View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11045_low_10 (Length: 375)
Name: NF11045_low_10
Description: NF11045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11045_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 320; Significance: 1e-180; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 14 - 358
Target Start/End: Original strand, 51116495 - 51116843
Alignment:
| Q |
14 |
agaaaaaacaatattatggcgcacaggcaacaactttgaaagtattc----attcattcataagtcccagttactaaaactttgtaaatttttacctgaa |
109 |
Q |
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| T |
51116495 |
agaaaaaacaatattatggcgcacaggcaacaactttgaaagtattcattcattcattcataagtcccagttactaaaactttgtaaatttttacctgaa |
51116594 |
T |
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| Q |
110 |
cgagagcagaataaaagctaacgttattggaaactgtttgagaaacatttatgggtctagtactatggaaaagcgaatgtgaatatggcataaccgtagg |
209 |
Q |
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| T |
51116595 |
cgagagcagaataaaagctaacgttattggaaactgtttgagaaacatttatgggtctagtactatggaaaagcgaatgtgaatatggcataaccgtagg |
51116694 |
T |
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| Q |
210 |
gagagttttaggcttgggagtagaagcatgaggaaggtgggtgtaacatctgtaaaattggaatgacgctgttttcaacgtagactttccgattcggtgc |
309 |
Q |
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| T |
51116695 |
gagagttttaggcttgggagtagaagcatgaggaaggtgggtgtaacatctgtaaaattggaatgacgctgttttcaaagtagactttccgattctgtgc |
51116794 |
T |
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| Q |
310 |
aaaaacgccattaattacctcaactgaagttagtgttagtgttagtgtt |
358 |
Q |
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| T |
51116795 |
aaaaacgccattaattacttcaactgaagttagtgttagtgttagtgtt |
51116843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 149 - 234
Target Start/End: Original strand, 51109071 - 51109156
Alignment:
| Q |
149 |
gagaaacatttatgggtctagtactatggaaaagcgaatgtgaatatggcataaccgtagggagagttttaggcttgggagtagaa |
234 |
Q |
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| T |
51109071 |
gagaaacatttatgggtctagtattatggaaaagcgaatgcgaatatggcataacagtagggagagttttaggttcgggaatagaa |
51109156 |
T |
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