View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11045_low_4 (Length: 453)
Name: NF11045_low_4
Description: NF11045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11045_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 359; Significance: 0; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 1 - 441
Target Start/End: Complemental strand, 41804316 - 41803878
Alignment:
| Q |
1 |
gctctttatattgtgcgtaaagaaattggtattgaatgtagaaatccttaataaattcagcaagtggttccctcttcaaaacttctgccggggtgccatc |
100 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
41804316 |
gctcttcatattgtgcgtaaagaaattggtattgaatgtagaaatccttaataaattcagcaagtggttccctcttcaaaacttctgtcggggtgccatc |
41804217 |
T |
|
| Q |
101 |
ctcgttaaggtcgtgatcattaacaaataagtttgattatcctttttactttgtcttcaatttctgtagnnnnnnnnnnnnngtccaaatcatttgttcg |
200 |
Q |
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| T |
41804216 |
ctcgttaaggtcgtgatcattaataagtaagtttgattatcctttttact--gtcttcaatttctgtagaaaaagtaaaaaagtccaaatcatttgttcg |
41804119 |
T |
|
| Q |
201 |
agctatcataaggtgatatacaaaaatcatagcatattttgcatcacgagcttccatcatatgacaattcagaagtcatggtgcatagagattgtacctg |
300 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |
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| T |
41804118 |
agctaccataaggtgatatacaaaaatcatagcatattttgcatcgcgagcttccatcatatcacaattcagaagtcatggtacatagagattgtacctg |
41804019 |
T |
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| Q |
301 |
ctttagctccctggagctgcttttctttatcatacttttcagtatcttcgagcttcttcatgataagattgataacagatagttccttttctctttcttt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41804018 |
ctttagctccctggagctgcttttctttatcatacttttcagtatcttcgagcttcttcatgataagattgataacagatagttccttttctctttcttt |
41803919 |
T |
|
| Q |
401 |
ggactccatttcaagttctgaaacttggttccgcggcccta |
441 |
Q |
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| T |
41803918 |
ggactccatttcaagttctgaaacttggttccgcggcccta |
41803878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 11 - 169
Target Start/End: Complemental strand, 41795898 - 41795744
Alignment:
| Q |
11 |
ttgtgcgtaaagaaattggtattgaatgtagaaatccttaataaattcagcaagtggttccctcttcaaaacttctgccggggtgccatcctcgttaagg |
110 |
Q |
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| T |
41795898 |
ttgtgtgtaaatcaattggtattgattgtggatatcctcaatcaattcagcaagtggttccctcttcaaaagttctgctggggtaccatcttcttcaagg |
41795799 |
T |
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| Q |
111 |
tcgtgatcattaacaaataagtttgattatcctttttactttgtcttcaatttctgtag |
169 |
Q |
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| T |
41795798 |
ttgtcatcttt----aataagtttcaatatccttttgactttgtcttcaatttctgtag |
41795744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 370 - 429
Target Start/End: Complemental strand, 41810603 - 41810544
Alignment:
| Q |
370 |
tgataacagatagttccttttctctttctttggactccatttcaagttctgaaacttggt |
429 |
Q |
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| T |
41810603 |
tgatagcagatagttcctcttctctttctttggacttcatttcaagttctgaaatttggt |
41810544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 370 - 430
Target Start/End: Complemental strand, 41796961 - 41796901
Alignment:
| Q |
370 |
tgataacagatagttccttttctctttctttggactccatttcaagttctgaaacttggtt |
430 |
Q |
| |
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| T |
41796961 |
tgatagcagatagctcctcttctctttctttggacttcatttcaagttctgaaatttggtt |
41796901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 285 - 332
Target Start/End: Complemental strand, 41795615 - 41795568
Alignment:
| Q |
285 |
atagagattgtacctgctttagctccctggagctgcttttctttatca |
332 |
Q |
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| T |
41795615 |
atagagattgtacctgttttagctccctggagctgctcttctttatca |
41795568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 29 - 164
Target Start/End: Complemental strand, 37700920 - 37700790
Alignment:
| Q |
29 |
gtattgaatgtagaaatccttaataaattcagcaagtggttccctcttcaaaacttctgccggggtgccatcctcgttaaggtcgtgatcattaacaaat |
128 |
Q |
| |
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| T |
37700920 |
gtattgattgtggaaatcctcaataa-taaagcaagtggttccctcttcaaaatttctgctggggtaccatcgtcttcaaggttgtcatcttt----aat |
37700826 |
T |
|
| Q |
129 |
aagtttgattatcctttttactttgtcttcaatttc |
164 |
Q |
| |
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|||||| | ||| ||||| ||||||||||||||||| |
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| T |
37700825 |
aagtttcaatattcttttcactttgtcttcaatttc |
37700790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 286 - 332
Target Start/End: Complemental strand, 41803319 - 41803273
Alignment:
| Q |
286 |
tagagattgtacctgctttagctccctggagctgcttttctttatca |
332 |
Q |
| |
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|||||||||||||| |||| |||||||||||||||||||||||||| |
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| T |
41803319 |
tagagattgtaccttttttacctccctggagctgcttttctttatca |
41803273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 286 - 332
Target Start/End: Complemental strand, 41810301 - 41810255
Alignment:
| Q |
286 |
tagagattgtacctgctttagctccctggagctgcttttctttatca |
332 |
Q |
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|||||||| |||||| |||||||||||| |||||||||||||||||| |
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| T |
41810301 |
tagagattatacctgttttagctccctgaagctgcttttctttatca |
41810255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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