View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11045_high_9 (Length: 306)

Name: NF11045_high_9
Description: NF11045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11045_high_9
NF11045_high_9
[»] chr5 (3 HSPs)
chr5 (60-146)||(1700671-1700757)
chr5 (233-306)||(1700897-1700970)
chr5 (178-233)||(1700789-1700844)


Alignment Details
Target: chr5 (Bit Score: 83; Significance: 2e-39; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 60 - 146
Target Start/End: Original strand, 1700671 - 1700757
Alignment:
Q  60 ttatcattgtatggcagccaattcgagcagcggagcgatcactaccttcgggaaaagagtcatcaaccagatctggaagaacaacaa 146  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1700671 ttatcattgtatggcagccaattcgagcagcggatcgatcactaccttcgggaaaagagtcatcaaccagatctggaagaacaacaa 1700757  T

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Target: chr5; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 233 - 306
Target Start/End: Original strand, 1700897 - 1700970
Alignment:
Q  233 ttcatattcatattgtgatttgtgattaataagtcaagatttgtcatacttggaagttggaagttcatttgtac 306  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||    
T  1700897 ttcatattcatattgtgatttgtgattaataagtcaagatttctcatacttggaagttggaagttcattcgtac 1700970  T

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Target: chr5; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 178 - 233
Target Start/End: Original strand, 1700789 - 1700844
Alignment:
Q  178 gcatcaaggtataattttcattcattgtttaattactactgttgctatttcaattt 233  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1700789 gcatcaaggtataattttcattcattgtttaattactactgttgctatttcaattt 1700844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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