
scaffold0753 (171-259)||(3999-4088)


Alignment Details
Target: chr4 (Bit Score: 135; Significance: 3e-70; HSPs: 40)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 178 - 350
Target Start/End: Original strand, 372703 - 372874
Alignment:
Q  178 ttaagtcacgcaccactgacatgtgcgtgagttaatccacgcaggttggccggtggtctgagcacaagaacacacgttttttggacggtgatcaggtttt 277  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  372703 ttaagtcacgcaccactggcatgtgcgtgagttaatccacgcaggttggccggtggtctgagctcaagaacacacgttttttggacggtgatcaggtttt 372802  T
Q  278 caaccttgattctacacgnnnnnnnactgcatttattgtagttataacatatgttaccatttccacctataaa 350  Q
    ||||||||||||||||||       |||||||||||||||||||||||||||||||||||| |||||||||||    
T  372803 caaccttgattctacacg-ttttttactgcatttattgtagttataacatatgttaccattcccacctataaa 372874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 124 - 295
Target Start/End: Complemental strand, 49261918 - 49261745
Alignment:
Q  124 agttaagtcacgcagcgtgacttaactcacgcacctagtagagctcagcgtgacttaagtcacgcaccactgacatgtgcgtgagttaatccacgcaggt 223  Q
    |||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||  |||||| ||||||||||    
T  49261918 agttaagtcacgcagcatgacttaactcacgcacctaatagagttcagcgtgacttaagtcacgcaccactgacatgtgcgcaagttaacccacgcaggt 49261819  T
Q  224 tggccggtggtctgag--cacaagaacacacgttttttggacggtgatcaggttttcaaccttgattctacacg 295  Q
    |||||| |||||||||  | |||||||||||||||||||||||||| |||||||||||| ||||||| ||||||    
T  49261818 tggccgatggtctgagctctcaagaacacacgttttttggacggtggtcaggttttcaatcttgattttacacg 49261745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 124 - 350
Target Start/End: Complemental strand, 13856193 - 13855969
Alignment:
Q  124 agttaagtcacgcagcgtgacttaactcacgcacctagtagagctcagcgtgacttaagtcacgcaccactgacatgtgcgtgagttaatccacgcaggt 223  Q
    ||||||||||||| |||||||||||||||  |||||| |||  ||||||||||||||||||||||| ||||| |   |||   ||||||  |||||||||    
T  13856193 agttaagtcacgctgcgtgacttaactcatccacctaatag--ctcagcgtgacttaagtcacgcatcactggccgatgcacaagttaactcacgcaggt 13856096  T
Q  224 tggccggtggtctgagcacaagaacacacgttttttggacggtgatcaggttttcaaccttgattctacacgnnnnnnnactgcatttattgtagttata 323  Q
    ||||||||||||||||| |||||||||| |||||||||| |||| |||| ||||||||||||||| ||||||       |||  ||| ||||||||||||    
T  13856095 tggccggtggtctgagctcaagaacacaggttttttggatggtggtcagcttttcaaccttgattttacacgttttttgactatattaattgtagttata 13855996  T
Q  324 acatatgttaccatttccacctataaa 350  Q
    || |||||||||||| |||||||||||    
T  13855995 acctatgttaccattcccacctataaa 13855969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 128 - 350
Target Start/End: Complemental strand, 13867910 - 13867691
Alignment:
Q  128 aagtcacgcagcgtgacttaactcacgcacctagtagagctcagcgtgacttaagtcacgcaccactgacatgtgcgtgagttaatccacgcaggttggc 227  Q
    ||||||||| ||||||||||||||| ||||||| |||  |||||| |||||||||||||||||||||  |  ||||| ||| |||  |||||| ||||||    
T  13867910 aagtcacgctgcgtgacttaactcatgcacctaatag--ctcagcatgacttaagtcacgcaccactagccggtgcgcgagctaactcacgcaagttggc 13867813  T
Q  228 cggtggtctgagcacaagaacacacgttttttggacggtgatcaggttttcaaccttgattctacacgnnnnnnnactgcatttattgtagttataacat 327  Q
    || |||||||||| ||||||||| ||||||||||| |||| |||| ||||||||||||||| ||||||       |||  |||||||||||||||||| |    
T  13867812 cgatggtctgagc-caagaacacgcgttttttggatggtggtcagcttttcaaccttgattttacacgttttttgactatatttattgtagttataacct 13867714  T
Q  328 atgttaccatttccacctataaa 350  Q
    ||||||||||| |||||||||||    
T  13867713 atgttaccattcccacctataaa 13867691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 124 - 284
Target Start/End: Complemental strand, 31936454 - 31936296
Alignment:
Q  124 agttaagtcacgcagcgtgacttaactcacgcacctagtagagctcagcgtgacttaagtcacgcaccactgacatgtgcgtgagttaatccacgcaggt 223  Q
    |||||||||||||  | |||||||||||||||||||  ||  |||  | ||||||||||||||||||||||| | || ||| |||||||  |||||||||    
T  31936454 agttaagtcacgcgacttgacttaactcacgcacct--tattgctttgtgtgacttaagtcacgcaccactggcctgggcgcgagttaactcacgcaggt 31936357  T
Q  224 tggccggtggtctgagcacaagaacacacgttttttggacggtgatcaggttttcaacctt 284  Q
    |||||| |||||||||| ||| ||||||||||||||| ||| |  ||||||||||||||||    
T  31936356 tggccgatggtctgagctcaaaaacacacgttttttgaacgatagtcaggttttcaacctt 31936296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 124 - 258
Target Start/End: Original strand, 2777929 - 2778062
Alignment:
Q  124 agttaagtcacgcagcgtgacttaactcacgcacctagtagagctcagcgtgacttaagtcacgcaccactgacatgtgcgtgagttaatccacgcaggt 223  Q
    ||||||||||||||||||||||||||||||||||||  || || || |||| ||||||||||| | |||||| | |||||| |||||||  |||||| ||    
T  2777929 agttaagtcacgcagcgtgacttaactcacgcaccttata-agttctgcgtaacttaagtcacacgccactggcctgtgcgcgagttaactcacgcaagt 2778027  T
Q  224 tggccggtggtctgagcacaagaacacacgttttt 258  Q
    ||||||||||||||  | ||| |||| ||||||||    
T  2778028 tggccggtggtctgtcctcaataacaaacgttttt 2778062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 72 - 150
Target Start/End: Original strand, 53265889 - 53265967
Alignment:
Q  72 tatgttaagttacgctatgtgacataacaagcgctagtgtattttttacctaagttaagtcacgcagcgtgacttaact 150  Q
    |||||||||| |||||| ||||| ||||| ||||||||||||||| |||||||||||||||||| ||||||||||||||    
T  53265889 tatgttaagtcacgctacgtgacttaacatgcgctagtgtattttatacctaagttaagtcacgtagcgtgacttaact 53265967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 177 - 280
Target Start/End: Original strand, 42039021 - 42039124
Alignment:
Q  177 cttaagtcacgcaccactgacatgtgcgtgagttaatccacgcaggttggccggtggtctgagcacaagaacacacgttttttggacggtgatcaggttt 276  Q
    |||| |||||||||||||| | |||||| |||||||  |||||| |||||||||||||| || |  ||||||| ||||||||||||||||| ||||||||    
T  42039021 cttatgtcacgcaccactggcctgtgcgcgagttaactcacgcacgttggccggtggtcagaactgaagaacagacgttttttggacggtgttcaggttt 42039120  T
Q  277 tcaa 280  Q
    ||||    
T  42039121 tcaa 42039124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 201 - 284
Target Start/End: Original strand, 31823039 - 31823122
Alignment:
Q  201 tgcgtgagttaatccacgcaggttggccggtggtctgagcacaagaacacacgttttttggacggtgatcaggttttcaacctt 284  Q
    ||||||||||||  |||||| |||||||||||||| || |  ||||||| ||||||||||||||||| ||||||||||||||||    
T  31823039 tgcgtgagttaactcacgcacgttggccggtggtcagaactgaagaacaaacgttttttggacggtggtcaggttttcaacctt 31823122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 123 - 284
Target Start/End: Original strand, 38131392 - 38131552
Alignment:
Q  123 aagttaagtcacgcagcgtgacttaactcacgcacctagtagagctcagcgtgacttaagtcacgcaccactgacatgtgcgtgagttaatccacgcagg 222  Q
    |||||||||||||| || ||||||||||  |||||||  || | ||| | ||||||||||||||||||||| | | | |||  |||||||  |||||| |    
T  38131392 aagttaagtcacgctgcatgacttaacttgcgcaccttcta-acctctgtgtgacttaagtcacgcaccacgggcctatgcacgagttaactcacgcacg 38131490  T
Q  223 ttggccggtggtctgagcacaagaacacacgttttttggacggtgatcaggttttcaacctt 284  Q
    || ||||||||||  | |  ||||||| ||||||||||||||||| |||||||||| |||||    
T  38131491 ttagccggtggtcacaactgaagaacaaacgttttttggacggtggtcaggttttcgacctt 38131552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 69 - 150
Target Start/End: Complemental strand, 887185 - 887102
Alignment:
Q  69 acctatgttaagttacgctatgtgacataacaagcgctagtgtatttttt--acctaagttaagtcacgcagcgtgacttaact 150  Q
    ||||||||| ||||||||||  |||| ||||| ||||||||| |||||||  ||||||||||||||||| ||||||||||||||    
T  887185 acctatgttgagttacgctacatgacttaacatgcgctagtgaattttttttacctaagttaagtcacgtagcgtgacttaact 887102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 124 - 196
Target Start/End: Complemental strand, 37694644 - 37694573
Alignment:
Q  124 agttaagtcacgcagcgtgacttaactcacgcacctagtagagctcagcgtgacttaagtcacgcaccactga 196  Q
    ||||||||||||||||||||||||||||||||||||   | ||||| || |||||||||||||||||||||||    
T  37694644 agttaagtcacgcagcgtgacttaactcacgcacctcaca-agctctgcatgacttaagtcacgcaccactga 37694573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 124 - 259
Target Start/End: Complemental strand, 49065683 - 49065549
Alignment:
Q  124 agttaagtcacgcagcgtgacttaactcacgcacctagtagagctcagcgtgacttaagtcacgcaccactgacatgtgcgtgagttaatccacgcaggt 223  Q
    ||||||||||||  |||||||||||||  |||||||  || | ||  ||||||||||||||||||||||||| | | |||| |||||||  ||||||  |    
T  49065683 agttaagtcacgttgcgtgacttaactagcgcaccttataaa-ctatgcgtgacttaagtcacgcaccactggcctatgcgcgagttaactcacgcacct 49065585  T
Q  224 tggccggtggtctgagcacaagaacacacgtttttt 259  Q
    |||||||||||| ||||  ||||||| |||||||||    
T  49065584 tggccggtggtcagagctgaagaacaaacgtttttt 49065549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 71 - 150
Target Start/End: Original strand, 28796715 - 28796796
Alignment:
Q  71 ctatgttaagttacgctatgtgacataacaagcgctagtgtatttttt--acctaagttaagtcacgcagcgtgacttaact 150  Q
    ||||||||||| ||||||  |||| ||||| |||||||||||||||||  | ||||||||||||||| ||||||||||||||    
T  28796715 ctatgttaagtcacgctacatgacttaacatgcgctagtgtattttttttatctaagttaagtcacgtagcgtgacttaact 28796796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 171 - 263
Target Start/End: Complemental strand, 40962780 - 40962687
Alignment:
Q  171 gcgtgacttaagtcacgcaccactgacatgtgcgtgagttaatccacgcaggttggccgg-tggtctgagcacaagaacacacgttttttggac 263  Q
    |||||| ||||||||| |||||||| ||| |||  |||||||  |||||||||||||||| ||||| |||| |||||| |||||||||||||||    
T  40962780 gcgtgagttaagtcacacaccactggcatttgcacgagttaactcacgcaggttggccggttggtcagagctcaagaatacacgttttttggac 40962687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 124 - 263
Target Start/End: Complemental strand, 24608286 - 24608148
Alignment:
Q  124 agttaagtcacgcagcgtgacttaactcacgcacctagtagagctcagcgtgacttaagtcacgcaccactgacatgtgcgtgagttaatccacgcaggt 223  Q
    |||||||| |||||||| |||||||||  |||||||  || | ||  | |||| |||||||||||| |||||  ||||||| |||||||  |||||| ||    
T  24608286 agttaagttacgcagcgagacttaactagcgcaccttata-atctttgtgtgagttaagtcacgcatcactggtatgtgcgcgagttaactcacgcaagt 24608188  T
Q  224 tggccggtggtctgagcacaagaacacacgttttttggac 263  Q
    |||||||||||  |||| ||| |||||||| |||||||||    
T  24608187 tggccggtggttagagctcaaaaacacacgctttttggac 24608148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 123 - 260
Target Start/End: Complemental strand, 27761263 - 27761127
Alignment:
Q  123 aagttaagtcacgcagcgtgacttaactcacgcacctagtagagctcagcgtgacttaagtcacgcaccactgacatgtgcgtgagttaatccacgcagg 222  Q
    |||||||||||||| |||||| |||| |  |||||||  || | ||| ||||||||||||||||||||||||  | | |||| |||||||  ||| || |    
T  27761263 aagttaagtcacgctgcgtgatttaatttgcgcaccttata-atctctgcgtgacttaagtcacgcaccactagcctatgcgcgagttaactcacacacg 27761165  T
Q  223 ttggccggtggtctgagcacaagaacacacgttttttg 260  Q
    ||||||||| ||| || | |||||||| ||||||||||    
T  27761164 ttggccggtagtcagaactcaagaacaaacgttttttg 27761127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 72 - 136
Target Start/End: Complemental strand, 40312773 - 40312709
Alignment:
Q  72 tatgttaagttacgctatgtgacataacaagcgctagtgtattttttacctaagttaagtcacgc 136  Q
    ||||||| || |||||| ||||| ||||| |||||||| |||||| |||||||||||||||||||    
T  40312773 tatgttaggtcacgctacgtgacttaacatgcgctagtatattttgtacctaagttaagtcacgc 40312709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 72 - 136
Target Start/End: Complemental strand, 40322849 - 40322785
Alignment:
Q  72 tatgttaagttacgctatgtgacataacaagcgctagtgtattttttacctaagttaagtcacgc 136  Q
    ||||||| || |||||| ||||| ||||| |||||||| |||||| |||||||||||||||||||    
T  40322849 tatgttaggtcacgctacgtgacttaacatgcgctagtatattttgtacctaagttaagtcacgc 40322785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 69 - 148
Target Start/End: Complemental strand, 47043973 - 47043893
Alignment:
Q  69 acctatgttaagttacgctatgtgacataacaagcgctagtgtatttttt-acctaagttaagtcacgcagcgtgacttaa 148  Q
    |||||||||||||  ||||| ||||  ||||| ||||||||||||||||| ||||||||||||||| | || |||||||||    
T  47043973 acctatgttaagtcgcgctacgtgagttaacatgcgctagtgtattttttaacctaagttaagtcatgtagtgtgacttaa 47043893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 124 - 186
Target Start/End: Original strand, 8932529 - 8932589
Alignment:
Q  124 agttaagtcacgcagcgtgacttaactcacgcacctagtagagctcagcgtgacttaagtcac 186  Q
    ||||||||||| ||| ||||||||||||||||||||  || ||||| ||||||||||||||||    
T  8932529 agttaagtcacacagtgtgacttaactcacgcacct--tatagctctgcgtgacttaagtcac 8932589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 124 - 259
Target Start/End: Complemental strand, 9243051 - 9242917
Alignment:
Q  124 agttaagtcacgcagcgtgacttaactcacgcacctagtagagctcagcgtgacttaagtcacgcaccactgacatgtgcgtgagttaatccacgcaggt 223  Q
    ||||||||||| |  ||||||||||||||| |||||  || | ||| ||||||||||||||||||||||||||    | || |||||||  |||||| ||    
T  9243051 agttaagtcacactacgtgacttaactcacacaccttata-atctctgcgtgacttaagtcacgcaccactgagccttccgcgagttaactcacgcaagt 9242953  T
Q  224 tggccggtggtctgagcacaagaacacacgtttttt 259  Q
    |||||||| ||| || |  ||||||| |||||||||    
T  9242952 tggccggtagtcagaactgaagaacaaacgtttttt 9242917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 124 - 295
Target Start/End: Complemental strand, 21713297 - 21713127
Alignment:
Q  124 agttaagtcacgcagcgtgacttaactcacgcacctagtagagctcagcgtgacttaagtcacgcaccactgacatgtgcgtgagttaatccacgcaggt 223  Q
    |||||||||||||||||||| ||||||  |||||||  || | ||  ||||| |||||||||||||||| || | | |||  |||||||  ||||||       
T  21713297 agttaagtcacgcagcgtgatttaactagcgcaccttata-atctatgcgtggcttaagtcacgcaccaatggcctatgcacgagttaactcacgcaaca 21713199  T
Q  224 tggccggtggtctgagcacaagaacacacgttttttggacggtgatcaggttttcaaccttgattctacacg 295  Q
    |||||||||||| ||||  ||||||| ||||||||||| |  ||||||| ||| |||| || |||| |||||    
T  21713198 tggccggtggtcagagctgaagaacaaacgttttttggtccttgatcagttttccaacattcattccacacg 21713127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 102 - 148
Target Start/End: Complemental strand, 42099509 - 42099462
Alignment:
Q  102 gcgctagtgtatttttta-cctaagttaagtcacgcagcgtgacttaa 148  Q
    |||||||||||||||||| |||||||||||||||| ||||||||||||    
T  42099509 gcgctagtgtattttttaacctaagttaagtcacgtagcgtgacttaa 42099462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 178 - 295
Target Start/End: Original strand, 32935692 - 32935809
Alignment:
Q  178 ttaagtcacgcaccactgacatgtgcgtgagttaatccacgcaggttggccggtggtctgagcacaagaacacacgttttttggacggtgatcaggtttt 277  Q
    |||||||||||||||||  | | |||| |||||||  |||||| |||||||||||| | ||||  ||||||| ||||||||||| |  || |||| ||||    
T  32935692 ttaagtcacgcaccacttgcctatgcgcgagttaactcacgcacgttggccggtggccagagctgaagaacaaacgttttttggtctttggtcagttttt 32935791  T
Q  278 caaccttgattctacacg 295  Q
    |||| || | ||||||||    
T  32935792 caacattcaatctacacg 32935809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 69 - 114
Target Start/End: Original strand, 33161723 - 33161768
Alignment:
Q  69 acctatgttaagttacgctatgtgacataacaagcgctagtgtatt 114  Q
    ||||||||||||| |||||||||||| ||||| |||||||||||||    
T  33161723 acctatgttaagtcacgctatgtgacttaacatgcgctagtgtatt 33161768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 124 - 156
Target Start/End: Complemental strand, 42118955 - 42118923
Alignment:
Q  124 agttaagtcacgcagcgtgacttaactcacgca 156  Q
    |||||||||||||||||||||||||||||||||    
T  42118955 agttaagtcacgcagcgtgacttaactcacgca 42118923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 237 - 284
Target Start/End: Complemental strand, 18414196 - 18414149
Alignment:
Q  237 gagcacaagaacacacgttttttggacggtgatcaggttttcaacctt 284  Q
    |||| |||||||||| ||||||||||||||| |||| |||||||||||    
T  18414196 gagctcaagaacacatgttttttggacggtggtcagcttttcaacctt 18414149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 307 - 350
Target Start/End: Complemental strand, 49261711 - 49261668
Alignment:
Q  307 catttattgtagttataacatatgttaccatttccacctataaa 350  Q
    ||||||||||||| |||||||||||||| ||| |||||||||||    
T  49261711 catttattgtagtcataacatatgttactattcccacctataaa 49261668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 124 - 159
Target Start/End: Complemental strand, 52032815 - 52032780
Alignment:
Q  124 agttaagtcacgcagcgtgacttaactcacgcacct 159  Q
    ||||||||||||||||| ||||||||||||||||||    
T  52032815 agttaagtcacgcagcgagacttaactcacgcacct 52032780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 113 - 147
Target Start/End: Original strand, 12572506 - 12572540
Alignment:
Q  113 ttttttacctaagttaagtcacgcagcgtgactta 147  Q
    ||||||||||||||||||||||| |||||||||||    
T  12572506 ttttttacctaagttaagtcacgtagcgtgactta 12572540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 124 - 157
Target Start/End: Complemental strand, 9958235 - 9958202
Alignment:
Q  124 agttaagtcacgcagcgtgacttaactcacgcac 157  Q
    ||||||||||||||||||||||||||| ||||||    
T  9958235 agttaagtcacgcagcgtgacttaactaacgcac 9958202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 124 - 153
Target Start/End: Original strand, 13856167 - 13856196
Alignment:
Q  124 agttaagtcacgcagcgtgacttaactcac 153  Q
    ||||||||||||||||||||||||||||||    
T  13856167 agttaagtcacgcagcgtgacttaactcac 13856196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 170 - 262
Target Start/End: Complemental strand, 16525168 - 16525075
Alignment:
Q  170 agcgtgacttaagtcacgcaccactgacatgtgcgtgagttaatccacgcaggttggccggt-ggtctgagcacaagaacacacgttttttgga 262  Q
    |||||| ||||| |||||||||| || |||| | | |||||||  ||||||||||| | ||| |||| |||| ||| |||||||||||||||||    
T  16525168 agcgtggcttaactcacgcaccattggcatgggtgcgagttaactcacgcaggttgacgggttggtcagagctcaaaaacacacgttttttgga 16525075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 149
Target Start/End: Original strand, 28796690 - 28796743
Alignment:
Q  96 taacaagcgctagtgtattttttacctaagttaagtcacgcagcgtgacttaac 149  Q
    ||||| |||||||||||||||||| ||| ||||||||||||  | |||||||||    
T  28796690 taacacgcgctagtgtattttttatctatgttaagtcacgctacatgacttaac 28796743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 149
Target Start/End: Original strand, 33161700 - 33161753
Alignment:
Q  96 taacaagcgctagtgtattttttacctaagttaagtcacgcagcgtgacttaac 149  Q
    ||||| || ||||||||||||||||||| ||||||||||||   ||||||||||    
T  33161700 taacatgcactagtgtattttttacctatgttaagtcacgctatgtgacttaac 33161753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 103 - 189
Target Start/End: Original strand, 47177989 - 47178073
Alignment:
Q  103 cgctagtgtattttttacctaagttaagtcacgcagcgtgacttaactcacgcacctagt-agagctcagcgtgacttaagtcacgca 189  Q
    |||| |||||| |||||| || ||||||||| || |||||||||||||||||   |||||   |||||||||||||||||||| ||||    
T  47177989 cgcttgtgtatattttacgtatgttaagtcatgctgcgtgacttaactcacg---ctagtgttagctcagcgtgacttaagtcgcgca 47178073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 122 - 150
Target Start/End: Complemental strand, 26973402 - 26973374
Alignment:
Q  122 taagttaagtcacgcagcgtgacttaact 150  Q
    |||||||||||||||||||||||||||||    
T  26973402 taagttaagtcacgcagcgtgacttaact 26973374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 124 - 196
Target Start/End: Complemental strand, 34939491 - 34939420
Alignment:
Q  124 agttaagtcacgcagcgtgacttaactcacgcacctagtagagctcagcgtgacttaagtcacgcaccactga 196  Q
    |||||||||||| ||||||||||||| |||||||||   | ||||| || ||||||| |||||||| ||||||    
T  34939491 agttaagtcacgtagcgtgacttaacacacgcacctcaca-agctctgcatgacttatgtcacgcaacactga 34939420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 124 - 156
Target Start/End: Original strand, 37694618 - 37694650
Alignment:
Q  124 agttaagtcacgcagcgtgacttaactcacgca 156  Q
    ||||||||||||| |||||||||||||||||||    
T  37694618 agttaagtcacgctgcgtgacttaactcacgca 37694650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 100; Significance: 3e-49; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 124 - 295
Target Start/End: Complemental strand, 43835458 - 43835287
Alignment:
Q  124 agttaagtcacgcagcgtgacttaactcacgcacctagtagagctcagcgtgacttaagtcacgcaccactgacatgtgcgtgagttaatccacgcaggt 223  Q
    ||||||||||||||||  |||||||||||| |||||| |||||||||||||||||||||||||||||||| |   |||||| |||||||| || | ||||    
T  43835458 agttaagtcacgcagcaggacttaactcacacacctaatagagctcagcgtgacttaagtcacgcaccaccggtctgtgcgcgagttaattcatgtaggt 43835359  T
Q  224 tggccggtggtctgagcacaagaacacacgttttttggacggtgatcaggttttcaaccttgattctacacg 295  Q
    ||| |||| | |||||| |||||||||||||||||||||||||| | |||||||||||||||||||||||||    
T  43835358 tggtcggtagcctgagctcaagaacacacgttttttggacggtggttaggttttcaaccttgattctacacg 43835287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 123 - 284
Target Start/End: Complemental strand, 34471725 - 34471566
Alignment:
Q  123 aagttaagtcacgcagcgtgacttaactcacgcacctagtagagctcagcgtgacttaagtcacgcaccactgacatgtgcgtgagttaatccacgcagg 222  Q
    |||||||||||||| |||||||||||||  |||||||  || | ||  |||||||||||||||||||||| || | | |||| |||||||  |||||| |    
T  34471725 aagttaagtcacgctgcgtgacttaacttgcgcaccttataaa-ctatgcgtgacttaagtcacgcaccattggc-tatgcgcgagttaactcacgcacg 34471628  T
Q  223 ttggccggtggtctgagcacaagaacacacgttttttggacggtgatcaggttttcaacctt 284  Q
    ||||||||||||  || |  ||||||| ||||||||||||||||| ||||||||||||||||    
T  34471627 ttggccggtggttagaactgaagaacaaacgttttttggacggtggtcaggttttcaacctt 34471566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 124 - 258
Target Start/End: Original strand, 1931343 - 1931478
Alignment:
Q  124 agttaagtcacgcagcgtgacttaactcacgcacctagtagagctcagcgtgacttaagtcacgcaccactgacatgtgcgtgagttaatccacgcaggt 223  Q
    |||||||||||||   ||||||||||||||||||||| ||||| |||| ||| |||||| |||||||||||| |||   || | |||||  |||||||||    
T  1931343 agttaagtcacgctatgtgacttaactcacgcacctaatagagttcagtgtggcttaaggcacgcaccactggcatagacgcgggttaactcacgcaggt 1931442  T
Q  224 tggcc-ggtggtctgagcacaagaacacacgttttt 258  Q
    || || | |||||||||| ||| |||||||||||||    
T  1931443 tgtccagctggtctgagctcaaaaacacacgttttt 1931478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 124 - 196
Target Start/End: Complemental strand, 15743321 - 15743250
Alignment:
Q  124 agttaagtcacgcagcgtgacttaactcacgcacctagtagagctcagcgtgacttaagtcacgcaccactga 196  Q
    ||||||||||||||||  ||||||||||||||||||   | ||||| ||||||||||||||||||||||||||    
T  15743321 agttaagtcacgcagcaagacttaactcacgcacctcaca-agctctgcgtgacttaagtcacgcaccactga 15743250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 72 - 150
Target Start/End: Original strand, 43635226 - 43635305
Alignment:
Q  72 tatgttaagttacgctatgtgacataacaagcgctagtgta-ttttttacctaagttaagtcacgcagcgtgacttaact 150  Q
    ||||||||||||||||  ||||| ||||| ||||||||||| ||||||||||||||||| || || ||| ||||||||||    
T  43635226 tatgttaagttacgcttcgtgacttaacatgcgctagtgtatttttttacctaagttaattcgcgtagcatgacttaact 43635305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 122 - 196
Target Start/End: Complemental strand, 4759342 - 4759269
Alignment:
Q  122 taagttaagtcacgcagcgtgacttaactcacgcacctagtagagctcagcgtgacttaagtcacgcaccactga 196  Q
    |||||||||||||||| ||||||||||| |||||||||   | ||||| ||||||||||||||| ||||||||||    
T  4759342 taagttaagtcacgcaacgtgacttaacacacgcacctcaca-agctctgcgtgacttaagtcatgcaccactga 4759269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 171 - 262
Target Start/End: Original strand, 3964010 - 3964100
Alignment:
Q  171 gcgtgacttaagtcacgcaccactgacatgtgcgtgagttaatccacgcaggttggccggtggtctgagcacaagaacacacgttttttgga 262  Q
    |||||| |||||||||||| ||||| | ||| || |||||||  |||||| |||||||||||||  |||| |||||||||| ||||||||||    
T  3964010 gcgtgaattaagtcacgcatcactgtc-tgtccgcgagttaactcacgcaagttggccggtggttagagctcaagaacacatgttttttgga 3964100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 124 - 192
Target Start/End: Complemental strand, 5913248 - 5913181
Alignment:
Q  124 agttaagtcacgcagcgtgacttaactcacgcacctagtagagctcagcgtgacttaagtcacgcacca 192  Q
    ||||||||||| | ||||||||||||||||||||||   | ||||| |||||||||||||||| |||||    
T  5913248 agttaagtcacaccgcgtgacttaactcacgcacctcaca-agctctgcgtgacttaagtcacacacca 5913181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 307 - 350
Target Start/End: Complemental strand, 43835253 - 43835210
Alignment:
Q  307 catttattgtagttataacatatgttaccatttccacctataaa 350  Q
    ||||||||||||||| ||||||||||||||||  ||||||||||    
T  43835253 catttattgtagttaaaacatatgttaccattctcacctataaa 43835210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 149
Target Start/End: Complemental strand, 4640803 - 4640750
Alignment:
Q  96 taacaagcgctagtgtattttttacctaagttaagtcacgcagcgtgacttaac 149  Q
    ||||| ||||||||||||||||||| || |||||| |||||  |||||||||||    
T  4640803 taacatgcgctagtgtattttttacatatgttaagccacgcttcgtgacttaac 4640750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 90 - 150
Target Start/End: Original strand, 28703956 - 28704017
Alignment:
Q  90 gtgacataacaagcgctagtgtatttt-ttacctaagttaagtcacgcagcgtgacttaact 150  Q
    ||||| ||||| ||| || |||||||| ||||||||||||||||||| ||||||| ||||||    
T  28703956 gtgacttaacatgcgttaatgtattttcttacctaagttaagtcacgtagcgtgatttaact 28704017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 124 - 156
Target Start/End: Complemental strand, 42182641 - 42182609
Alignment:
Q  124 agttaagtcacgcagcgtgacttaactcacgca 156  Q
    ||||||||||||||| |||||||||||||||||    
T  42182641 agttaagtcacgcagtgtgacttaactcacgca 42182609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 81; Significance: 6e-38; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 17 - 150
Target Start/End: Complemental strand, 31826261 - 31826128
Alignment:
Q  17 atatggatacaaatcacaatcgatatttaaacatgtgctagtgtgnnnnnnnacctatgttaagttacgctatgtgacataacaagcgctagtgtatttt 116  Q
    ||||||||||||||||||||||||||||||||| |   |||||||       ||||||||||||| |||||| |||||||||||||||||||||||||||    
T  31826261 atatggatacaaatcacaatcgatatttaaacacgcattagtgtgtttttttacctatgttaagtcacgctacgtgacataacaagcgctagtgtatttt 31826162  T
Q  117 ttacctaagttaagtcacgcagcgtgacttaact 150  Q
    ||| ||||||||||||||| ||||||||||||||    
T  31826161 ttatctaagttaagtcacgtagcgtgacttaact 31826128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 140 - 291
Target Start/End: Complemental strand, 35126353 - 35126202
Alignment:
Q  140 gtgacttaactcacgcacctagtagagctcagcgtgacttaagtcacgcaccactgacatgtgcgtgagttaatccacgcaggttggccggtggtctgag 239  Q
    ||||||||||||||||| ||  ||||||||||| || |||||||||||||| ||||   |||||| |||||||  |||| || |||||| ||||||||||    
T  35126353 gtgacttaactcacgcatctgatagagctcagcatggcttaagtcacgcacaactggtctgtgcgcgagttaactcacgtagattggccagtggtctgag 35126254  T
Q  240 cacaagaacacacgttttttggacggtgatcaggttttcaaccttgattcta 291  Q
    | |||||| |||| |||||||||||||| | |||||||||||||||||||||    
T  35126253 ctcaagaatacacattttttggacggtggttaggttttcaaccttgattcta 35126202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 124 - 231
Target Start/End: Original strand, 29714254 - 29714359
Alignment:
Q  124 agttaagtcacgcagcgtgacttaactcacgcacctagtagagctcagcgtgacttaagtcacgcaccactgacatgtgcgtgagttaatccacgcaggt 223  Q
    ||||||||||||| ||||||||||| ||||||||||  || ||||| ||||||||||||||| ||||||||||| || ||| |||||||  |||||||||    
T  29714254 agttaagtcacgctgcgtgacttaaatcacgcacct--tatagctctgcgtgacttaagtcatgcaccactgacttgggcgcgagttaactcacgcaggt 29714351  T
Q  224 tggccggt 231  Q
    ||||||||    
T  29714352 tggccggt 29714359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 171 - 261
Target Start/End: Original strand, 21153755 - 21153845
Alignment:
Q  171 gcgtgacttaagtcacgcaccactgacatgtgcgtgagttaatccacgcaggttggccggtggtctgagcacaagaacacacgttttttgg 261  Q
    |||||| |||||||||||||||||| ||||||||||||||||  |||||| || ||||||||||| ||||  ||||||| |||||||||||    
T  21153755 gcgtgagttaagtcacgcaccactggcatgtgcgtgagttaactcacgcacgtcggccggtggtcggagctgaagaacagacgttttttgg 21153845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 124 - 235
Target Start/End: Original strand, 8260834 - 8260945
Alignment:
Q  124 agttaagtcacgcagcgtgacttaactcacgcacctagtagagctcagcgtgacttaagtcacgcaccactga-catgtgcgtgagttaatccacgcagg 222  Q
    ||||||||||||| ||||||||||||||| ||||||  || | ||| |||||||||||||||||||||||||| | | |||| |||||||  |||||| |    
T  8260834 agttaagtcacgctgcgtgacttaactcatgcaccttata-atctctgcgtgacttaagtcacgcaccactgagcctttgcgcgagttaactcacgcaag 8260932  T
Q  223 ttggccggtggtc 235  Q
    |||||||||||||    
T  8260933 ttggccggtggtc 8260945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 124 - 196
Target Start/End: Original strand, 39283944 - 39284015
Alignment:
Q  124 agttaagtcacgcagcgtgacttaactcacgcacctagtagagctcagcgtgacttaagtcacgcaccactga 196  Q
    ||||||||||||||||||| ||||||||||||||||  || ||||| ||||||||||||||||||||||||||    
T  39283944 agttaagtcacgcagcgtggcttaactcacgcacctcata-agctctgcgtgacttaagtcacgcaccactga 39284015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 171 - 284
Target Start/End: Complemental strand, 41219461 - 41219348
Alignment:
Q  171 gcgtgacttaagtcacgcaccactgacatgtgcgtgagttaatccacgcaggttggccggtggtctgagcacaagaacacacgttttttggacggtgatc 270  Q
    ||||||||||||||||||| ||||| | | |||| |||||||  |||||| |||||| ||||||| || |  ||||||| |||||||||| | |||| ||    
T  41219461 gcgtgacttaagtcacgcatcactggcctatgcgcgagttaactcacgcacgttggctggtggtcagaactgaagaacaaacgttttttgtatggtggtc 41219362  T
Q  271 aggttttcaacctt 284  Q
    ||||||||||||||    
T  41219361 aggttttcaacctt 41219348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 90 - 150
Target Start/End: Original strand, 38790966 - 38791026
Alignment:
Q  90 gtgacataacaagcgctagtgtattttttacctaagttaagtcacgcagcgtgacttaact 150  Q
    ||||| ||||| ||||||||||||||| |||||||||||||||||| ||||||||||||||    
T  38790966 gtgacttaacatgcgctagtgtattttgtacctaagttaagtcacgtagcgtgacttaact 38791026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 123 - 235
Target Start/End: Complemental strand, 27874158 - 27874047
Alignment:
Q  123 aagttaagtcacgcagcgtgacttaactcacgcacctagtagagctcagcgtgacttaagtcacgcaccactgacatgtgcgtgagttaatccacgcagg 222  Q
    |||||||||||||| ||||| |||||||  ||||||   || | ||| |||||||||||| |||||||||||||| | |||| |||||||  |||||| |    
T  27874158 aagttaagtcacgctgcgtggcttaacttgcgcaccatata-acctctgcgtgacttaagccacgcaccactgacctatgcgcgagttaactcacgcacg 27874060  T
Q  223 ttggccggtggtc 235  Q
    |||||||||||||    
T  27874059 ttggccggtggtc 27874047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 173 - 284
Target Start/End: Complemental strand, 18239491 - 18239380
Alignment:
Q  173 gtgacttaagtcacgcaccactgacatgtgcgtgagttaatccacgcaggttggccggtggtctgagcacaagaacacacgttttttggacggtgatcag 272  Q
    ||||||||||||||||| || || | | |||| |||||||   ||||| ||||| |||||||| || |  ||||||| |||||||||| |||||| ||||    
T  18239491 gtgacttaagtcacgcatcaatggcctatgcgcgagttaactaacgcacgttggtcggtggtcagaactgaagaacaaacgttttttgaacggtggtcag 18239392  T
Q  273 gttttcaacctt 284  Q
    ||||||||||||    
T  18239391 gttttcaacctt 18239380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 124 - 261
Target Start/End: Original strand, 39476483 - 39476619
Alignment:
Q  124 agttaagtcacgcagcgtgacttaactcacgcacctagtagagctcagcgtgacttaagtcacgcaccactgacatgtgcgtgagttaatccacgcaggt 223  Q
    |||||||||| ||||||||||||||||  |||||||  || | ||  |||||||||||||||||||||| |  | | |||| |||||||  ||||||       
T  39476483 agttaagtcatgcagcgtgacttaactagcgcaccttata-atctatgcgtgacttaagtcacgcaccattagcctatgcgcgagttaactcacgcacca 39476581  T
Q  224 tggccggtggtctgagcacaagaacacacgttttttgg 261  Q
    |||||||||||| ||||  ||||||| |||||||||||    
T  39476582 tggccggtggtcagagctgaagaacaaacgttttttgg 39476619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 124 - 159
Target Start/End: Original strand, 33802929 - 33802964
Alignment:
Q  124 agttaagtcacgcagcgtgacttaactcacgcacct 159  Q
    ||||||||||||||||||||||||||||||||||||    
T  33802929 agttaagtcacgcagcgtgacttaactcacgcacct 33802964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 165 - 235
Target Start/End: Complemental strand, 37524249 - 37524179
Alignment:
Q  165 agctcagcgtgacttaagtcacgcaccactgacatgtgcgtgagttaatccacgcaggttggccggtggtc 235  Q
    ||||| ||||||||||||||||||||||||| | |||||| ||||||   |||||| |||||| |||||||    
T  37524249 agctctgcgtgacttaagtcacgcaccactggcctgtgcgcgagttacctcacgcacgttggctggtggtc 37524179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 96 - 149
Target Start/End: Complemental strand, 1537254 - 1537201
Alignment:
Q  96 taacaagcgctagtgtattttttacctaagttaagtcacgcagcgtgacttaac 149  Q
    ||||| |||||||||||||||||||||| ||||||||||||  ||| |||||||    
T  1537254 taacatgcgctagtgtattttttacctatgttaagtcacgctacgttacttaac 1537201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 104 - 148
Target Start/End: Original strand, 46302336 - 46302381
Alignment:
Q  104 gctagtgtatttttta-cctaagttaagtcacgcagcgtgacttaa 148  Q
    |||||||||||||||| |||||||||||||||| ||||||||||||    
T  46302336 gctagtgtattttttaacctaagttaagtcacgtagcgtgacttaa 46302381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 90 - 150
Target Start/End: Original strand, 48211894 - 48211955
Alignment:
Q  90 gtgacataacaagcgctagtgtatttt-ttacctaagttaagtcacgcagcgtgacttaact 150  Q
    ||||| ||||| ||||||||||||||| ||||||||||||||||||| ||  ||||||||||    
T  48211894 gtgacttaacatgcgctagtgtattttcttacctaagttaagtcacgtagtatgacttaact 48211955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 148
Target Start/End: Complemental strand, 1537231 - 1537151
Alignment:
Q  69 acctatgttaagttacgctatgtgacataacaagcgctagtgtatttttt-acctaagttaagtcacgcagcgtgacttaa 148  Q
    ||||||||||||| |||||| || || |||||  |||| ||||||||||| ||| ||||||||||||  ||||||||||||    
T  1537231 acctatgttaagtcacgctacgttacttaacatacgctggtgtattttttgaccaaagttaagtcacatagcgtgacttaa 1537151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 124 - 156
Target Start/End: Complemental strand, 8260860 - 8260828
Alignment:
Q  124 agttaagtcacgcagcgtgacttaactcacgca 156  Q
    |||||||||||||||||||||||||||||||||    
T  8260860 agttaagtcacgcagcgtgacttaactcacgca 8260828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 178 - 258
Target Start/End: Original strand, 21613032 - 21613112
Alignment:
Q  178 ttaagtcacgcaccactgacatgtgcgtgagttaatccacgcaggttggccggtggtctgagcacaagaacacacgttttt 258  Q
    ||||||||||||||| || |||||||| |||||||  ||||||| ||| ||||||||| || |  |||||| |||||||||    
T  21613032 ttaagtcacgcaccattggcatgtgcgcgagttaactcacgcagcttgaccggtggtcagaactgaagaactcacgttttt 21613112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 166 - 196
Target Start/End: Complemental strand, 40144874 - 40144844
Alignment:
Q  166 gctcagcgtgacttaagtcacgcaccactga 196  Q
    |||||||||||||||||||||||||||||||    
T  40144874 gctcagcgtgacttaagtcacgcaccactga 40144844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 124 - 184
Target Start/End: Complemental strand, 2914777 - 2914719
Alignment:
Q  124 agttaagtcacgcagcgtgacttaactcacgcacctagtagagctcagcgtgacttaagtc 184  Q
    |||||||||||||| | |||||||||||||||||||  || ||||  ||||||||||||||    
T  2914777 agttaagtcacgcaacatgacttaactcacgcacct--tatagctttgcgtgacttaagtc 2914719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 69 - 114
Target Start/End: Complemental strand, 26502364 - 26502319
Alignment:
Q  69 acctatgttaagttacgctatgtgacataacaagcgctagtgtatt 114  Q
    |||||||||||||||||||| ||||| ||||  |||||||||||||    
T  26502364 acctatgttaagttacgctacgtgacttaacttgcgctagtgtatt 26502319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 72 - 150
Target Start/End: Complemental strand, 26502413 - 26502333
Alignment:
Q  72 tatgttaagttacgctatgtgacataacaagcgctagtgtatt--ttttacctaagttaagtcacgcagcgtgacttaact 150  Q
    |||||||||| |||||| ||| | ||||| |||| ||||||||  ||||||||| ||||||| ||||  ||||||||||||    
T  26502413 tatgttaagtcacgctacgtggcttaacatgcgccagtgtattttttttacctatgttaagttacgctacgtgacttaact 26502333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 72 - 150
Target Start/End: Original strand, 26590301 - 26590381
Alignment:
Q  72 tatgttaagttacgctatgtgacataacaagcgctagtgta--ttttttacctaagttaagtcacgcagcgtgacttaact 150  Q
    |||||||||| |||||| ||| | ||||| |||| ||||||  ||||||||||| ||||||| ||||  ||||||||||||    
T  26590301 tatgttaagtcacgctacgtggcttaacatgcgccagtgtattttttttacctatgttaagttacgctacgtgacttaact 26590381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 69 - 114
Target Start/End: Original strand, 26590350 - 26590395
Alignment:
Q  69 acctatgttaagttacgctatgtgacataacaagcgctagtgtatt 114  Q
    |||||||||||||||||||| ||||| ||||  |||||||||||||    
T  26590350 acctatgttaagttacgctacgtgacttaacttgcgctagtgtatt 26590395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 124 - 152
Target Start/End: Complemental strand, 2912243 - 2912215
Alignment:
Q  124 agttaagtcacgcagcgtgacttaactca 152  Q
    |||||||||||||||||||||||||||||    
T  2912243 agttaagtcacgcagcgtgacttaactca 2912215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 124 - 156
Target Start/End: Original strand, 31267984 - 31268016
Alignment:
Q  124 agttaagtcacgcagcgtgacttaactcacgca 156  Q
    |||||||||||||||||||| ||||||||||||    
T  31267984 agttaagtcacgcagcgtgagttaactcacgca 31268016  T

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Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 124 - 156
Target Start/End: Complemental strand, 33802955 - 33802923
Alignment:
Q  124 agttaagtcacgcagcgtgacttaactcacgca 156  Q
    ||||||||||||| |||||||||||||||||||    
T  33802955 agttaagtcacgctgcgtgacttaactcacgca 33802923  T

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Target: chr3 (Bit Score: 80; Significance: 2e-37; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 124 - 294
Target Start/End: Original strand, 50561399 - 50561567
Alignment:
Q  124 agttaagtcacgcagcgtgacttaactcacgcacctagtagagctcagcgtgacttaagtcacgcaccactgacatgtgcgtgagttaatccacgcaggt 223  Q
    ||||||||||||  | ||||||||||||||| ||||| |||  |||||| |||||||||||| ||||||||  | |||||| |||||||  ||||| |||    
T  50561399 agttaagtcacgttgtgtgacttaactcacgtacctaatag--ctcagcatgacttaagtcatgcaccacttgcctgtgcgcgagttaactcacgcgggt 50561496  T
Q  224 tggccggtggtctgagcacaagaacacacgttttttggacggtgatcaggttttcaaccttgattctacac 294  Q
    ||| ||||||||||||| |||||| |||| |||||||||||||| |||| |||||||||||||||||||||    
T  50561497 tggtcggtggtctgagctcaagaatacacattttttggacggtggtcagtttttcaaccttgattctacac 50561567  T

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Target: chr3; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 124 - 263
Target Start/End: Complemental strand, 6755847 - 6755709
Alignment:
Q  124 agttaagtcacgcagcgtgacttaactcacgcacctagtagagctcagcgtgacttaagtcacgcaccactgacatgtgcgtgagttaatccacgcaggt 223  Q
    ||||||||||||| ||||||||||||||||||||||  || ||||  | |||||||||||||| |||||||| |||||||| |||||||  |||||| ||    
T  6755847 agttaagtcacgctgcgtgacttaactcacgcaccttata-agctttgtgtgacttaagtcacacaccactggcatgtgcgcgagttaactcacgcaagt 6755749  T
Q  224 tggccggtggtctgagcacaagaacacacgttttttggac 263  Q
    |||||||||||  |||| ||||||||||||||||||||||    
T  6755748 tggccggtggttagagctcaagaacacacgttttttggac 6755709  T

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Target: chr3; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 126 - 284
Target Start/End: Original strand, 39415302 - 39415459
Alignment:
Q  126 ttaagtcacgcagcgtgacttaactcacgcacctagtagagctcagcgtgacttaagtcacgcaccactgacatgtgcgtgagttaatccacgcaggttg 225  Q
    ||||||||||| |||||||||||||  |||||||  || | ||| ||||||||||||||||||||||||| | ||||||||||||||  |||||| ||||    
T  39415302 ttaagtcacgctgcgtgacttaacttgcgcaccttata-acctctgcgtgacttaagtcacgcaccactggcctgtgcgtgagttaactcacgcacgttg 39415400  T
Q  226 gccggtggtctgagcacaagaacacacgttttttggacggtgatcaggttttcaacctt 284  Q
    |||| ||||  || |  ||||||| ||||||||||||||||| ||||||||||||||||    
T  39415401 gccgatggttagaactgaagaacaaacgttttttggacggtggtcaggttttcaacctt 39415459  T

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Target: chr3; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 124 - 295
Target Start/End: Complemental strand, 47560509 - 47560335
Alignment:
Q  124 agttaagtcacgcagcgtgacttaactcacgcacctagtagagctcagcgtgacttaagtcac----gcaccactgacatgtgcgtgagttaatccacgc 219  Q
    ||||||||||||| |||||||||||||||| |||||  || || || ||||||||||||||||    ||||||||||| || ||  || ||||  |||||    
T  47560509 agttaagtcacgccgcgtgacttaactcacacaccttata-agttctgcgtgacttaagtcactcacgcaccactgacttgggcacgatttaactcacgc 47560411  T
Q  220 aggttggccggtggtctgagcacaagaacacacgttttttggacggtgatcaggttttcaaccttgattctacacg 295  Q
    | ||||||||||||  ||||| || ||||| |||| ||||||||||||||||||||||||||||| | ||||||||    
T  47560410 acgttggccggtggcatgagctcacgaacaaacgtgttttggacggtgatcaggttttcaaccttcaatctacacg 47560335  T

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Target: chr3; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 123 - 284
Target Start/End: Original strand, 25574780 - 25574940
Alignment:
Q  123 aagttaagtcacgcagcgtgacttaactcacgcacctagtagagctcagcgtgacttaagtcacgcaccactgacatgtgcgtgagttaatccacgcagg 222  Q
    ||||||||||| || |||||||||||||   |||||| ||| | ||| | ||||||||||||||||||||||| | | |||| |||||||  |||||| |    
T  25574780 aagttaagtcatgccgcgtgacttaacttgtgcaccttgta-acctctgtgtgacttaagtcacgcaccactggcctatgcgcgagttaactcacgcacg 25574878  T
Q  223 ttggccggtggtctgagcacaagaacacacgttttttggacggtgatcaggttttcaacctt 284  Q
    |||| |||||||| || |  ||||||| ||||||||||||||||| ||||||||||||||||    
T  25574879 ttggtcggtggtcagaactgaagaacaaacgttttttggacggtggtcaggttttcaacctt 25574940  T

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Target: chr3; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 124 - 263
Target Start/End: Original strand, 6462950 - 6463088
Alignment:
Q  124 agttaagtcacgcagcgtgacttaactcacgcacctagtagagctcagcgtgacttaagtcacgcaccactgacatgtgcgtgagttaatccacgcaggt 223  Q
    ||||||||||||  ||||||||||||||||||||||  || ||||  | ||||||||||||||||||||||| |||||| |||||||||  |||||| ||    
T  6462950 agttaagtcacgttgcgtgacttaactcacgcaccttata-agctttgtgtgacttaagtcacgcaccactggcatgtgtgtgagttaactcacgcaagt 6463048  T
Q  224 tggccggtggtctgagcacaagaacacacgttttttggac 263  Q
    |||||||||||   ||| |||||||| | |||||||||||    
T  6463049 tggccggtggttaaagctcaagaacaaatgttttttggac 6463088  T

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Target: chr3; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 123 - 284
Target Start/End: Original strand, 48086796 - 48086956
Alignment:
Q  123 aagttaagtcacgcagcgtgacttaactcacgcacctagtagagctcagcgtgacttaagtcacgcaccactgacatgtgcgtgagttaatccacgcagg 222  Q
    |||||||||||| | |||||||||||||  |||||||  || | ||| || |||||||||||||||||||||| | | |||| |||||||  |||||| |    
T  48086796 aagttaagtcacactgcgtgacttaacttgcgcaccttata-acctctgcatgacttaagtcacgcaccactggcctatgcgcgagttaactcacgcacg 48086894  T
Q  223 ttggccggtggtctgagcacaagaacacacgttttttggacggtgatcaggttttcaacctt 284  Q
    ||||||||||||| || |  |  |||| ||||||||||||||||| ||||||||||||||||    
T  48086895 ttggccggtggtcagaactgactaacaaacgttttttggacggtggtcaggttttcaacctt 48086956  T

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Target: chr3; HSP #8
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 69 - 148
Target Start/End: Complemental strand, 16967966 - 16967884
Alignment:
Q  69 acctatgttaagttacgctatgtgacataacaagcgctagtgtatt---ttttacctaagttaagtcacgcagcgtgacttaa 148  Q
    ||||||||||||| |||||| ||||| ||||| |||||||||||||   ||||||||||||||||||||| ||||||||||||    
T  16967966 acctatgttaagtcacgctacgtgacttaacatgcgctagtgtatttttttttacctaagttaagtcacgtagcgtgacttaa 16967884  T

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Target: chr3; HSP #9
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 124 - 196
Target Start/End: Complemental strand, 49742231 - 49742160
Alignment:
Q  124 agttaagtcacgcagcgtgacttaactcacgcacctagtagagctcagcgtgacttaagtcacgcaccactga 196  Q
    ||||||||||||||||||||||||||||||||||||   | ||||| ||||||||||||||||||||||||||    
T  49742231 agttaagtcacgcagcgtgacttaactcacgcacctcaca-agctctgcgtgacttaagtcacgcaccactga 49742160  T

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Target: chr3; HSP #10
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 69 - 148
Target Start/End: Original strand, 53824383 - 53824465
Alignment:
Q  69 acctatgttaagttacgctatgtgacataacaagcgctagtgta---ttttttacctaagttaagtcacgcagcgtgacttaa 148  Q
    ||||||||||||| |||||| ||||| ||||| |||||||||||   ||||||||||||||||||||||| ||||||||||||    
T  53824383 acctatgttaagtcacgctacgtgacttaacatgcgctagtgtatttttttttacctaagttaagtcacgtagcgtgacttaa 53824465  T

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Target: chr3; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 69 - 149
Target Start/End: Original strand, 35485338 - 35485419
Alignment:
Q  69 acctatgttaagttacgctatgtgacataacaagcgctagtgta-ttttttacctaagttaagtcacgcagcgtgacttaac 149  Q
    ||||||||||||| ||| || ||||| ||||| ||||||||||| ||||||||||||||||||| ||| |||||||||||||    
T  35485338 acctatgttaagtcacgttacgtgacttaacatgcgctagtgtatttttttacctaagttaagttacgtagcgtgacttaac 35485419  T

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Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 124 - 212
Target Start/End: Complemental strand, 49501664 - 49501576
Alignment:
Q  124 agttaagtcacgcagcgtgacttaactcacgcacctagtagagctcagcgtgacttaagtcacgcaccactga-catgtgcgtgagttaa 212  Q
    ||||||||||| ||||| ||||||||||||||||||   | ||||| |||||||||||||||||||||||||| | | ||||||||||||    
T  49501664 agttaagtcacacagcgagacttaactcacgcacctcaca-agctctgcgtgacttaagtcacgcaccactgagcttatgcgtgagttaa 49501576  T

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Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 124 - 196
Target Start/End: Original strand, 23029602 - 23029673
Alignment:
Q  124 agttaagtcacgcagcgtgacttaactcacgcacctagtagagctcagcgtgacttaagtcacgcaccactga 196  Q
    ||||||||||||||||||||||||||||||||| ||  || ||||  ||||||||||||||| ||||||||||    
T  23029602 agttaagtcacgcagcgtgacttaactcacgcatctcata-agctttgcgtgacttaagtcatgcaccactga 23029673  T

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Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 129 - 263
Target Start/End: Complemental strand, 25745265 - 25745132
Alignment:
Q  129 agtcacgcagcgtgacttaactcacgcacctagtagagctcagcgtgacttaagtcacgcaccactgacatgtgcgtgagttaatccacgcaggttggcc 228  Q
    ||||||||||| ||||||||||||| |||||  || ||||| |||||||||||||||||| ||  || |   |||  |||||||  ||||||||||||||    
T  25745265 agtcacgcagcatgacttaactcacacacct--tatagctctgcgtgacttaagtcacgctcctttggccgctgcacgagttaactcacgcaggttggcc 25745168  T
Q  229 g-gtggtctgagcacaagaacacacgttttttggac 263  Q
    |  ||||| |||| |||||||||||| |||||||||    
T  25745167 gattggtcagagctcaagaacacacggtttttggac 25745132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 72 - 135
Target Start/End: Original strand, 42947472 - 42947535
Alignment:
Q  72 tatgttaagttacgctatgtgacataacaagcgctagtgtattttttacctaagttaagtcacg 135  Q
    |||||||||| ||||||  |||  ||||| ||||||||||||||||||||||||||||||||||    
T  42947472 tatgttaagtcacgctacctgatttaacatgcgctagtgtattttttacctaagttaagtcacg 42947535  T

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Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 96 - 149
Target Start/End: Original strand, 53824360 - 53824413
Alignment:
Q  96 taacaagcgctagtgtattttttacctaagttaagtcacgcagcgtgacttaac 149  Q
    ||||| ||||||||||| |||||||||| ||||||||||||  |||||||||||    
T  53824360 taacatgcgctagtgtaatttttacctatgttaagtcacgctacgtgacttaac 53824413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 124 - 156
Target Start/End: Original strand, 36182825 - 36182857
Alignment:
Q  124 agttaagtcacgcagcgtgacttaactcacgca 156  Q
    |||||||||||||||||||||||||||||||||    
T  36182825 agttaagtcacgcagcgtgacttaactcacgca 36182857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 124 - 156
Target Start/End: Original strand, 50561678 - 50561710
Alignment:
Q  124 agttaagtcacgcagcgtgacttaactcacgca 156  Q
    |||||||||||||||||||||||||||||||||    
T  50561678 agttaagtcacgcagcgtgacttaactcacgca 50561710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 124 - 184
Target Start/End: Complemental strand, 53401606 - 53401547
Alignment:
Q  124 agttaagtcacgcagcgtgacttaactcacgcacctagtagagctcagcgtgacttaagtc 184  Q
    |||||||| |||||||| ||||||||||||||||||  || ||||| ||||||||||||||    
T  53401606 agttaagttacgcagcgagacttaactcacgcacctcata-agctctgcgtgacttaagtc 53401547  T

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Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 223 - 331
Target Start/End: Original strand, 11161868 - 11161975
Alignment:
Q  223 ttggccggtggtctgagcacaagaacacacgttttttggacggtgatcaggttttcaaccttgattctacacgnnnnnnnactgcatttattgtagttat 322  Q
    ||||| |||||||||||||||  || ||||||||||| ||||||  |||| | ||||| ||||||| ||||||       |||||||||| |||||||||    
T  11161868 ttggctggtggtctgagcacataaa-acacgttttttagacggtagtcagttattcaaacttgattttacacgttttttgactgcatttagtgtagttat 11161966  T
Q  323 aacatatgt 331  Q
    ||| |||||    
T  11161967 aacctatgt 11161975  T

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Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 103 - 192
Target Start/End: Original strand, 33448576 - 33448663
Alignment:
Q  103 cgctagtgtattttttacctaagttaagtcacgcagcgtgacttaactcacgcacctagtagagctcagcgtgacttaagtcacgcacca 192  Q
    |||||||||||  ||||| |  ||||||||| ||||||| ||||||||||| ||| |  || |||||  |||||||||||||||||||||    
T  33448576 cgctagtgtatactttacgtgtgttaagtcaagcagcgtaacttaactcacacacgt--tatagctctacgtgacttaagtcacgcacca 33448663  T

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Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 96 - 149
Target Start/End: Complemental strand, 42387935 - 42387881
Alignment:
Q  96 taacaagcgctagtgtatttttt-acctaagttaagtcacgcagcgtgacttaac 149  Q
    ||||| ||||||||||||||||| ||||| ||||||||||||  |||||||||||    
T  42387935 taacatgcgctagtgtatttttttacctatgttaagtcacgctacgtgacttaac 42387881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 96 - 150
Target Start/End: Original strand, 42993636 - 42993690
Alignment:
Q  96 taacaagcgctagtgtattttttacctaagttaagtcacgcagcgtgacttaact 150  Q
    ||||| |||||||||||||||| ||||| || |||||||||  ||||||||||||    
T  42993636 taacatgcgctagtgtatttttaacctatgtaaagtcacgctacgtgacttaact 42993690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 123 - 156
Target Start/End: Original strand, 2182594 - 2182627
Alignment:
Q  123 aagttaagtcacgcagcgtgacttaactcacgca 156  Q
    |||||||||||||||||||||||||||| |||||    
T  2182594 aagttaagtcacgcagcgtgacttaacttacgca 2182627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 126 - 234
Target Start/End: Original strand, 41649903 - 41650011
Alignment:
Q  126 ttaagtcacgcagcgtgacttaactcacgcacctagtagagctcagcgtgacttaagtcacgcaccactga-catgtgcgtgagttaatccacgcaggtt 224  Q
    ||||||||||||||| || ||||||||| |||||   | ||||| | |||||||||||||||||| ||||| | | |||| ||||||||   |||| |||    
T  41649903 ttaagtcacgcagcgagatttaactcacacacctcaca-agctctgtgtgacttaagtcacgcactactgagcctatgcgcgagttaatttgcgcaagtt 41650001  T
Q  225 ggccggtggt 234  Q
    ||||||||||    
T  41650002 ggccggtggt 41650011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 69 - 114
Target Start/End: Complemental strand, 42387911 - 42387866
Alignment:
Q  69 acctatgttaagttacgctatgtgacataacaagcgctagtgtatt 114  Q
    ||||||||||||| |||||| ||||| ||||| |||||||||||||    
T  42387911 acctatgttaagtcacgctacgtgacttaacatgcgctagtgtatt 42387866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 124 - 156
Target Start/End: Complemental strand, 36182851 - 36182819
Alignment:
Q  124 agttaagtcacgcagcgtgacttaactcacgca 156  Q
    ||||||||||||| |||||||||||||||||||    
T  36182851 agttaagtcacgctgcgtgacttaactcacgca 36182819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 76; Significance: 5e-35; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 128 - 267
Target Start/End: Complemental strand, 23912378 - 23912240
Alignment:
Q  128 aagtcacgcagcgtgacttaactcacgcacctagtagagctcagcgtgacttaagtcacgcaccactgacatgtgcgtgagttaatccacgcaggttggc 227  Q
    ||||||||| | ||||||||||||||||||||  || ||||| ||||||||||||||| ||||||||| |||||||| |||||||| |||||| ||||||    
T  23912378 aagtcacgccgtgtgacttaactcacgcaccttata-agctctgcgtgacttaagtcatgcaccactggcatgtgcgcgagttaattcacgcaagttggc 23912280  T
Q  228 cggtggtctgagcacaagaacacacgttttttggacggtg 267  Q
    |||||||  |||| |||||| |||||||||||||||||||    
T  23912279 cggtggttagagctcaagaatacacgttttttggacggtg 23912240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 124 - 263
Target Start/End: Original strand, 13312541 - 13312679
Alignment:
Q  124 agttaagtcacgcagcgtgacttaactcacgcacctagtagagctcagcgtgacttaagtcacgcaccactgacatgtgcgtgagttaatccacgcaggt 223  Q
    ||||||||||||| ||||||||||||| ||||||||  || ||||| ||||||||||||||||| ||||||| | || ||  |||||||  |||| | ||    
T  13312541 agttaagtcacgctgcgtgacttaactaacgcaccttata-agctctgcgtgacttaagtcacgaaccactggcctgggcacgagttaactcacgtacgt 13312639  T
Q  224 tggccggtggtctgagcacaagaacacacgttttttggac 263  Q
    |||||| ||||| || |  ||||||| || ||||||||||    
T  13312640 tggccgatggtcagaactgaagaacaaacattttttggac 13312679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 69 - 150
Target Start/End: Original strand, 14830485 - 14830567
Alignment:
Q  69 acctatgttaagttacgctatgtgacataacaagcgctagtgtatttt-ttacctaagttaagtcacgcagcgtgacttaact 150  Q
    ||||||||||||| |||||| ||||| ||||| ||||||||||||||| ||||||||||||||  ||| ||||||| ||||||    
T  14830485 acctatgttaagtcacgctacgtgacttaacatgcgctagtgtattttcttacctaagttaagaaacgtagcgtgatttaact 14830567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 124 - 196
Target Start/End: Complemental strand, 30634247 - 30634176
Alignment:
Q  124 agttaagtcacgcagcgtgacttaactcacgcacctagtagagctcagcgtgacttaagtcacgcaccactga 196  Q
    ||||||||||||||||| ||||||||||||||||||   | |||||  |||||||||||||||||||||||||    
T  30634247 agttaagtcacgcagcgagacttaactcacgcacctcaca-agctctacgtgacttaagtcacgcaccactga 30634176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 173 - 284
Target Start/End: Original strand, 319227 - 319338
Alignment:
Q  173 gtgacttaagtcacgcaccactgacatgtgcgtgagttaatccacgcaggttggccggtggtctgagcacaagaacacacgttttttggacggtgatcag 272  Q
    ||||||||||||| |||||||||   | |||| |||||||  |||||| |||||  ||||||| || |  ||||||| |||||||||||| |||| ||||    
T  319227 gtgacttaagtcatgcaccactggtctatgcgcgagttaactcacgcacgttgggtggtggtcagaactgaagaacaaacgttttttggatggtggtcag 319326  T
Q  273 gttttcaacctt 284  Q
    ||||||||||||    
T  319327 gttttcaacctt 319338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 178 - 267
Target Start/End: Original strand, 17399041 - 17399131
Alignment:
Q  178 ttaagtcacgcaccactgacatgtgcgtgagttaatccacgcaggttggccggtggtctgagcacaagaacacacgttttt-tggacggtg 267  Q
    |||||||||||||||||| |||||| | |||||||  |||||| ||||||||||||||||    ||||||||||| ||||| |||||||||    
T  17399041 ttaagtcacgcaccactggcatgtgtgcgagttaactcacgcaagttggccggtggtctgtcatcaagaacacacatttttgtggacggtg 17399131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 96 - 149
Target Start/End: Original strand, 14830462 - 14830515
Alignment:
Q  96 taacaagcgctagtgtattttttacctaagttaagtcacgcagcgtgacttaac 149  Q
    ||||| |||||||||||||||||||||| ||||||||||||  |||||||||||    
T  14830462 taacatgcgctagtgtattttttacctatgttaagtcacgctacgtgacttaac 14830515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 69 - 148
Target Start/End: Original strand, 14153447 - 14153527
Alignment:
Q  69 acctatgttaagttacgctatgtgacataacaagcgctagtgtatttttt-acctaagttaagtcacgcagcgtgacttaa 148  Q
    ||||||||| |||  ||||| ||||| ||||| ||||||||||||||||| || |||| ||||||||| ||||||||||||    
T  14153447 acctatgtttagtcgcgctacgtgacttaacatgcgctagtgtattttttaacttaagctaagtcacgtagcgtgacttaa 14153527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 124 - 195
Target Start/End: Original strand, 1077587 - 1077656
Alignment:
Q  124 agttaagtcacgcagcgtgacttaactcacgcacctagtagagctcagcgtgacttaagtcacgcaccactg 195  Q
    |||||||||||||||||| |||||||||||||| ||  || || || |||||| |||||| |||||||||||    
T  1077587 agttaagtcacgcagcgtaacttaactcacgcagct--tatagttctgcgtgatttaagttacgcaccactg 1077656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 149
Target Start/End: Original strand, 14153424 - 14153477
Alignment:
Q  96 taacaagcgctagtgtattttttacctaagttaagtcacgcagcgtgacttaac 149  Q
    ||||| |||||||||||||||||||||| ||| |||| |||  |||||||||||    
T  14153424 taacatgcgctagtgtattttttacctatgtttagtcgcgctacgtgacttaac 14153477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 149
Target Start/End: Original strand, 16444339 - 16444392
Alignment:
Q  96 taacaagcgctagtgtattttttacctaagttaagtcacgcagcgtgacttaac 149  Q
    ||||| |||||||||||||||||||||| ||||||| ||||  | |||||||||    
T  16444339 taacatgcgctagtgtattttttacctatgttaagttacgctacatgacttaac 16444392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 165 - 201
Target Start/End: Original strand, 9521407 - 9521443
Alignment:
Q  165 agctcagcgtgacttaagtcacgcaccactgacatgt 201  Q
    ||||| ||||||||||||||||||||||||| |||||    
T  9521407 agctctgcgtgacttaagtcacgcaccactggcatgt 9521443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 124 - 156
Target Start/End: Complemental strand, 13312567 - 13312535
Alignment:
Q  124 agttaagtcacgcagcgtgacttaactcacgca 156  Q
    ||||||||||||||||||||||||||| |||||    
T  13312567 agttaagtcacgcagcgtgacttaactaacgca 13312535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 70; Significance: 2e-31; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 124 - 295
Target Start/End: Complemental strand, 11125916 - 11125746
Alignment:
Q  124 agttaagtcacgcagcgtgacttaactcacgcacctagtagagctcagcgtgacttaagtcacgcaccactgacatgtgcgtgagttaatccacgcaggt 223  Q
    |||||||||||||| |||||||||||||||||||||  || ||||| ||||||||||||||| ||| ||||| |||||||| |||||||  ||||| |||    
T  11125916 agttaagtcacgcaacgtgacttaactcacgcacct--tatagctctgcgtgacttaagtcatgcatcactggcatgtgcgcgagttaactcacgccggt 11125819  T
Q  224 tggcc-ggtggtctgagcacaagaacacacgttttttggacggtgatcaggttttcaaccttgattctacacg 295  Q
    ||||| | ||||| |||| ||| ||||||| ||||||||||  || |||| ||||||||||| | ||||||||    
T  11125818 tggccagttggtcagagctcaaaaacacacattttttggactttggtcagcttttcaaccttcaatctacacg 11125746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 170 - 295
Target Start/End: Original strand, 19043885 - 19044010
Alignment:
Q  170 agcgtgacttaagtcacgcaccactgacatgtgcgtgagttaatccacgcaggttggccggtggtctgagcacaagaacacacgttttttggacggtgat 269  Q
    ||||||||||||||||| ||||| |||| || ||| |||||||  || |||||||||| |||||||| ||| |||||||||  |||||||| |||||| |    
T  19043885 agcgtgacttaagtcacacaccattgacttgggcgcgagttaactcatgcaggttggctggtggtctaagctcaagaacacgtgttttttgaacggtggt 19043984  T
Q  270 caggttttcaaccttgattctacacg 295  Q
    ||| ||||||||||||||||||||||    
T  19043985 cagtttttcaaccttgattctacacg 19044010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 138 - 261
Target Start/End: Complemental strand, 20202726 - 20202605
Alignment:
Q  138 gcgtgacttaactcacgcacctagtagagctcagcgtgacttaagtcacgcaccactgacatgtgcgtgagttaatccacgcaggttggccggtggtctg 237  Q
    ||||||||||||||||||| ||  || ||||| ||||||||| |||||| |||||||| | || ||| |||||||  | |||||||||||| ||||||||    
T  20202726 gcgtgacttaactcacgcatct--tatagctctgcgtgacttgagtcacacaccactggcctgggcgcgagttaactcgcgcaggttggccagtggtctg 20202629  T
Q  238 agcacaagaacacacgttttttgg 261  Q
    ||| ||||||||||| ||||||||    
T  20202628 agctcaagaacacacattttttgg 20202605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 171 - 284
Target Start/End: Complemental strand, 41758798 - 41758685
Alignment:
Q  171 gcgtgacttaagtcacgcaccactgacatgtgcgtgagttaatccacgcaggttggccggtggtctgagcacaagaacacacgttttttggacggtgatc 270  Q
    ||||||||| |||||||||||| |||| | |||| |||||||  || ||| |||||| ||||||| || |  ||||||| ||||||||||||||||| ||    
T  41758798 gcgtgacttgagtcacgcaccattgacctatgcgcgagttaactcatgcacgttggctggtggtcagaactgaagaacaaacgttttttggacggtggtc 41758699  T
Q  271 aggttttcaacctt 284  Q
    ||||||||||||||    
T  41758698 aggttttcaacctt 41758685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 172 - 262
Target Start/End: Original strand, 2599801 - 2599891
Alignment:
Q  172 cgtgacttaagtcacgcaccactgacatgtgcgtgagttaatccacgcaggttggccggtggtctgagcacaagaacacacgttttttgga 262  Q
    ||||||||||||||||||||||| ||  ||||| | |||||  |||||||||| | ||||||||||| | |||||||||||||||||||||    
T  2599801 cgtgacttaagtcacgcaccactaaccggtgcgcgtgttaactcacgcaggtttgtcggtggtctgaactcaagaacacacgttttttgga 2599891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 75 - 149
Target Start/End: Original strand, 19401903 - 19401977
Alignment:
Q  75 gttaagttacgctatgtgacataacaagcgctagtgtattttttacctaagttaagtcacgcagcgtgacttaac 149  Q
    ||||||| |||||| ||||| ||||  ||||||||||||||| |||||||||||||||||| |||||||||||||    
T  19401903 gttaagtcacgctacgtgacttaacttgcgctagtgtattttgtacctaagttaagtcacgtagcgtgacttaac 19401977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 124 - 196
Target Start/End: Complemental strand, 1082020 - 1081949
Alignment:
Q  124 agttaagtcacgcagcgtgacttaactcacgcacctagtagagctcagcgtgacttaagtcacgcaccactga 196  Q
    ||||||||||||||||| ||||||||||||||||||   | ||||| ||||||||||||||||||||||||||    
T  1082020 agttaagtcacgcagcgagacttaactcacgcacctcaca-agctctgcgtgacttaagtcacgcaccactga 1081949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 171 - 295
Target Start/End: Original strand, 25898635 - 25898759
Alignment:
Q  171 gcgtgacttaagtcacgcaccactgacatgtgcgtgagttaatccacgcaggttggccggtggtctgagcacaagaacacacgttttttggacggtgatc 270  Q
    |||||| ||||||||  |||||||| | |  |||||||||||  |||||| |||||| |||||||||||  || ||||| ||| ||||||||||||| ||    
T  25898635 gcgtgatttaagtcatacaccactggcctaggcgtgagttaactcacgcacgttggctggtggtctgagttcatgaacaaacgatttttggacggtggtc 25898734  T
Q  271 aggttttcaaccttgattctacacg 295  Q
    ||||||| |||||| | ||||||||    
T  25898735 aggtttttaaccttcaatctacacg 25898759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 69 - 150
Target Start/End: Complemental strand, 3461569 - 3461486
Alignment:
Q  69 acctatgttaagttacgctatgtgacataacaagcgctagtgtatttttt--acctaagttaagtcacgcagcgtgacttaact 150  Q
    ||||||||||||| ||| || ||||| |||||  ||||| ||||||||||  ||||||||||||||||| ||||||||||||||    
T  3461569 acctatgttaagtcacgttacgtgacttaacatacgctaatgtattttttttacctaagttaagtcacgtagcgtgacttaact 3461486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 173 - 261
Target Start/End: Original strand, 10532795 - 10532883
Alignment:
Q  173 gtgacttaagtcacgcaccactgacatgtgcgtgagttaatccacgcaggttggccggtggtctgagcacaagaacacacgttttttgg 261  Q
    |||| |||||||| ||||||||| | |||||| |||||||  |||||| |||||||||||||| ||||  ||||||| |||||||||||    
T  10532795 gtgagttaagtcatgcaccactggcttgtgcgcgagttaactcacgcaagttggccggtggtcagagctgaagaacaaacgttttttgg 10532883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 124 - 196
Target Start/End: Original strand, 12144001 - 12144072
Alignment:
Q  124 agttaagtcacgcagcgtgacttaactcacgcacctagtagagctcagcgtgacttaagtcacgcaccactga 196  Q
    ||||||||||||||||| ||||||||||||||||||   | ||||  ||||||||||||||||||||||||||    
T  12144001 agttaagtcacgcagcgagacttaactcacgcacctcaca-agctttgcgtgacttaagtcacgcaccactga 12144072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 124 - 267
Target Start/End: Original strand, 16100835 - 16100978
Alignment:
Q  124 agttaagtcacgcagcgtgacttaactcacgcacctagtagagctcagcgtgacttaagtcacgcaccactgacatgtgcgtgagttaatccacgcaggt 223  Q
    |||||||||| ||  |||| ||||||||||||||||  || ||  | |||||||||||||||||||||| |  | |||||| |||||||  |||||| ||    
T  16100835 agttaagtcatgcgacgtggcttaactcacgcaccttata-agtcctgcgtgacttaagtcacgcaccatttgcctgtgcgcgagttaactcacgcaagt 16100933  T
Q  224 tggccggtggtctgagcacaagaacacacgttttt-tggacggtg 267  Q
    ||||||||| ||||  | |||||| |||||||||| |||||||||    
T  16100934 tggccggtgatctgtcctcaagaagacacgtttttgtggacggtg 16100978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 124 - 294
Target Start/End: Complemental strand, 1173068 - 1172899
Alignment:
Q  124 agttaagtcacgcagcgtgacttaactcacgcacctagtagagctcagcgtgacttaagtcacgcaccactgacatgtgcgtgagttaatccacgcaggt 223  Q
    ||||||||||||||||||||||||||   |||||||  || | ||| ||||||||||||| ||||||||||| | | ||||  ||||||  ||||||  |    
T  1173068 agttaagtcacgcagcgtgacttaacaagcgcaccttata-acctctgcgtgacttaagttacgcaccactggcctatgcgccagttaactcacgcacct 1172970  T
Q  224 tggccggtggtctgagcacaagaacacacgttttttggacggtgatcaggttttcaaccttgattctacac 294  Q
    ||| || ||||  ||||  ||||||| ||||||||||| |  || ||||||||||||| || |||| ||||    
T  1172969 tggtcgatggttagagctgaagaacaaacgttttttggtctttggtcaggttttcaacattcattccacac 1172899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 103 - 150
Target Start/End: Complemental strand, 40017303 - 40017255
Alignment:
Q  103 cgctagtgtatttttt-acctaagttaagtcacgcagcgtgacttaact 150  Q
    |||||||||||||||| ||||||||||||||||| ||||||||||||||    
T  40017303 cgctagtgtatttttttacctaagttaagtcacgtagcgtgacttaact 40017255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 96 - 150
Target Start/End: Original strand, 6270697 - 6270753
Alignment:
Q  96 taacaagcgctagtgtatttt--ttacctaagttaagtcacgcagcgtgacttaact 150  Q
    ||||| |||||||||||||||  ||||||||||||||||||| || |||||||||||    
T  6270697 taacatgcgctagtgtattttttttacctaagttaagtcacgtagggtgacttaact 6270753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 124 - 261
Target Start/End: Original strand, 6427238 - 6427374
Alignment:
Q  124 agttaagtcacgcagcgtgacttaactcacgcacctagtagagctcagcgtgacttaagtcacgcaccactgacatgtgcgtgagttaatccacgcaggt 223  Q
    |||||||||  ||||||||||||||||  |||||||  || | ||  |||||||||||||||||||| |||| | | |||| |||||||  ||||||  |    
T  6427238 agttaagtcttgcagcgtgacttaactagcgcaccttataaa-ctatgcgtgacttaagtcacgcacaactggcctatgcgcgagttaactcacgcacct 6427336  T
Q  224 tggccggtggtctgagcacaagaacacacgttttttgg 261  Q
    ||||||||| |  ||||  ||||||| |||||||||||    
T  6427337 tggccggtgattagagctgaagaacaaacgttttttgg 6427374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 148
Target Start/End: Original strand, 1974249 - 1974329
Alignment:
Q  69 acctatgttaagttacgctatgtgacataacaagcgctagtgtatttt-ttacctaagttaagtcacgcagcgtgacttaa 148  Q
    |||||||||||||  |  |||||||| ||||| ||||||||||||||| ||  ||||||||||||||| || |||||||||    
T  1974249 acctatgttaagtcgcattatgtgacttaacatgcgctagtgtattttgttgtctaagttaagtcacgtagtgtgacttaa 1974329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 124 - 196
Target Start/End: Original strand, 2786687 - 2786758
Alignment:
Q  124 agttaagtcacgcagcgtgacttaactcacgcacctagtagagctcagcgtgacttaagtcacgcaccactga 196  Q
    ||||||||| |||| || ||||||||||||||||||   | ||||| ||||||||||||||| ||||||||||    
T  2786687 agttaagtcgcgcaacgagacttaactcacgcacctcaca-agctctgcgtgacttaagtcatgcaccactga 2786758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 124 - 159
Target Start/End: Original strand, 8688171 - 8688206
Alignment:
Q  124 agttaagtcacgcagcgtgacttaactcacgcacct 159  Q
    |||||||||| |||||||||||||||||||||||||    
T  8688171 agttaagtcatgcagcgtgacttaactcacgcacct 8688206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 106 - 148
Target Start/End: Complemental strand, 1975230 - 1975186
Alignment:
Q  106 tagtgtatttttt--acctaagttaagtcacgcagcgtgacttaa 148  Q
    |||||||||||||  ||||||||||||||||| ||||||||||||    
T  1975230 tagtgtatttttttaacctaagttaagtcacgtagcgtgacttaa 1975186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 124 - 157
Target Start/End: Complemental strand, 24531060 - 24531027
Alignment:
Q  124 agttaagtcacgcagcgtgacttaactcacgcac 157  Q
    ||||||||||||||| ||||||||||||||||||    
T  24531060 agttaagtcacgcagtgtgacttaactcacgcac 24531027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 96 - 132
Target Start/End: Original strand, 1974226 - 1974262
Alignment:
Q  96 taacaagcgctagtgtattttttacctaagttaagtc 132  Q
    ||||| |||||||||||||||||||||| ||||||||    
T  1974226 taacatgcgctagtgtattttttacctatgttaagtc 1974262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 171 - 263
Target Start/End: Complemental strand, 28784856 - 28784764
Alignment:
Q  171 gcgtgacttaagtcacgcaccactgacatgtgcgtgagttaatccacgcaggttggccggtggtctgagcacaagaacacacgttttttggac 263  Q
    |||||||||||||||| | |||||| | || | | |||||||  |||||| ||||| |||||||| || |  ||||||| |||||||||||||    
T  28784856 gcgtgacttaagtcacaccccactggcctgggtgcgagttaactcacgcacgttggtcggtggtcagaactgaagaacaaacgttttttggac 28784764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 3e-24; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 123 - 284
Target Start/End: Original strand, 41871686 - 41871846
Alignment:
Q  123 aagttaagtcacgcagcgtgacttaactcacgcacctagtagagctcagcgtgacttaagtcacgcaccactgacatgtgcgtgagttaatccacgcagg 222  Q
    |||||||||||||| || ||||||||||  |||||||  || | ||| | ||||||||||| ||||||||||| | | |||| |||||||  |||||| |    
T  41871686 aagttaagtcacgctgcatgacttaacttgcgcaccttata-acctctgtgtgacttaagtaacgcaccactggcctatgcgcgagttaactcacgcacg 41871784  T
Q  223 ttggccggtggtctgagcacaagaacacacgttttttggacggtgatcaggttttcaacctt 284  Q
    ||||||||||||  || |  ||||||| ||||||||||||||||| ||||||||||||||||    
T  41871785 ttggccggtggtaagaactgaagaacaaacgttttttggacggtggtcaggttttcaacctt 41871846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 126 - 267
Target Start/End: Original strand, 47983638 - 47983778
Alignment:
Q  126 ttaagtcacgcagcgtgacttaactcacgcacctagtagagctcagcgtgacttaagtcacgcaccactgacatgtgcgtgagttaatccacgcaggttg 225  Q
    ||||||||||||||||||||||||| ||||||||  ||  | || |||||| |||||||||  ||||||| |||||||| |||||||   ||||| ||||    
T  47983638 ttaagtcacgcagcgtgacttaactaacgcaccttatat-gttctgcgtgagttaagtcacttaccactggcatgtgcgcgagttaactgacgcacgttg 47983736  T
Q  226 gccggtggtctgagcacaagaacacacgttttttggacggtg 267  Q
    |||||||||| || |  |||||||||||||||||||||||||    
T  47983737 gccggtggtcagaactaaagaacacacgttttttggacggtg 47983778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 168 - 284
Target Start/End: Original strand, 49597190 - 49597306
Alignment:
Q  168 tcagcgtgacttaagtcacgcaccactgacatgtgcgtgagttaatccacgcaggttggccggtggtctgagcacaagaacacacgttttttggacggtg 267  Q
    |||||||||||||||||||||||||||| | | |||| |||||||  |||||| ||||| |||||||| || |  ||||||| ||| |||||||||||||    
T  49597190 tcagcgtgacttaagtcacgcaccactggcctatgcgcgagttaactcacgcacgttggtcggtggtcagaactaaagaacaaacgatttttggacggtg 49597289  T
Q  268 atcaggttttcaacctt 284  Q
     ||||||||||||||||    
T  49597290 gtcaggttttcaacctt 49597306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 124 - 263
Target Start/End: Complemental strand, 5770694 - 5770556
Alignment:
Q  124 agttaagtcacgcagcgtgacttaactcacgcacctagtagagctcagcgtgacttaagtcacgcaccactgacatgtgcgtgagttaatccacgcaggt 223  Q
    ||||||||||||| ||||||||||||||||||||||  || ||||  ||||| ||||||||||||||||||| | |||||| ||| |||  |||||| |     
T  5770694 agttaagtcacgctgcgtgacttaactcacgcaccttata-agctttgcgtggcttaagtcacgcaccactggcctgtgcgcgagctaactcacgcaagg 5770596  T
Q  224 tggccggtggtctgagcacaagaacacacgttttttggac 263  Q
    |||||||||||  |||| ||| |||||||||||| |||||    
T  5770595 tggccggtggttagagctcaaaaacacacgttttatggac 5770556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 124 - 234
Target Start/End: Original strand, 10308428 - 10308537
Alignment:
Q  124 agttaagtcacgcagcgtgacttaactcacgcacctagtagagctcagcgtgacttaagtcacgcaccactgacatgtgcgtgagttaatccacgcaggt 223  Q
    ||||||||||||||||| ||||||||||||||||||   | ||||  | ||||||||||||||||||||||| ||||||||||||||||    |||| ||    
T  10308428 agttaagtcacgcagcgagacttaactcacgcacctcaca-agctttgtgtgacttaagtcacgcaccactggcatgtgcgtgagttaacttgcgcaagt 10308526  T
Q  224 tggccggtggt 234  Q
    |||||||||||    
T  10308527 tggccggtggt 10308537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 171 - 281
Target Start/End: Original strand, 11012136 - 11012246
Alignment:
Q  171 gcgtgacttaagtcacgcaccactgacatgtgcgtgagttaatccacgcaggttggccggtggtctgagcacaagaacacacgttttttggacggtgatc 270  Q
    |||||| ||||||| | |||||||| | || |||||||||||  |||||| ||||||||||||| ||||| || ||||| ||||||||||||||||| ||    
T  11012136 gcgtgagttaagtcgcacaccactggcctgggcgtgagttaactcacgcacgttggccggtggtatgagctcatgaacaaacgttttttggacggtggtc 11012235  T
Q  271 aggttttcaac 281  Q
    | |||||||||    
T  11012236 aagttttcaac 11012246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 124 - 261
Target Start/End: Complemental strand, 23603090 - 23602952
Alignment:
Q  124 agttaagtcacgcagcgtgacttaactcacgcacctagtagagctcagcgtgacttaagtcacgcaccactgacatgtgcgtgagttaatccacgcaggt 223  Q
    ||||||||||||  ||||||||||||||  ||| ||| || | |||||||||||||||||||||||| |||  | |||||| |||||||  | |||||||    
T  23603090 agttaagtcacgttgcgtgacttaactcgtgcatctaatatatctcagcgtgacttaagtcacgcacaactagcttgtgcgcgagttaactcgcgcaggt 23602991  T
Q  224 tggcc-ggtggtctgagcacaagaacacacgttttttgg 261  Q
    ||||| | | ||| |||| ||||||||||||||||||||    
T  23602990 tggccagttagtcagagctcaagaacacacgttttttgg 23602952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 69 - 150
Target Start/End: Original strand, 39650289 - 39650373
Alignment:
Q  69 acctatgttaagttacgctatgtgacataacaagcgctagtgta---ttttttacctaagttaagtcacgcagcgtgacttaact 150  Q
    ||||||||||||| |||||| ||||| ||||| |||||||||||   ||||||||||||||||||||||| ||||||||||||||    
T  39650289 acctatgttaagtcacgctacgtgacttaacatgcgctagtgtatttttttttacctaagttaagtcacgtagcgtgacttaact 39650373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 171 - 284
Target Start/End: Original strand, 48566758 - 48566871
Alignment:
Q  171 gcgtgacttaagtcacgcaccactgacatgtgcgtgagttaatccacgcaggttggccggtggtctgagcacaagaacacacgttttttggacggtgatc 270  Q
    |||||||||||||||||||  |||| | | |||| |||||||  |||||| |||||| ||||||| || |  ||||||| ||||||||||||||||| ||    
T  48566758 gcgtgacttaagtcacgcattactggcctatgcgcgagttaactcacgcacgttggctggtggtcagaactgaagaacaaacgttttttggacggtggtc 48566857  T
Q  271 aggttttcaacctt 284  Q
    ||||||||||||||    
T  48566858 aggttttcaacctt 48566871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 124 - 259
Target Start/End: Complemental strand, 3660309 - 3660175
Alignment:
Q  124 agttaagtcacgcagcgtgacttaactcacgcacctagtagagctcagcgtgacttaagtcacgcaccactgacatgtgcgtgagttaatccacgcaggt 223  Q
    ||||||||| | |||||||||||||||  |||||||  || ||||| |||||||||||||||||||||| || | | |||| |||||||  ||||||  |    
T  3660309 agttaagtcgcacagcgtgacttaactagcgcaccttata-agctctgcgtgacttaagtcacgcaccattggcctatgcgcgagttaactcacgcacct 3660211  T
Q  224 tggccggtggtctgagcacaagaacacacgtttttt 259  Q
    |||||||||||| ||||  ||||||| |||||||||    
T  3660210 tggccggtggtcagagctgaagaacaaacgtttttt 3660175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 173 - 284
Target Start/End: Original strand, 9343499 - 9343610
Alignment:
Q  173 gtgacttaagtcacgcaccactgacatgtgcgtgagttaatccacgcaggttggccggtggtctgagcacaagaacacacgttttttggacggtgatcag 272  Q
    |||| |||||||| |||| |||| |||| ||  |||||||  ||||||||||  |||||| || |||| ||||| |||||||||||||||||||| ||||    
T  9343499 gtgagttaagtcatgcactactggcatgggcacgagttaactcacgcaggttaaccggtgatccgagctcaagagcacacgttttttggacggtggtcag 9343598  T
Q  273 gttttcaacctt 284  Q
    ||||||||||||    
T  9343599 gttttcaacctt 9343610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 126 - 259
Target Start/End: Original strand, 21482862 - 21482994
Alignment:
Q  126 ttaagtcacgcagcgtgacttaactcacgcacctagtagagctcagcgtgacttaagtcacgcaccactgacatgtgcgtgagttaatccacgcaggttg 225  Q
    ||||||||||||||||||||||||| || |||||  || ||||| ||||||||||||||||||||||||  | | |||  |||||||  |||||| ||||    
T  21482862 ttaagtcacgcagcgtgacttaactaacacaccttata-agctctgcgtgacttaagtcacgcaccactagcctatgcacgagttaactcacgcacgttg 21482960  T
Q  226 gccggtggtctgagcacaagaacacacgtttttt 259  Q
    |||| ||||| ||||  ||||||| || ||||||    
T  21482961 gccgatggtcagagctgaagaacaaacttttttt 21482994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 171 - 267
Target Start/End: Complemental strand, 18844064 - 18843968
Alignment:
Q  171 gcgtgacttaagtcacgcaccactgacatgtgcgtgagttaatccacgcaggttggccggtggtctgagcacaagaacacacgttttttggacggtg 267  Q
    |||||||||||||||| ||||||||  |||||||  ||||||  |||||| ||||||||||| || || |  ||||||||||||||||| |||||||    
T  18844064 gcgtgacttaagtcacacaccactggtatgtgcgcaagttaactcacgcacgttggccggtgatcagaactgaagaacacacgttttttagacggtg 18843968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 124 - 196
Target Start/End: Complemental strand, 33686676 - 33686605
Alignment:
Q  124 agttaagtcacgcagcgtgacttaactcacgcacctagtagagctcagcgtgacttaagtcacgcaccactga 196  Q
    ||||||||||||||||| ||||||||||||||||||   | ||||  ||||||||||||||||||||||||||    
T  33686676 agttaagtcacgcagcgagacttaactcacgcacctcaca-agctttgcgtgacttaagtcacgcaccactga 33686605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 96 - 150
Target Start/End: Original strand, 47485508 - 47485564
Alignment:
Q  96 taacaagcgctagtgtatttt--ttacctaagttaagtcacgcagcgtgacttaact 150  Q
    ||||| |||||||||||||||  ||||||||||||||||||| ||||||||||||||    
T  47485508 taacatgcgctagtgtattttttttacctaagttaagtcacgtagcgtgacttaact 47485564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 124 - 263
Target Start/End: Complemental strand, 5766955 - 5766817
Alignment:
Q  124 agttaagtcacgcagcgtgacttaactcacgcacctagtagagctcagcgtgacttaagtcacgcaccactgacatgtgcgtgagttaatccacgcaggt 223  Q
    ||||||||||||| || || |||||||||| |||||  || ||||  ||||| ||||||||||||||||||| | |||||| |||||||  ||| || |     
T  5766955 agttaagtcacgctgcatggcttaactcacacaccttata-agctttgcgtggcttaagtcacgcaccactggcctgtgcgcgagttaactcacacaagg 5766857  T
Q  224 tggccggtggtctgagcacaagaacacacgttttttggac 263  Q
    || ||||||||  ||||  || ||||||| ||||||||||    
T  5766856 tgaccggtggttagagcttaaaaacacactttttttggac 5766817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 173 - 260
Target Start/End: Original strand, 18178920 - 18179007
Alignment:
Q  173 gtgacttaagtcacgcaccactgacatgtgcgtgagttaatccacgcaggttggccggtggtctgagcacaagaacacacgttttttg 260  Q
    ||||||||||||| ||| |||||||||| |||  ||||||  |||||||||||| || |||||||| | ||| |||| ||||||||||    
T  18178920 gtgacttaagtcatgcatcactgacatgagcgcaagttaactcacgcaggttggtcgatggtctgaactcaaaaacatacgttttttg 18179007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 124 - 295
Target Start/End: Original strand, 39222657 - 39222827
Alignment:
Q  124 agttaagtcacgcagcgtgacttaactcacgcacctagtagagctcagcgtgacttaagtcacgcaccactgacatgtgcgtgagttaatccacgcaggt 223  Q
    |||||||||||||||||||||||||||  ||| |||  || | ||  |||||||||||||||||||||| || | | |||  |||||||  ||||||       
T  39222657 agttaagtcacgcagcgtgacttaactagcgcgccttata-atctatgcgtgacttaagtcacgcaccaatggcctatgcacgagttaactcacgcacca 39222755  T
Q  224 tggccggtggtctgagcacaagaacacacgttttttggacggtgatcaggttttcaaccttgattctacacg 295  Q
    ||| |||||||| ||||  ||||||| ||||||||||| |  ||||||| ||| |||| || |||| |||||    
T  39222756 tggtcggtggtcagagctgaagaacaaacgttttttggtccttgatcagttttccaacattcattccacacg 39222827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 201 - 284
Target Start/End: Original strand, 46178671 - 46178754
Alignment:
Q  201 tgcgtgagttaatccacgcaggttggccggtggtctgagcacaagaacacacgttttttggacggtgatcaggttttcaacctt 284  Q
    |||| |||||||  |||||| |||| ||||||||| || |  ||||||| ||||||||||| ||||| ||||||||||||||||    
T  46178671 tgcgcgagttaactcacgcatgttgaccggtggtcagaactgaagaacaaacgttttttggccggtggtcaggttttcaacctt 46178754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 96 - 149
Target Start/End: Original strand, 39650266 - 39650319
Alignment:
Q  96 taacaagcgctagtgtattttttacctaagttaagtcacgcagcgtgacttaac 149  Q
    ||||| ||||||||||||||| |||||| ||||||||||||  |||||||||||    
T  39650266 taacatgcgctagtgtattttctacctatgttaagtcacgctacgtgacttaac 39650319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 124 - 196
Target Start/End: Original strand, 12926782 - 12926853
Alignment:
Q  124 agttaagtcacgcagcgtgacttaactcacgcacctagtagagctcagcgtgacttaagtcacgcaccactga 196  Q
    ||||||||||||||||| ||||||||||| ||||||   | ||||| ||| ||||||||||| ||||||||||    
T  12926782 agttaagtcacgcagcgagacttaactcatgcacctcaca-agctctgcgcgacttaagtcatgcaccactga 12926853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 124 - 159
Target Start/End: Complemental strand, 1671458 - 1671423
Alignment:
Q  124 agttaagtcacgcagcgtgacttaactcacgcacct 159  Q
    ||||||||||||||||||||||||| ||||||||||    
T  1671458 agttaagtcacgcagcgtgacttaattcacgcacct 1671423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 124 - 159
Target Start/End: Original strand, 30858451 - 30858486
Alignment:
Q  124 agttaagtcacgcagcgtgacttaactcacgcacct 159  Q
    |||||||||| |||||||||||||||||||||||||    
T  30858451 agttaagtcatgcagcgtgacttaactcacgcacct 30858486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 103 - 196
Target Start/End: Original strand, 20447100 - 20447191
Alignment:
Q  103 cgctagtgtattttttacctaagttaagtcacgcagcgtgacttaactcacgcacctagtagagctcagcgtgacttaagtcacgcaccactga 196  Q
    |||||||||||  ||||| |  |||||||||||| |||||||||||||||| ||| |  || ||||  ||||||||||||| ||||||| ||||    
T  20447100 cgctagtgtatactttacatgtgttaagtcacgctgcgtgacttaactcacacacgt--tatagctttgcgtgacttaagttacgcacccctga 20447191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 103 - 196
Target Start/End: Original strand, 20532863 - 20532954
Alignment:
Q  103 cgctagtgtattttttacctaagttaagtcacgcagcgtgacttaactcacgcacctagtagagctcagcgtgacttaagtcacgcaccactga 196  Q
    |||||||||||  ||||| |  |||||||||||| |||||||||||||||| ||| |  || ||||  ||||||||||||| ||||||| ||||    
T  20532863 cgctagtgtatactttacatgtgttaagtcacgctgcgtgacttaactcacacacgt--tatagctttgcgtgacttaagttacgcacccctga 20532954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 127 - 156
Target Start/End: Complemental strand, 37708081 - 37708052
Alignment:
Q  127 taagtcacgcagcgtgacttaactcacgca 156  Q
    ||||||||||||||||||||||||||||||    
T  37708081 taagtcacgcagcgtgacttaactcacgca 37708052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 124 - 152
Target Start/End: Original strand, 5770668 - 5770696
Alignment:
Q  124 agttaagtcacgcagcgtgacttaactca 152  Q
    |||||||||||||||||||||||||||||    
T  5770668 agttaagtcacgcagcgtgacttaactca 5770696  T

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Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 124 - 156
Target Start/End: Original strand, 23603064 - 23603096
Alignment:
Q  124 agttaagtcacgcagcgtgacttaactcacgca 156  Q
    |||||||||||||| ||||||||||||||||||    
T  23603064 agttaagtcacgcaacgtgacttaactcacgca 23603096  T

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Target: chr2 (Bit Score: 55; Significance: 2e-22; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 69 - 150
Target Start/End: Complemental strand, 22496058 - 22495976
Alignment:
Q  69 acctatgttaagttacgctatgtgacataacaagcgctagtgtatttttt-acctaagttaagtcacgcagcgtgacttaact 150  Q
    ||||||||||||| |||||| ||||| ||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||    
T  22496058 acctatgttaagtcacgctacgtgacttaacatgcgctagtgtatttttttacctaagttaagtcacgtagcgtgacttaact 22495976  T

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Target: chr2; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 124 - 294
Target Start/End: Complemental strand, 29132767 - 29132598
Alignment:
Q  124 agttaagtcacgcagcgtgacttaactcacgcacctagtagagctcagcgtgacttaagtcacgcaccactgacatgtgcgtgagttaatccacgcaggt 223  Q
    |||||||||||||| |||||||||||| ||||||||  || || ||  |||||||||||||||||||||| | | | |||| |||||||  |||||| ||    
T  29132767 agttaagtcacgcaacgtgacttaactaacgcaccttata-agttctacgtgacttaagtcacgcaccaccggcctatgcgcgagttaactcacgcacgt 29132669  T
Q  224 tggccggtggtctgagcacaagaacacacgttttttggacggtgatcaggttttcaaccttgattctacac 294  Q
    |||||||||||| ||||  ||||||| ||||||||||| |  || |||| |||||||| || |||| ||||    
T  29132668 tggccggtggtcagagctgaagaacaaacgttttttggtctttggtcagtttttcaacattcattccacac 29132598  T

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Target: chr2; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 123 - 281
Target Start/End: Original strand, 29908456 - 29908613
Alignment:
Q  123 aagttaagtcacgcagcgtgacttaactcacgcacctagtagagctcagcgtgacttaagtcacgcaccactgacatgtgcgtgagttaatccacgcagg 222  Q
    ||||||||| |||| |||||||||||||  |||||||  || | ||| |||||||||||||||||| |||||| | | |||| |||||||  || ||| |    
T  29908456 aagttaagttacgctgcgtgacttaacttgcgcaccttata-acctctgcgtgacttaagtcacgcgccactggcctatgcgcgagttaactcatgcacg 29908554  T
Q  223 ttggccggtggtctgagcacaagaacacacgttttttggacggtgatcaggttttcaac 281  Q
    ||||||||||||  || |  ||||||| ||||||||||||||||| |||||||||||||    
T  29908555 ttggccggtggttagaactgaagaacaaacgttttttggacggtggtcaggttttcaac 29908613  T

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Target: chr2; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 72 - 150
Target Start/End: Original strand, 11713055 - 11713133
Alignment:
Q  72 tatgttaagttacgctatgtgacataacaagcgctagtgtattttttacctaagttaagtcacgcagcgtgacttaact 150  Q
    |||||||||| | |||| ||||| ||||| ||||||||||||||| |||||||||||||||||| ||||||||||||||    
T  11713055 tatgttaagtcatgctacgtgacttaacatgcgctagtgtattttgtacctaagttaagtcacgtagcgtgacttaact 11713133  T

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Target: chr2; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 173 - 295
Target Start/End: Original strand, 13785046 - 13785168
Alignment:
Q  173 gtgacttaagtcacgcaccactgacatgtgcgtgagttaatccacgcaggttggccggtggtctgagcacaagaacacacgttttttggacggtgatcag 272  Q
    |||| ||||||||||||||| || | |  | | |||||||  |||||| |||||||| |||||||||| || ||||| ||||||||||||||||| ||||    
T  13785046 gtgagttaagtcacgcaccattggcctaagtgcgagttaactcacgcacgttggccgatggtctgagctcatgaacaaacgttttttggacggtggtcag 13785145  T
Q  273 gttttcaaccttgattctacacg 295  Q
    ||||||||| || | ||||||||    
T  13785146 gttttcaactttcaatctacacg 13785168  T

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Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 69 - 150
Target Start/End: Complemental strand, 42121978 - 42121895
Alignment:
Q  69 acctatgttaagttacgctatgtgacataacaagcgctagtgtatt--ttttacctaagttaagtcacgcagcgtgacttaact 150  Q
    ||||||||||||| || ||| ||||| ||||| |||||||||||||  ||||||||||||||||||||| || |||||| ||||    
T  42121978 acctatgttaagtcacactacgtgacttaacatgcgctagtgtattttttttacctaagttaagtcacgtagtgtgactgaact 42121895  T

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Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 201 - 295
Target Start/End: Complemental strand, 24937453 - 24937359
Alignment:
Q  201 tgcgtgagttaatccacgcaggttggccggtggtctgagcacaagaacacacgttttttggacggtgatcaggttttcaaccttgattctacacg 295  Q
    |||| |||||||  |||||| ||||||||||| || || | |  ||||| ||||||||||||||||| |||||||||||||||| |||| |||||    
T  24937453 tgcgcgagttaactcacgcacgttggccggtgatcagaactcttgaacaaacgttttttggacggtggtcaggttttcaaccttcattccacacg 24937359  T

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Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 201 - 295
Target Start/End: Complemental strand, 25686109 - 25686015
Alignment:
Q  201 tgcgtgagttaatccacgcaggttggccggtggtctgagcacaagaacacacgttttttggacggtgatcaggttttcaaccttgattctacacg 295  Q
    |||| |||||||  |||||| |||||| ||||||| || | |  ||||| ||||||||||||||||| |||||||||||||||| |||| |||||    
T  25686109 tgcgcgagttaactcacgcacgttggctggtggtcagaactcttgaacaaacgttttttggacggtggtcaggttttcaaccttcattccacacg 25686015  T

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Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 124 - 212
Target Start/End: Complemental strand, 16710335 - 16710248
Alignment:
Q  124 agttaagtcacgcagcgtgacttaactcacgcacctagtagagctcagcgtgacttaagtcacgcaccactgacatgtgcgtgagttaa 212  Q
    |||||||||||||||| |||||||||| ||||| ||  ||  | || |||||| ||||||||||||||||||||||||||  |||||||    
T  16710335 agttaagtcacgcagcatgacttaactaacgcatcttatat-gttctgcgtgagttaagtcacgcaccactgacatgtgcacgagttaa 16710248  T

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Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 124 - 196
Target Start/End: Complemental strand, 41192515 - 41192444
Alignment:
Q  124 agttaagtcacgcagcgtgacttaactcacgcacctagtagagctcagcgtgacttaagtcacgcaccactga 196  Q
    ||||||||||||||||| ||||||||||||||||||   | ||||| | |||||||||||||| |||||||||    
T  41192515 agttaagtcacgcagcgagacttaactcacgcacctcaca-agctctgtgtgacttaagtcacacaccactga 41192444  T

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Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 131 - 194
Target Start/End: Original strand, 37057161 - 37057223
Alignment:
Q  131 tcacgcagcgtgacttaactcacgcacctagtagagctcagcgtgacttaagtcacgcaccact 194  Q
    |||||| ||||||||||||||||||||||   | ||||| ||||||||||||||||||||||||    
T  37057161 tcacgctgcgtgacttaactcacgcacctcaca-agctctgcgtgacttaagtcacgcaccact 37057223  T

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Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 125 - 234
Target Start/End: Complemental strand, 5290831 - 5290722
Alignment:
Q  125 gttaagtcacgcagcgtgacttaactcacgcacctagtagagctcagcgtgacttaagtcacgcaccactga-catgtgcgtgagttaatccacgcaggt 223  Q
    |||||||||||| | ||||||||||||| | ||||   | ||||| |||||||||||||||||||||||||| | | ||||||||||||  | |||| ||    
T  5290831 gttaagtcacgctgtgtgacttaactcatgtacctctca-agctctgcgtgacttaagtcacgcaccactgagcctatgcgtgagttaactcgcgcaagt 5290733  T
Q  224 tggccggtggt 234  Q
    ||| |||||||    
T  5290732 tggacggtggt 5290722  T

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Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 171 - 261
Target Start/End: Original strand, 28266007 - 28266097
Alignment:
Q  171 gcgtgacttaagtcacgcaccactgacatgtgcgtgagttaatccacgcaggttggccggtggtctgagcacaagaacacacgttttttgg 261  Q
    |||||| ||| ||||||||||||||||||||||| |||||||  |||||| ||||  |||||||| |||   ||||||| || ||||||||    
T  28266007 gcgtgagttaggtcacgcaccactgacatgtgcgcgagttaactcacgcacgttgatcggtggtcagagacgaagaacaaacattttttgg 28266097  T

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Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 124 - 196
Target Start/End: Complemental strand, 5814668 - 5814596
Alignment:
Q  124 agttaagtcacgcagcgtgacttaactcacgcacctagtagagctcagcgtgac-ttaagtcacgcaccactga 196  Q
    ||||||||||||||||| ||||||||||||||||||   | ||||| ||||||| ||||||||||||| |||||    
T  5814668 agttaagtcacgcagcgagacttaactcacgcacctcaca-agctctgcgtgactttaagtcacgcactactga 5814596  T

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Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 96 - 149
Target Start/End: Complemental strand, 18394978 - 18394925
Alignment:
Q  96 taacaagcgctagtgtattttttacctaagttaagtcacgcagcgtgacttaac 149  Q
    ||||| |||||||||||||||||||||| ||||||||| ||  |||||||||||    
T  18394978 taacatgcgctagtgtattttttacctatgttaagtcaagctacgtgacttaac 18394925  T

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Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 124 - 156
Target Start/End: Original strand, 6903821 - 6903853
Alignment:
Q  124 agttaagtcacgcagcgtgacttaactcacgca 156  Q
    |||||||||||||||||||||||||||||||||    
T  6903821 agttaagtcacgcagcgtgacttaactcacgca 6903853  T

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Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 124 - 212
Target Start/End: Original strand, 1887873 - 1887961
Alignment:
Q  124 agttaagtcacgcagcgtgacttaactcacgcacctagtagagctcagcgtgacttaagtcacgcaccactga-catgtgcgtgagttaa 212  Q
    |||||||||||||| ||| ||||||| |||||||||   | ||||| |||||||||||||||||| | ||||| ||| |||| |||||||    
T  1887873 agttaagtcacgcaacgtcacttaacacacgcacctcaca-agctctgcgtgacttaagtcacgcccaactgatcatatgcgcgagttaa 1887961  T

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Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 149
Target Start/End: Complemental strand, 42122001 - 42121948
Alignment:
Q  96 taacaagcgctagtgtattttttacctaagttaagtcacgcagcgtgacttaac 149  Q
    ||||| ||| |||||||||||||||||| |||||||||| |  |||||||||||    
T  42122001 taacatgcgttagtgtattttttacctatgttaagtcacactacgtgacttaac 42121948  T

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Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 172 - 212
Target Start/End: Original strand, 12874244 - 12874284
Alignment:
Q  172 cgtgacttaagtcacgcaccactgacatgtgcgtgagttaa 212  Q
    |||||||||||||||||||||||||| | |||| |||||||    
T  12874244 cgtgacttaagtcacgcaccactgacctatgcgcgagttaa 12874284  T

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Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 124 - 156
Target Start/End: Complemental strand, 30398246 - 30398214
Alignment:
Q  124 agttaagtcacgcagcgtgacttaactcacgca 156  Q
    |||||||||||||| ||||||||||||||||||    
T  30398246 agttaagtcacgcatcgtgacttaactcacgca 30398214  T

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Target: scaffold0223 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 172 - 294
Target Start/End: Complemental strand, 16168 - 16045
Alignment:
Q  172 cgtgacttaagtcacgcaccactgacatgtgcgtgagttaatccacgcaggttggccgg-tggtctgagcacaagaacacacgttttttggacggtgatc 270  Q
    ||||||||||||||||| ||| || | |||||| | |||||  |||||||||||||||| ||||| |||| ||| ||||||||||||||||||  |  ||    
T  16168 cgtgacttaagtcacgctccagtggcctgtgcgcgtgttaactcacgcaggttggccggttggtcagagctcaaaaacacacgttttttggactttagtc 16069  T
Q  271 aggttttcaaccttgattctacac 294  Q
    || ||||||||||| | |||||||    
T  16068 agcttttcaaccttcaatctacac 16045  T

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Target: scaffold1455 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold1455
Description:

Target: scaffold1455; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 72 - 150
Target Start/End: Complemental strand, 355 - 277
Alignment:
Q  72 tatgttaagttacgctatgtgacataacaagcgctagtgtattttttacctaagttaagtcacgcagcgtgacttaact 150  Q
    |||||||||| |||||| ||||| ||| | ||||| ||||||||| |||||| ||||||||||||  ||||||||||||    
T  355 tatgttaagtcacgctacgtgacttaatatgcgctggtgtattttgtacctatgttaagtcacgctacgtgacttaact 277  T

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Target: scaffold0861 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0861
Description:

Target: scaffold0861; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 174 - 261
Target Start/End: Complemental strand, 3808 - 3721
Alignment:
Q  174 tgacttaagtcacgcaccactgacatgtgcgtgagttaatccacgcaggttggccggtggtctgagcacaagaacacacgttttttgg 261  Q
    ||||||||||||| |||||||| | | |||| |||||||  ||||||  |||||||||||||  |||  ||||||| |||||||||||    
T  3808 tgacttaagtcacacaccactggcctatgcgcgagttaactcacgcaccttggccggtggtcaaagctaaagaacaaacgttttttgg 3721  T

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Target: scaffold0217 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0217
Description:

Target: scaffold0217; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 124 - 281
Target Start/End: Original strand, 25553 - 25710
Alignment:
Q  124 agttaagtcacgcagcgtgacttaactcacgcacctagtagagctcagcgtgacttaagtcacgcaccactga-catgtgcgtgagttaatccacgcagg 222  Q
    ||||||||||||| |||||| |||| |||| |||||  || | ||  |||||||||||| |||| |||||  | | | |||| |||||||  |||||| |    
T  25553 agttaagtcacgctgcgtgatttaattcacacaccttata-atctatgcgtgacttaaggcacgtaccacccagcctttgcgcgagttaactcacgcaag 25651  T
Q  223 ttggccggtggtctgagcacaagaacacacgttttttggacggtgatcaggttttcaac 281  Q
    ||||||||||||| || |  ||||||| |||||||||  ||  ||||||||||||||||    
T  25652 ttggccggtggtcagaactgaagaacaaacgtttttttcactttgatcaggttttcaac 25710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0753 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0753
Description:

Target: scaffold0753; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 171 - 259
Target Start/End: Original strand, 3999 - 4088
Alignment:
Q  171 gcgtgacttaagtcacgcaccactga-catgtgcgtgagttaatccacgcaggttggccggtggtctgagcacaagaacacacgtttttt 259  Q
    |||||||||||||||||||||||||| | | | || |||||||  |||||| |||| ||||||||| || |  ||||||| |||||||||    
T  3999 gcgtgacttaagtcacgcaccactgagcctttccgcgagttaactcacgcaagttgaccggtggtcagaactgaagaacaaacgtttttt 4088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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