View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11045_low_20 (Length: 241)
Name: NF11045_low_20
Description: NF11045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11045_low_20 |
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Alignment Details
Target: chr6 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 2 - 235
Target Start/End: Complemental strand, 29090229 - 29089996
Alignment:
| Q |
2 |
ttatgcaaatatcgaatcatcacatcatttgccttggcattatccaccgtcaccgttaatatcttaccatacaatccccaatccctcaaataagtgtcaa |
101 |
Q |
| |
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||||||| |||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
29090229 |
ttatgcagatatcgaatcataacatcatttgccttggcattatccaccgttaccgttaatatcttaccatacaacccccaatccctcaaataagtgtcaa |
29090130 |
T |
|
| Q |
102 |
catatttacccaacatgtctcccgtgtgacccgtgatttggcaaaagttgatgattttcttgtgtagcttcaattcatgatcaacaaaatgaacggtcaa |
201 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |
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| T |
29090129 |
catatttacccaacatgtctcccgtgtgacccgtgatttggcaaaagttgatgattttcttgtgcagcttcaattcacgatcaacaaaatgaacggtcaa |
29090030 |
T |
|
| Q |
202 |
actcatgtaatttaagttttgatttgatgtccat |
235 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |
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| T |
29090029 |
actcatgtaatttaagttttgatttgatgtccat |
29089996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 5933529 - 5933763
Alignment:
| Q |
1 |
attatgcaaatatcgaatcatcacatcatttgccttggcattatccaccgtcaccgttaatatcttaccatacaatccccaatccctcaaataagtgtca |
100 |
Q |
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|
|||||||| |||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
5933529 |
attatgcagatatcgaatcataacatcatttgccttggcattatccaccgttaccgttaatatcttaccatacaagccccaatccctcaaataagtgtca |
5933628 |
T |
|
| Q |
101 |
acatatttacccaacatgtctcccgtgtgacccgtgatttggcaaaagttgatgattttcttgtgtagcttcaattcatgatcaacaaaatgaacggtca |
200 |
Q |
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|||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |
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| T |
5933629 |
acatatttacccaacatgtctcccatgtgacctatgatttggcaaaagttgatgattttcttgtgcagcttcaattcacgatcaacaaaatgaacggtca |
5933728 |
T |
|
| Q |
201 |
aactcatgtaatttaagttttgatttgatgtccat |
235 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |
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| T |
5933729 |
aactcatgtaatttaagttttgatttgatgtccat |
5933763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 2 - 235
Target Start/End: Complemental strand, 5935934 - 5935701
Alignment:
| Q |
2 |
ttatgcaaatatcgaatcatcacatcatttgccttggcattatccaccgtcaccgttaatatcttaccatacaatccccaatccctcaaataagtgtcaa |
101 |
Q |
| |
|
||||||| |||||||||||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
5935934 |
ttatgcagatatcgaatcataacatcatttgccttggcattatccaccgttatcgttaatatcttaccatacaacccccaatccctcaaataagtgtcaa |
5935835 |
T |
|
| Q |
102 |
catatttacccaacatgtctcccgtgtgacccgtgatttggcaaaagttgatgattttcttgtgtagcttcaattcatgatcaacaaaatgaacggtcaa |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| | || |
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|
| T |
5935834 |
catatttacccaacatgtctcccgtgtgacccatgatttggcaaaagttgatgattttcttgtgcagcttcaattcacgatcaacaaaatgaacgatgaa |
5935735 |
T |
|
| Q |
202 |
actcatgtaatttaagttttgatttgatgtccat |
235 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
5935734 |
actcatgtaatttaagttttgatttgatgtccat |
5935701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 2 - 228
Target Start/End: Original strand, 4316536 - 4316753
Alignment:
| Q |
2 |
ttatgcaaatatcgaatcatcacatcatttgccttggcattatccaccgtcaccgttaatatcttaccatacaatccccaatccctcaaataagtgtcaa |
101 |
Q |
| |
|
|||||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
4316536 |
ttatgcaaatattgaatcataacatcatttgccttggcattatccaccgttaccgttaatatcttaccatacaacccccaatccctcaaataagtgtcaa |
4316635 |
T |
|
| Q |
102 |
catatttacccaacatgtctcccgtgtgacccgtgatttggcaaaagttgatgattttcttgtgtagcttcaattcatgatcaacaaaatgaacggtcaa |
201 |
Q |
| |
|
|||||||||||||||||||| || |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |
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|
| T |
4316636 |
catatttacccaacatgtct---------cctgtgatttggcaaaagttgatgattttcttgtgcagcttcaattcacgatcaacaaaatgaacggtcaa |
4316726 |
T |
|
| Q |
202 |
actcatgtaatttaagttttgatttga |
228 |
Q |
| |
|
||||||||||||||||||||||||||| |
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| T |
4316727 |
actcatgtaatttaagttttgatttga |
4316753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 2 - 235
Target Start/End: Complemental strand, 16046138 - 16045905
Alignment:
| Q |
2 |
ttatgcaaatatcgaatcatcacatcatttgccttggcattatccaccgtcaccgttaatatcttaccatacaatccccaatccctcaaataagtgtcaa |
101 |
Q |
| |
|
||||||| |||||||||||| |||||||||| |||||||||| ||||||| ||||||||||||||||||||||| || |||||||||||||||||||||| |
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|
| T |
16046138 |
ttatgcagatatcgaatcataacatcatttgtcttggcattacccaccgttaccgttaatatcttaccatacaaccctcaatccctcaaataagtgtcaa |
16046039 |
T |
|
| Q |
102 |
catatttacccaacatgtctcccgtgtgacccgtgatttggcaaaagttgatgattttcttgtgtagcttcaattcatgatcaacaaaatgaacggtcaa |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| ||||| |||||||||||||||| |
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|
| T |
16046038 |
catatttacccaacatgtctcccgtgtgacttgtgatttggcaaaagttgatgattttcttgtgcagcttcaattcacgatcagcaaaatgaacggtcaa |
16045939 |
T |
|
| Q |
202 |
actcatgtaatttaagttttgatttgatgtccat |
235 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
16045938 |
actcatgtaatttaagttttgatttgatgtccat |
16045905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 11 - 221
Target Start/End: Complemental strand, 10143060 - 10142850
Alignment:
| Q |
11 |
tatcgaatcatcacatcatttgccttggcattatccaccgtcaccgttaatatcttaccatacaatccccaatccctcaaataagtgtcaacatatttac |
110 |
Q |
| |
|
||||||||||| || ||||||| |||| |||| |||||||| |||||||| || ||||| | ||| || |||| ||| ||||| |||||||||||||||| |
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| T |
10143060 |
tatcgaatcataacttcatttgacttgacattgtccaccgttaccgttaagattttaccgttcaaccctcaattccttaaatatgtgtcaacatatttac |
10142961 |
T |
|
| Q |
111 |
ccaacatgtctcccgtgtgacccgtgatttggcaaaagttgatgattttcttgtgtagcttcaattcatgatcaacaaaatgaacggtcaaactcatgta |
210 |
Q |
| |
|
||||||| ||| | ||||||||| ||||||| ||||||||||| ||||||| ||| || ||||| ||| || |||||||||||| ||| |||||| || |
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|
| T |
10142960 |
ccaacatatcttcggtgtgacccatgatttgacaaaagttgataattttctcgtgcagtttcaactcaccattaacaaaatgaacaatcagactcatata |
10142861 |
T |
|
| Q |
211 |
atttaagtttt |
221 |
Q |
| |
|
| |||| |||| |
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|
| T |
10142860 |
acttaaatttt |
10142850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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