View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11045_low_8 (Length: 388)
Name: NF11045_low_8
Description: NF11045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11045_low_8 |
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| [»] scaffold0638 (1 HSPs) |
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| [»] scaffold0451 (1 HSPs) |
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| [»] scaffold0022 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 365
Target Start/End: Original strand, 38263091 - 38263439
Alignment:
| Q |
1 |
atatagatgttagaggacgtgattttcagctcataccatttgggtctggtagaaggggttgtcctggattgcaattaggcctaactgtgattcgtttggt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38263091 |
atatagatgttagaggacgtgattttcagctcataccatttgggtctggtagaaggggttgtcctggattgcaattaggcctaactgtgattcgtttggt |
38263190 |
T |
|
| Q |
101 |
ggtggctcaacttgtgcattgctttgattggaaattgcctaatcatatgttaccaagtgatttggatatgacagaggagtttggacttactatgcctagg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38263191 |
ggtggctcaacttgtgcattgctttgattggaaattgcctaatcatatgttaccaagtgatttggatatgacagaggagtttggacttactatgcctagg |
38263290 |
T |
|
| Q |
201 |
gcaaatcatttaactgccattcccacttatcgcctttctagttgacattgatatatgtgtttgaataagacttgtnnnnnnntattctccttttcatagt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
38263291 |
gcaaatcatttaactgccattcccacttatcgcctttctggttgatattgatatatgtgtttgaataagacttgtaaaaaaatattctccttttcata-- |
38263388 |
T |
|
| Q |
301 |
ttgaaattatgtttctatcgataaaagaatagtttttctatacaatggtatatgctttgaaatct |
365 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
38263389 |
--------------ctatcgataaaagaatagtttttctatataatggtatatgctttgaaatct |
38263439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 38260120 - 38260356
Alignment:
| Q |
1 |
atatagatgttagaggacgtgattttcagctcataccatttgggtctggtagaaggggttgtcctggattgcaattaggcctaactgtgattcgtttggt |
100 |
Q |
| |
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|||||||||||| |||||||||||||||||||||||||||||| || |||||||| |||||||||||||| |||||||| |||||||||||||||||||| |
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| T |
38260120 |
atatagatgttaaaggacgtgattttcagctcataccatttggctcaggtagaagaggttgtcctggattacaattaggtctaactgtgattcgtttggt |
38260219 |
T |
|
| Q |
101 |
ggtggctcaacttgtgcattgctttgattggaaattgcctaatcatatgttaccaagtgatttggatatgacagaggagtttggacttactatgcctagg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |
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| T |
38260220 |
ggtggctcaacttgtgcattgctttgattggaaattgcctaatcatatgttaccaagtgatttggatatgacagaggattttggtcttactatgcctaga |
38260319 |
T |
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| Q |
201 |
gcaaatcatttaactgccattcccacttatcgccttt |
237 |
Q |
| |
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|| ||| || ||| |||||| || ||||||| |||| |
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| T |
38260320 |
gccaataatctaattgccatccctgcttatcgtcttt |
38260356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 109; Significance: 1e-54; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 3 - 211
Target Start/End: Original strand, 27413469 - 27413677
Alignment:
| Q |
3 |
atagatgttagaggacgtgattttcagctcataccatttgggtctggtagaaggggttgtcctggattgcaattaggcctaactgtgattcgtttggtgg |
102 |
Q |
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||||||||| |||||| ||| |||||||| ||||||||||| ||||| ||||||||||||||||||||||| || || |||||| || | |||||||||| |
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| T |
27413469 |
atagatgttggaggacatgactttcagcttataccatttggctctggaagaaggggttgtcctggattgcatttgggtctaactatggtgcgtttggtgg |
27413568 |
T |
|
| Q |
103 |
tggctcaacttgtgcattgctttgattggaaattgcctaatcatatgttaccaagtgatttggatatgacagaggagtttggacttactatgcctagggc |
202 |
Q |
| |
|
|||| ||| |||||||||||||||||| |||||| |||||| |||||||||||||||||||||| ||||| |||| ||||| ||||||||||||| || |
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| T |
27413569 |
tggcccaaattgtgcattgctttgatttgaaattacctaatgatatgttaccaagtgatttggacatgactgaggcatttggtattactatgcctagagc |
27413668 |
T |
|
| Q |
203 |
aaatcattt |
211 |
Q |
| |
|
|||||||| |
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| T |
27413669 |
caatcattt |
27413677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0638 (Bit Score: 103; Significance: 4e-51; HSPs: 1)
Name: scaffold0638
Description:
Target: scaffold0638; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 3 - 209
Target Start/End: Original strand, 6914 - 7120
Alignment:
| Q |
3 |
atagatgttagaggacgtgattttcagctcataccatttgggtctggtagaaggggttgtcctggattgcaattaggcctaactgtgattcgtttggtgg |
102 |
Q |
| |
|
||||||||| |||||| ||||||||| || ||||||||| | ||||| |||||||| ||||||||||||||||| || |||||| || | |||||||||| |
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| T |
6914 |
atagatgttggaggacatgattttcaacttataccatttagctctggaagaaggggatgtcctggattgcaattgggtctaactatggtgcgtttggtgg |
7013 |
T |
|
| Q |
103 |
tggctcaacttgtgcattgctttgattggaaattgcctaatcatatgttaccaagtgatttggatatgacagaggagtttggacttactatgcctagggc |
202 |
Q |
| |
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| || |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |||||| ||||| ||||||||| ||| || |
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| T |
7014 |
tagcccaacttgtgcattgctttgattttaaattgcctaatcatatgttaccaagtgatttggacatggcagaggcatttggtgttactatgcgtagagc |
7113 |
T |
|
| Q |
203 |
aaatcat |
209 |
Q |
| |
|
|||||| |
|
|
| T |
7114 |
caatcat |
7120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0451 (Bit Score: 86; Significance: 5e-41; HSPs: 1)
Name: scaffold0451
Description:
Target: scaffold0451; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 24 - 209
Target Start/End: Complemental strand, 6946 - 6761
Alignment:
| Q |
24 |
tttcagctcataccatttgggtctggtagaaggggttgtcctggattgcaattaggcctaactgtgattcgtttggtggtggctcaacttgtgcattgct |
123 |
Q |
| |
|
||||| || ||||||||||| ||||| |||||||| |||||||||||||||||||| |||||| || | ||||||| ||| || |||||||||||||||| |
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| T |
6946 |
tttcatcttataccatttggctctggaagaaggggatgtcctggattgcaattaggtctaactatggtgcgtttggcggtagcccaacttgtgcattgct |
6847 |
T |
|
| Q |
124 |
ttgattggaaattgcctaatcatatgttaccaagtgatttggatatgacagaggagtttggacttactatgcctagggcaaatcat |
209 |
Q |
| |
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|||||| |||||||||||| |||||||||||||||| ||||| |||||||| ||||| ||||||||||||| || |||||| |
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| T |
6846 |
ttgattttaaattgcctaatgatatgttaccaagtgacttggacatgacagaatcatttggtgttactatgcctagagccaatcat |
6761 |
T |
|
Back To:
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Target: scaffold0022 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0022
Description:
Target: scaffold0022; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 68
Target Start/End: Complemental strand, 91238 - 91184
Alignment:
| Q |
14 |
aggacgtgattttcagctcataccatttgggtctggtagaaggggttgtcctgga |
68 |
Q |
| |
|
||||| |||||||||| | ||||| ||||| ||||||||||||||||||||||| |
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|
| T |
91238 |
aggacatgattttcagttgataccttttggtgctggtagaaggggttgtcctgga |
91184 |
T |
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