View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11045_low_5 (Length: 436)
Name: NF11045_low_5
Description: NF11045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11045_low_5 |
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| [»] chr1 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 4 - 375
Target Start/End: Complemental strand, 36518539 - 36518168
Alignment:
| Q |
4 |
gccggatgccatgaccggggtaattatgagaacatacaaaagcgccaaaacaaggcggaacacctagaggccaaaccaacccaagggtcatgccaaaccc |
103 |
Q |
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| T |
36518539 |
gccggatgtcataaccggggtagttatgagaacatacaaaggcgccgaaacaaggcggaacacctagaggccaaaccaacccaaaggtcatgccaaaccc |
36518440 |
T |
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| Q |
104 |
acctatacaaaggaaatgtgcctacaccacatcactaccctgctaaaacagacaacaaccaatacagtaggaacataactagcctaagcttgatataacc |
203 |
Q |
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| T |
36518439 |
acctatacaaaggaaatgtgcctacaccacatcactatcctgctaaaacagacaacaaccaatacagtaggaacataactagcctaagcttgatataacc |
36518340 |
T |
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| Q |
204 |
aaactaactaccccaaaaacagaaccactgcacaaacagcagccgaaccctcacaccagaaaacatgaaacaccagtaagtttggattattaaccaatcg |
303 |
Q |
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| T |
36518339 |
aaactaactaccccaaaaacagaaccactgcacaaacagcagccgaaccctcacaccagaaaacatgaaacaccagtaagtttggattattaaccaattg |
36518240 |
T |
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| Q |
304 |
caaaaacgaattctcaacaaatgcattaaaccatgtctccaccaatccatctcaactcgaaataaaatttgg |
375 |
Q |
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| T |
36518239 |
caaaaacgaattctcaacaaatgcattaaaccatgtctccaccaatccatctcaactccaaataaaatttgg |
36518168 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 86; Significance: 6e-41; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 51 - 221
Target Start/End: Original strand, 10727603 - 10727777
Alignment:
| Q |
51 |
aaacaaggcggaacacctagaggccaaaccaa---cccaagggtcatgccaaacccacctatacaaaggaaatgtgcctacaccacatcactaccctgct |
147 |
Q |
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| T |
10727603 |
aaacaaggcggaacacctagaggccaaaaacataccccaaaggtcaagcctaacccacctatacaaaggaaatgtgcctacaccacaacactaccctgcc |
10727702 |
T |
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| Q |
148 |
aaaacagaca-acaaccaatacagtaggaacataactagcctaagcttgatat-aaccaaactaactaccccaaaa |
221 |
Q |
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| T |
10727703 |
aaaacagacagacagccaa-acaaaaggaacataactagcctaagcttgctataaaccaaactaactagcccaaaa |
10727777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 220 - 283
Target Start/End: Original strand, 10727828 - 10727891
Alignment:
| Q |
220 |
aaacagaaccactgcacaaacagcagccgaaccctcacaccagaaaacatgaaacaccagtaag |
283 |
Q |
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| T |
10727828 |
aaacagaaccgctgcacaaacagtagccgaaccctcacaccagaagacagaaaacaccagtaag |
10727891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 81; Significance: 6e-38; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 320 - 436
Target Start/End: Original strand, 47649145 - 47649261
Alignment:
| Q |
320 |
acaaatgcattaaaccatgtctccaccaatccatctcaactcgaaataaaatttggacaaaattgtatgctaaaagtaaagaaaaattacttacaatttc |
419 |
Q |
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|||||||||| || | ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| |
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| T |
47649145 |
acaaatgcatcaagtcgtgtctccacgaatccatctcaactcgaaataaaatttggacaaaattgtatgctaaatgtcaagaaaaattacttacaatttc |
47649244 |
T |
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| Q |
420 |
tctcaagtcgtgttatt |
436 |
Q |
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| T |
47649245 |
tctgaagtggtgttatt |
47649261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 339 - 436
Target Start/End: Original strand, 30753272 - 30753369
Alignment:
| Q |
339 |
tctccaccaatccatctcaactcgaaataaaatttggacaaaattgtatgctaaaagtaaagaaaaattacttacaatttctctcaagtcgtgttatt |
436 |
Q |
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| T |
30753272 |
tctccatcaagccatctcaattcaaaataaaatttagacaaaattgtattctaaaagtcaagaaaaattacttccaatttctctgaagtcgtgttatt |
30753369 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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