View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11045_low_7 (Length: 394)
Name: NF11045_low_7
Description: NF11045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11045_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 381; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 1 - 381
Target Start/End: Complemental strand, 11906248 - 11905868
Alignment:
| Q |
1 |
acgtcatccattttgaagtatcgaggctttagataaatatgtaagaaatgagtttatttgacatgttgattggtgtaaaagatatatgaaagaaatatag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11906248 |
acgtcatccattttgaagtatcgaggctttagataaatatgtaagaaatgagtttatttgacatgttgattggtgtaaaagatatatgaaagaaatatag |
11906149 |
T |
|
| Q |
101 |
aggaaataaatgttgattattttgaaagtatgaaattaccattgaatcataaaaattccattaaaattaataaattttagaatgtttttaattaaggaaa |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11906148 |
aggaaataaatgttgattattttgaaagtatgaaattaccattgaatcataaaaattccattaaaattaataaattttagaatgtttttaattaaggaaa |
11906049 |
T |
|
| Q |
201 |
cattatttgaggaactgattggtggctgagtgtatgttttgcagtcatatagaggtgctgagtatatgagtttatatttccatcaattttcattgatatt |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11906048 |
cattatttgaggaactgattggtggctgagtgtatgttttgcagtcatatagaggtgctgagtatatgagtttatatttccatcaattttcattgatatt |
11905949 |
T |
|
| Q |
301 |
ttggttccagaggctaggactggttggttgttttctattcactcgaaatagctattatcttagttttaggtgtgtttggtg |
381 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11905948 |
ttggttccagaggctaggactggttggttgttttctattcactcgaaatagctattatcttagttttaggtgtgtttggtg |
11905868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 26716303 - 26716275
Alignment:
| Q |
1 |
acgtcatccattttgaagtatcgaggctt |
29 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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|
| T |
26716303 |
acgtcatccattttgaagtatcgaggctt |
26716275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 26986043 - 26986015
Alignment:
| Q |
1 |
acgtcatccattttgaagtatcgaggctt |
29 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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|
| T |
26986043 |
acgtcatccattttgaagtatcgaggctt |
26986015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 169
Target Start/End: Complemental strand, 52027727 - 52027661
Alignment:
| Q |
103 |
gaaataaatgttgattattttgaaagtatgaaattaccattgaatcataaaaattccattaaaatta |
169 |
Q |
| |
|
||||||| |||||||||||||||||||| ||| || |||||| ||||||||||||| ||||||| |
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|
| T |
52027727 |
gaaataagtgttgattattttgaaagtaccaaaatattcttgaataataaaaattccatcaaaatta |
52027661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 22289809 - 22289837
Alignment:
| Q |
1 |
acgtcatccattttgaagtatcgaggctt |
29 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
22289809 |
acgtcatccattttgaagtatcgaggctt |
22289837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 47642047 - 47642019
Alignment:
| Q |
1 |
acgtcatccattttgaagtatcgaggctt |
29 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
47642047 |
acgtcatccattttgaagtatcgaggctt |
47642019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 32759403 - 32759375
Alignment:
| Q |
1 |
acgtcatccattttgaagtatcgaggctt |
29 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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|
| T |
32759403 |
acgtcatccattttgaagtatcgaggctt |
32759375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 4355355 - 4355327
Alignment:
| Q |
1 |
acgtcatccattttgaagtatcgaggctt |
29 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
4355355 |
acgtcatccattttgaagtatcgaggctt |
4355327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 10822432 - 10822404
Alignment:
| Q |
1 |
acgtcatccattttgaagtatcgaggctt |
29 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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|
| T |
10822432 |
acgtcatccattttgaagtatcgaggctt |
10822404 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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