View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11045_low_3 (Length: 494)

Name: NF11045_low_3
Description: NF11045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11045_low_3
NF11045_low_3
[»] chr3 (2 HSPs)
chr3 (4-480)||(1583250-1583728)
chr3 (4-36)||(8039836-8039868)
[»] chr1 (3 HSPs)
chr1 (4-38)||(48148038-48148072)
chr1 (1-38)||(16927183-16927220)
chr1 (4-38)||(52903273-52903307)
[»] scaffold0022 (1 HSPs)
scaffold0022 (1-38)||(90867-90904)
[»] chr8 (2 HSPs)
chr8 (3-34)||(14134727-14134758)
chr8 (1-38)||(12606827-12606864)
[»] chr7 (3 HSPs)
chr7 (4-34)||(39138472-39138502)
chr7 (1-34)||(640141-640174)
chr7 (1-34)||(5835275-5835308)
[»] chr2 (3 HSPs)
chr2 (4-38)||(34691806-34691840)
chr2 (4-38)||(34714218-34714252)
chr2 (4-37)||(35056893-35056926)
[»] chr6 (1 HSPs)
chr6 (1-38)||(26314632-26314669)
[»] chr5 (2 HSPs)
chr5 (1-38)||(12927678-12927715)
chr5 (4-36)||(6035508-6035540)


Alignment Details
Target: chr3 (Bit Score: 398; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 4 - 480
Target Start/End: Original strand, 1583250 - 1583728
Alignment:
Q  4 gacaccgacatatataattacactgaattatatgannnnnnnaaataattatcgatatcaacctgttactgtctatgttgtgtctaatatccatgtcagt 103  Q
    |||| ||||| ||||| ||| ||||||||||||||       |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  1583250 gacatcgacacatatagttatactgaattatatgatttttttaaataattatcgatatcaacctgttaatgtctatgttgtgtctaatatccatgtcagt 1583349  T
Q  104 attcgtgtttcatagcaattaagcaagttttttaatc-atccatgtagtaaaagtcaggactctgaaaattggac-ccccatatcgaaaagcattatgaa 201  Q
    |||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| ||||||| ||||||||||||||||    
T  1583350 attcgtgttttatagcaattaagcaagttttttaatccatccatgtagtaaaagtcagtactctgaaaattggacaccccataccgaaaagcattatgaa 1583449  T
Q  202 aagagggatttgtgcaagtaaatctcttgatattagtataataatttgagcaattgtcctcttctaacatggaccaaagcatattatattgaatcactaa 301  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  1583450 aagagggatttgtgcaagtaaatctcttgatattagtataataatttgagcaattgtcctcttccaacatggaccaaagcatattatattgaatcactaa 1583549  T
Q  302 acatagaccataatttacccgcaaaaggtatccacatgaatcaaaataaaggtattagtggagtattcctaggattttcaaatctttgtccaaatctact 401  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  1583550 acatagaccataatttacccgcaaaaggtatccacatgaatcaaaataaaggtattagtggagtattcctaggattttcaaacctttgtccaaatctact 1583649  T
Q  402 ttgtttcattcactttttgataattaaacaactggtgtctagggtatacaaataacatgttagatcgggttgtatgtga 480  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  1583650 ttgtttcattcactttttgataattaaacaactggtgtctagggtatacaaataacatgttagatcgggttgcatgtga 1583728  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 4 - 36
Target Start/End: Original strand, 8039836 - 8039868
Alignment:
Q  4 gacaccgacatatataattacactgaattatat 36  Q
    |||||||||| ||||||||||||||||||||||    
T  8039836 gacaccgacacatataattacactgaattatat 8039868  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 4 - 38
Target Start/End: Original strand, 48148038 - 48148072
Alignment:
Q  4 gacaccgacatatataattacactgaattatatga 38  Q
    |||||||||||||||||||||||||||||||||||    
T  48148038 gacaccgacatatataattacactgaattatatga 48148072  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 16927183 - 16927220
Alignment:
Q  1 tctgacaccgacatatataattacactgaattatatga 38  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  16927183 tctgacaccaacatatataattacactgaattatatga 16927220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 4 - 38
Target Start/End: Complemental strand, 52903307 - 52903273
Alignment:
Q  4 gacaccgacatatataattacactgaattatatga 38  Q
    |||||||||| ||||||||||||||||||||||||    
T  52903307 gacaccgacacatataattacactgaattatatga 52903273  T

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Target: scaffold0022 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 90904 - 90867
Alignment:
Q  1 tctgacaccgacatatataattacactgaattatatga 38  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  90904 tctgacatcgacatatataattacactgaattatatga 90867  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 3 - 34
Target Start/End: Complemental strand, 14134758 - 14134727
Alignment:
Q  3 tgacaccgacatatataattacactgaattat 34  Q
    ||||||||||||||||||||||||||||||||    
T  14134758 tgacaccgacatatataattacactgaattat 14134727  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 12606827 - 12606864
Alignment:
Q  1 tctgacaccgacatatataattacactgaattatatga 38  Q
    ||||||||||||| ||||||||||| ||||||||||||    
T  12606827 tctgacaccgacacatataattacattgaattatatga 12606864  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 4 - 34
Target Start/End: Complemental strand, 39138502 - 39138472
Alignment:
Q  4 gacaccgacatatataattacactgaattat 34  Q
    |||||||||||||||||||||||||||||||    
T  39138502 gacaccgacatatataattacactgaattat 39138472  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 640174 - 640141
Alignment:
Q  1 tctgacaccgacatatataattacactgaattat 34  Q
    ||||||||||||| ||||||||||||||||||||    
T  640174 tctgacaccgacacatataattacactgaattat 640141  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 5835308 - 5835275
Alignment:
Q  1 tctgacaccgacatatataattacactgaattat 34  Q
    ||||||||||||| ||||||||||||||||||||    
T  5835308 tctgacaccgacacatataattacactgaattat 5835275  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 4 - 38
Target Start/End: Original strand, 34691806 - 34691840
Alignment:
Q  4 gacaccgacatatataattacactgaattatatga 38  Q
    |||||||||| ||||||||||||||||||||||||    
T  34691806 gacaccgacacatataattacactgaattatatga 34691840  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 4 - 38
Target Start/End: Original strand, 34714218 - 34714252
Alignment:
Q  4 gacaccgacatatataattacactgaattatatga 38  Q
    |||||||||| ||||||||||||||||||||||||    
T  34714218 gacaccgacacatataattacactgaattatatga 34714252  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 4 - 37
Target Start/End: Complemental strand, 35056926 - 35056893
Alignment:
Q  4 gacaccgacatatataattacactgaattatatg 37  Q
    |||||||||| |||||||||||||||||||||||    
T  35056926 gacaccgacacatataattacactgaattatatg 35056893  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 26314632 - 26314669
Alignment:
Q  1 tctgacaccgacatatataattacactgaattatatga 38  Q
    |||||| |||||||||||||||||| ||||||||||||    
T  26314632 tctgaccccgacatatataattacattgaattatatga 26314669  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 12927715 - 12927678
Alignment:
Q  1 tctgacaccgacatatataattacactgaattatatga 38  Q
    |||||||| |||||||||||||||||| ||||||||||    
T  12927715 tctgacactgacatatataattacactaaattatatga 12927678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 4 - 36
Target Start/End: Complemental strand, 6035540 - 6035508
Alignment:
Q  4 gacaccgacatatataattacactgaattatat 36  Q
    |||||||||| ||||||||||||||||||||||    
T  6035540 gacaccgacaaatataattacactgaattatat 6035508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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