View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11046_low_1 (Length: 382)

Name: NF11046_low_1
Description: NF11046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11046_low_1
NF11046_low_1
[»] chr3 (18 HSPs)
chr3 (9-273)||(50650350-50650614)
chr3 (9-272)||(12938397-12938660)
chr3 (23-270)||(31658792-31659038)
chr3 (60-272)||(29833271-29833483)
chr3 (53-244)||(33216657-33216848)
chr3 (183-272)||(53282148-53282237)
chr3 (183-272)||(36950291-36950380)
chr3 (50-127)||(39833230-39833307)
chr3 (184-274)||(20104175-20104265)
chr3 (187-272)||(29703673-29703758)
chr3 (224-272)||(50360241-50360289)
chr3 (23-127)||(5232946-5233050)
chr3 (56-127)||(29703541-29703612)
chr3 (56-127)||(36950163-36950234)
chr3 (184-274)||(5232799-5232889)
chr3 (186-272)||(39833366-39833452)
chr3 (56-127)||(53282294-53282365)
chr3 (276-320)||(14148426-14148470)
[»] chr4 (15 HSPs)
chr4 (9-272)||(27292942-27293205)
chr4 (9-272)||(4919011-4919273)
chr4 (23-272)||(42976327-42976575)
chr4 (276-364)||(24474394-24474482)
chr4 (180-272)||(24228273-24228365)
chr4 (50-117)||(45989609-45989676)
chr4 (50-127)||(20133410-20133487)
chr4 (24-117)||(42069019-42069112)
chr4 (23-127)||(55919359-55919463)
chr4 (183-277)||(15531344-15531438)
chr4 (50-117)||(47031458-47031525)
chr4 (23-127)||(28679508-28679612)
chr4 (56-127)||(15531216-15531287)
chr4 (186-272)||(20133265-20133351)
chr4 (190-272)||(55919526-55919608)
[»] chr2 (16 HSPs)
chr2 (9-274)||(14096250-14096515)
chr2 (168-272)||(18977203-18977307)
chr2 (23-140)||(18977083-18977200)
chr2 (23-127)||(14810087-14810191)
chr2 (23-127)||(15330735-15330839)
chr2 (23-127)||(37261669-37261773)
chr2 (183-272)||(7089079-7089168)
chr2 (23-127)||(16429864-16429968)
chr2 (23-127)||(17690604-17690708)
chr2 (183-267)||(33755203-33755287)
chr2 (184-272)||(37078802-37078890)
chr2 (23-127)||(37078947-37079051)
chr2 (276-350)||(16592594-16592668)
chr2 (186-272)||(17690459-17690545)
chr2 (74-127)||(7089225-7089278)
chr2 (186-267)||(16429724-16429805)
[»] chr1 (8 HSPs)
chr1 (10-273)||(27286159-27286422)
chr1 (9-272)||(52385772-52386035)
chr1 (50-271)||(39241555-39241773)
chr1 (23-127)||(12981521-12981625)
chr1 (23-127)||(45348240-45348344)
chr1 (51-117)||(45325635-45325701)
chr1 (186-274)||(12981374-12981462)
chr1 (201-272)||(49409760-49409831)
[»] chr7 (12 HSPs)
chr7 (9-272)||(19436668-19436931)
chr7 (9-272)||(29833903-29834166)
chr7 (99-269)||(29258386-29258556)
chr7 (23-127)||(45972423-45972527)
chr7 (50-117)||(6442636-6442703)
chr7 (50-116)||(34094118-34094184)
chr7 (50-127)||(29243380-29243455)
chr7 (186-275)||(45972275-45972364)
chr7 (23-127)||(47327942-47328046)
chr7 (184-273)||(47327796-47327885)
chr7 (184-272)||(29243235-29243323)
chr7 (203-272)||(34093973-34094042)
[»] chr5 (9 HSPs)
chr5 (9-272)||(30624860-30625123)
chr5 (9-273)||(41413401-41413665)
chr5 (9-274)||(1828406-1828671)
chr5 (9-273)||(40313872-40314136)
chr5 (53-272)||(31482071-31482290)
chr5 (23-127)||(24788296-24788400)
chr5 (183-272)||(39884550-39884639)
chr5 (186-273)||(24788459-24788546)
chr5 (60-127)||(39884696-39884763)
[»] chr6 (6 HSPs)
chr6 (9-267)||(12938643-12938901)
chr6 (9-247)||(33694802-33695039)
chr6 (50-229)||(28138039-28138217)
chr6 (187-270)||(12466398-12466481)
chr6 (93-173)||(14532051-14532131)
chr6 (278-319)||(20891400-20891441)
[»] chr8 (8 HSPs)
chr8 (53-272)||(13802682-13802901)
chr8 (53-177)||(23613574-23613699)
chr8 (183-272)||(3879600-3879689)
chr8 (53-174)||(23614215-23614338)
chr8 (23-127)||(531684-531788)
chr8 (50-127)||(30945452-30945527)
chr8 (186-273)||(531538-531625)
chr8 (56-127)||(3879472-3879543)
[»] scaffold0166 (2 HSPs)
scaffold0166 (23-127)||(30679-30783)
scaffold0166 (186-273)||(30842-30929)
[»] scaffold0338 (1 HSPs)
scaffold0338 (276-317)||(18970-19011)


Alignment Details
Target: chr3 (Bit Score: 249; Significance: 1e-138; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 9 - 273
Target Start/End: Original strand, 50650350 - 50650614
Alignment:
Q  9 gagatgaatgagtgataaagaggaaagagaattggaaaaataagaaaaatcatgtgtagagggtgtaccacgataacatagagaccaaacaaatctaacc 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  50650350 gagatgaatgagtgataaagaggaaagagaattggaaaaataagaaaaatcatgtgtagagggtgtaccacaataacatagagaccaaacaaatctaacc 50650449  T
Q  109 gttaagatcttgaaataaacttgtctatggtggaacatatgaaacaagtgatccatattagaatttgtcccaacatctgacgtgtcatgacttgaaatct 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  50650450 gttaagatcttgaaataaacttgtctatggtggaacatatgaaacaagtgatccatattagaatttgtcccaacatctgacgtgtcatggcttgaaatct 50650549  T
Q  209 gattggctgaattaaacgacttcaccgaaaaagtcaattctccgacttcttcatagaagctccca 273  Q
    |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  50650550 gattggctgaattaaacgactttaccgaaaaagtcaattccccgacttcttcatagaagctccca 50650614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 9 - 272
Target Start/End: Complemental strand, 12938660 - 12938397
Alignment:
Q  9 gagatgaatgagtgataaagaggaaagagaattggaaaaataagaaaaatcatgtgtagagggtgtaccacgataacatagagaccaaacaaatctaacc 108  Q
    |||||| ||||||||||||||||| ||||| ||||||  ||||||||||||||||||| |||||||||||| |||||||||| |||||  ||| ||||||    
T  12938660 gagatgcatgagtgataaagaggagagagatttggaattataagaaaaatcatgtgtaaagggtgtaccacaataacatagacaccaagtaaacctaacc 12938561  T
Q  109 gttaagatcttgaaataaacttgtctatggtggaacatatgaaacaagtgatccatattagaatttgtcccaacatctgacgtgtcatgacttgaaatct 208  Q
    ||||||||||||||||||||||||| | ||||||||||||||| |||||||||||||||| ||||||||| |||||||||||||||||| ||||||||||    
T  12938560 gttaagatcttgaaataaacttgtccacggtggaacatatgaagcaagtgatccatattataatttgtcctaacatctgacgtgtcatggcttgaaatct 12938461  T
Q  209 gattggctgaattaaacgacttcaccgaaaaagtcaattctccgacttcttcatagaagctccc 272  Q
    ||||||   | | |||||||||||||||| |||||| ||  |||||||| ||||||||||||||    
T  12938460 gattggtccattcaaacgacttcaccgaagaagtcatttacccgacttcatcatagaagctccc 12938397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 23 - 270
Target Start/End: Original strand, 31658792 - 31659038
Alignment:
Q  23 ataaagaggaaagagaattggaaaaataagaaaaatcatgtgtagagggtgtaccacgataacatagagaccaaacaaatctaaccgttaagatcttgaa 122  Q
    |||||||||| |||||||||  |  | ||||||||||||||||||| |||||||||| ||||||||||||||||  ||||||||||||||||||| | ||    
T  31658792 ataaagaggagagagaattgatattagaagaaaaatcatgtgtagatggtgtaccacaataacatagagaccaagtaaatctaaccgttaagatcataaa 31658891  T
Q  123 ataaacttgtctatggtggaacatatgaaacaagtgatccatattagaatttgtcccaacatctgacgtgtcatgacttgaaatctgattggctgaatta 222  Q
    | ||||||||||||||||| || |||| | |||||||||||||||||||||| | || |||| ||| |||||||  |||||||||||||||| |||||||    
T  31658892 agaaacttgtctatggtgggacttatggagcaagtgatccatattagaatttat-cctacatgtgatgtgtcatctcttgaaatctgattggttgaatta 31658990  T
Q  223 aacgacttcaccgaaaaagtcaattctccgacttcttcatagaagctc 270  Q
    ||||||| ||||||| ||||||||| | | |||| |||||||||||||    
T  31658991 aacgactgcaccgaagaagtcaattgttcaactttttcatagaagctc 31659038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 60 - 272
Target Start/End: Complemental strand, 29833483 - 29833271
Alignment:
Q  60 atgtgtagagggtgtaccacgataacatagagaccaaacaaatctaaccgttaagatcttgaaataaacttgtctatggtggaacatatgaaacaagtga 159  Q
    ||||| ||| |||||||||  ||| |||||| ||||||||||||||||| |||||||| | || ||||  |||||||||||||||||||| | |||||||    
T  29833483 atgtgaagatggtgtaccataataccatagaaaccaaacaaatctaaccattaagatcatcaagtaaatctgtctatggtggaacatatggagcaagtga 29833384  T
Q  160 tccatattagaatttgtcccaacatctgacgtgtcatgacttgaaatctgattggctgaattaaacgacttcaccgaaaaagtcaattctccgacttctt 259  Q
    ||||||||| |||||||||  || ||||||||||||| |||| |||||||||||| | | | ||||||||||||| || |||||| ||  | ||||||||    
T  29833383 tccatattataatttgtccttacttctgacgtgtcatcacttaaaatctgattggttcattcaaacgacttcaccaaagaagtcattttactgacttctt 29833284  T
Q  260 catagaagctccc 272  Q
    | |||||||||||    
T  29833283 cgtagaagctccc 29833271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 53 - 244
Target Start/End: Original strand, 33216657 - 33216848
Alignment:
Q  53 aaaaatcatgtgtagagggtgtaccacgataacatagagaccaaacaaatctaaccgttaagatcttgaaataaacttgtctatggtggaacatatgaaa 152  Q
    |||||| ||| ||||| | |||||||  ||| ||||||| |||||||||||||||| |||||||| |||| ||||  |||||||||||||||||||| |     
T  33216657 aaaaattatgcgtagatgctgtaccataataccatagaggccaaacaaatctaaccattaagatcatgaagtaaatctgtctatggtggaacatatggag 33216756  T
Q  153 caagtgatccatattagaatttgtcccaacatctgacgtgtcatgacttgaaatctgattggctgaattaaacgacttcaccgaaaaagtca 244  Q
    |||||||||||||||| ||||||||   || |  |||||||||| |||| |||||||||||||| | | |||||||||||||||| ||||||    
T  33216757 caagtgatccatattataatttgtcattacttaggacgtgtcatcacttaaaatctgattggctcattcaaacgacttcaccgaagaagtca 33216848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 183 - 272
Target Start/End: Complemental strand, 53282237 - 53282148
Alignment:
Q  183 atctgacgtgtcatgacttgaaatctgattggctgaattaaacgacttcaccgaaaaagtcaattctccgacttcttcatagaagctccc 272  Q
    |||||||||||||| ||||||||||||||||||  | | |||||||||||||||| |||||| || || |||||||||||||||||||||    
T  53282237 atctgacgtgtcatcacttgaaatctgattggcccattcaaacgacttcaccgaagaagtcatttttctgacttcttcatagaagctccc 53282148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 183 - 272
Target Start/End: Original strand, 36950291 - 36950380
Alignment:
Q  183 atctgacgtgtcatgacttgaaatctgattggctgaattaaacgacttcaccgaaaaagtcaattctccgacttcttcatagaagctccc 272  Q
    |||||||||||||| ||||||||||| ||||||  | | ||||||||||||||||||||||  || || |||||||||||||||||||||    
T  36950291 atctgacgtgtcatcacttgaaatctaattggcccattcaaacgacttcaccgaaaaagtcgtttttctgacttcttcatagaagctccc 36950380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 50 - 127
Target Start/End: Original strand, 39833230 - 39833307
Alignment:
Q  50 aagaaaaatcatgtgtagagggtgtaccacgataacatagagaccaaacaaatctaaccgttaagatcttgaaataaa 127  Q
    ||||||||||||||||||| |||||||||| |||||||||||| |||  |||||||||| |||| ||| |||||||||    
T  39833230 aagaaaaatcatgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaaaatcatgaaataaa 39833307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 184 - 274
Target Start/End: Complemental strand, 20104265 - 20104175
Alignment:
Q  184 tctgacgtgtcatgacttgaaatctgattggctgaattaaacgacttcaccgaaaaagtcaattctccgacttcttcatagaagctcccat 274  Q
    ||||||||||||| |||| |||||||||||||  | | |||||| |||||||||||||||| ||  | ||||||||| |||||||||||||    
T  20104265 tctgacgtgtcatcacttaaaatctgattggcctattcaaacgatttcaccgaaaaagtcattttcctgacttcttcgtagaagctcccat 20104175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 187 - 272
Target Start/End: Original strand, 29703673 - 29703758
Alignment:
Q  187 gacgtgtcatgacttgaaatctgattggctgaattaaacgacttcaccgaaaaagtcaattctccgacttcttcatagaagctccc 272  Q
    |||||||||| |||||||||||||||||   | | ||||||||||||||||||||||| || || ||||||| | |||||||||||    
T  29703673 gacgtgtcatcacttgaaatctgattggtccattcaaacgacttcaccgaaaaagtcatttttctgacttctccgtagaagctccc 29703758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 224 - 272
Target Start/End: Original strand, 50360241 - 50360289
Alignment:
Q  224 acgacttcaccgaaaaagtcaattctccgacttcttcatagaagctccc 272  Q
    ||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  50360241 acgacttcaccgaaaaagtcaattccccgacttcttcgtagaagctccc 50360289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 23 - 127
Target Start/End: Complemental strand, 5233050 - 5232946
Alignment:
Q  23 ataaagaggaaagagaattggaaaaataagaaaaatcatgtgtagagggtgtaccacgataacatagagaccaaacaaatctaaccgttaagatcttgaa 122  Q
    ||||| |||| |||||||||| |  | ||||||| ||||||||||| | |||||||| |||||||| ||| |||  |||||||||  |||||||| ||||    
T  5233050 ataaaaaggagagagaattggtactagaagaaaattcatgtgtagatgttgtaccacaataacataaagatcaagtaaatctaactattaagatcatgaa 5232951  T
Q  123 ataaa 127  Q
    |||||    
T  5232950 ataaa 5232946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 56 - 127
Target Start/End: Original strand, 29703541 - 29703612
Alignment:
Q  56 aatcatgtgtagagggtgtaccacgataacatagagaccaaacaaatctaaccgttaagatcttgaaataaa 127  Q
    |||||||||||||  || |||||| ||||||||||||| ||  |||||||||| |||||||| |||||||||    
T  29703541 aatcatgtgtagacagtataccacaataacatagagactaagtaaatctaaccattaagatcatgaaataaa 29703612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 56 - 127
Target Start/End: Original strand, 36950163 - 36950234
Alignment:
Q  56 aatcatgtgtagagggtgtaccacgataacatagagaccaaacaaatctaaccgttaagatcttgaaataaa 127  Q
    |||||||||||||   | |||||| ||||||||||||||||  |||||||||| |||||||| |||||||||    
T  36950163 aatcatgtgtagacaatataccacaataacatagagaccaagtaaatctaaccattaagatcatgaaataaa 36950234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 184 - 274
Target Start/End: Complemental strand, 5232889 - 5232799
Alignment:
Q  184 tctgacgtgtcatgacttgaaatctgattggctgaattaaacgacttcaccgaaaaagtcaattctccgacttcttcatagaagctcccat 274  Q
    ||||||||||||| |||| |||||||||||||  | | | |||||||||||||| |||||| ||  | ||||||||| |||||||| ||||    
T  5232889 tctgacgtgtcatcacttaaaatctgattggcccattcagacgacttcaccgaagaagtcattttcctgacttcttcgtagaagcttccat 5232799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 272
Target Start/End: Original strand, 39833366 - 39833452
Alignment:
Q  186 tgacgtgtcatgacttgaaatctgattggctgaattaaacgacttcaccgaaaaagtcaattctccgacttcttcatagaagctccc 272  Q
    ||||||||||| | || |||||||||||||  | | |||||||||||||||| |||||| ||  | |||||| ||||||||||||||    
T  39833366 tgacgtgtcatcatttaaaatctgattggcccattcaaacgacttcaccgaagaagtcattttcctgacttcatcatagaagctccc 39833452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 56 - 127
Target Start/End: Complemental strand, 53282365 - 53282294
Alignment:
Q  56 aatcatgtgtagagggtgtaccacgataacatagagaccaaacaaatctaaccgttaagatcttgaaataaa 127  Q
    |||||||||||||  || |||||| ||||||||||||| ||  |||||||||| |||||||  |||||||||    
T  53282365 aatcatgtgtagacagtataccacaataacatagagactaagtaaatctaaccattaagataatgaaataaa 53282294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 276 - 320
Target Start/End: Complemental strand, 14148470 - 14148426
Alignment:
Q  276 aatcaattattcgaaagagtttagatgcaacatctccattttctc 320  Q
    |||||||| || |||||||||||||||| |||||| |||||||||    
T  14148470 aatcaattctttgaaagagtttagatgctacatcttcattttctc 14148426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 248; Significance: 1e-137; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 9 - 272
Target Start/End: Complemental strand, 27293205 - 27292942
Alignment:
Q  9 gagatgaatgagtgataaagaggaaagagaattggaaaaataagaaaaatcatgtgtagagggtgtaccacgataacatagagaccaaacaaatctaacc 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  27293205 gagatgaatgagtgataaagaggaaagagaattggaaaaataagaaaaatcatgtgtagagggtgtaccacaataacatagagaccaaacaaatctaacc 27293106  T
Q  109 gttaagatcttgaaataaacttgtctatggtggaacatatgaaacaagtgatccatattagaatttgtcccaacatctgacgtgtcatgacttgaaatct 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||    
T  27293105 gttaagatcttgaaataaacttgtctatggtggaacatatgaaacaagtgatccatattagaatttgtcccaacatatgacgtgtcatggcttgaaatct 27293006  T
Q  209 gattggctgaattaaacgacttcaccgaaaaagtcaattctccgacttcttcatagaagctccc 272  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  27293005 gattggctgaattaaacgacttcaccgaaaaagtcaattccccgacttcttcatagaagctccc 27292942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 9 - 272
Target Start/End: Complemental strand, 4919273 - 4919011
Alignment:
Q  9 gagatgaatgagtgataaagaggaaagagaattggaaaaataagaaaaatcatgtgtagagggtgtaccacgataacatagagaccaaacaaatctaacc 108  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| ||| ||||||||||||||||||||||||    
T  4919273 gagatgaatgagtgataaagaggaaatagaattggaaaaataagaaaaatcatgtgtagagcgtgtaccacaatatcatagagaccaaacaaatctaacc 4919174  T
Q  109 gttaagatcttgaaataaacttgtctatggtggaacatatgaaacaagtgatccatattagaatttgtcccaacatctgacgtgtcatgacttgaaatct 208  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  4919173 attaagatcttgaaataaacttgtctatggtggaacatatgaaacaagtgatccatattagaatttgtcccaacatctgacgtgtcatggcttgaaatct 4919074  T
Q  209 gattggctgaattaaacgacttcaccgaaaaagtcaattctccgacttcttcatagaagctccc 272  Q
    ||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||    
T  4919073 gattggctgaatt-aacgacttcaccgaaaaagtcaattccccgacttcttcatagaagctccc 4919011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 23 - 272
Target Start/End: Complemental strand, 42976575 - 42976327
Alignment:
Q  23 ataaagaggaaagagaattggaaaaataagaaaaatcatgtgtagagggtgtaccacgataacatagagaccaaacaaatctaaccgttaagatcttgaa 122  Q
    |||||||||| |||||||||  |  | ||||||||||||||||||| ||||||||||  |||||||||||||||  ||||||||||||||||||| | ||    
T  42976575 ataaagaggagagagaattgatactagaagaaaaatcatgtgtagatggtgtaccacattaacatagagaccaagtaaatctaaccgttaagatcataaa 42976476  T
Q  123 ataaacttgtctatggtggaacatatgaaacaagtgatccatattagaatttgtcccaacatctgacgtgtcatgacttgaaatctgattggctgaatta 222  Q
    | ||||||||||||||||| || |||| | |||||||||||||||| ||||| |  | |||| |||||||||||  |||||||||||||||| |||||||    
T  42976475 agaaacttgtctatggtgggacttatggagcaagtgatccatattaaaatttat-tctacatgtgacgtgtcatctcttgaaatctgattggttgaatta 42976377  T
Q  223 aacgacttcaccgaaaaagtcaattctccgacttcttcatagaagctccc 272  Q
    ||||||| || |||| ||||||||| ||||||||||||||||||||||||    
T  42976376 aacgactgcatcgaagaagtcaattgtccgacttcttcatagaagctccc 42976327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 276 - 364
Target Start/End: Complemental strand, 24474482 - 24474394
Alignment:
Q  276 aatcaattattcgaaagagtttagatgcaacatctccattttctctaattatgcataaattggtttttataaaaaatcacgcacagtca 364  Q
    ||||||||||||||||| |||| |||||||||||| ||||||||| ||||||||||||||||||||| |||||||||||||||||||||    
T  24474482 aatcaattattcgaaagggttttgatgcaacatcttcattttctcaaattatgcataaattggttttcataaaaaatcacgcacagtca 24474394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 180 - 272
Target Start/End: Original strand, 24228273 - 24228365
Alignment:
Q  180 aacatctgacgtgtcatgacttgaaatctgattggctgaattaaacgacttcaccgaaaaagtcaattctccgacttcttcatagaagctccc 272  Q
    |||||||||||||||||| ||||||||||||||||   | | |||||||||||||||| |||||| ||  |||||||| ||||||||||||||    
T  24228273 aacatctgacgtgtcatggcttgaaatctgattggtccattcaaacgacttcaccgaagaagtcatttacccgacttcatcatagaagctccc 24228365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 50 - 117
Target Start/End: Original strand, 45989609 - 45989676
Alignment:
Q  50 aagaaaaatcatgtgtagagggtgtaccacgataacatagagaccaaacaaatctaaccgttaagatc 117  Q
    ||||||||||||||||||| ||| |||||| ||||||||||||||||  |||||||||||||||||||    
T  45989609 aagaaaaatcatgtgtagatggtataccacaataacatagagaccaattaaatctaaccgttaagatc 45989676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 50 - 127
Target Start/End: Complemental strand, 20133487 - 20133410
Alignment:
Q  50 aagaaaaatcatgtgtagagggtgtaccacgataacatagagaccaaacaaatctaaccgttaagatcttgaaataaa 127  Q
    ||||||||||||||||||| |||||||||| |||||||||||| |||  |||||||||| |||| ||| |||||||||    
T  20133487 aagaaaaatcatgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaaaatcatgaaataaa 20133410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 24 - 117
Target Start/End: Original strand, 42069019 - 42069112
Alignment:
Q  24 taaagaggaaagagaattggaaaaataagaaaaatcatgtgtagagggtgtaccacgataacatagagaccaaacaaatctaaccgttaagatc 117  Q
    ||||||||| | ||||||| ||  | ||||||||||||||||||| ||| |||||| |||||||||||| |||  |||||||||||||||||||    
T  42069019 taaagaggagaaagaattgaaattagaagaaaaatcatgtgtagatggtataccacaataacatagagatcaattaaatctaaccgttaagatc 42069112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 23 - 127
Target Start/End: Original strand, 55919359 - 55919463
Alignment:
Q  23 ataaagaggaaagagaattggaaaaataagaaaaatcatgtgtagagggtgtaccacgataacatagagaccaaacaaatctaaccgttaagatcttgaa 122  Q
    |||||||||| ||| |||||| |  | ||||||||||||||||||| |||||||||| |||||||||||| |||  |||||||||  |||| ||| ||||    
T  55919359 ataaagaggagagaaaattggtactagaagaaaaatcatgtgtagatggtgtaccacaataacatagagatcaagtaaatctaactattaaaatcatgaa 55919458  T
Q  123 ataaa 127  Q
    |||||    
T  55919459 ataaa 55919463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 183 - 277
Target Start/End: Original strand, 15531344 - 15531438
Alignment:
Q  183 atctgacgtgtcatgacttgaaatctgattggctgaattaaacgacttcaccgaaaaagtcaattctccgacttcttcatagaagctcccatcaa 277  Q
    ||||||||| |||| ||||||||||||||||| | | | |||||||||||| |||||||||| || || ||||||| | ||||||||||| ||||    
T  15531344 atctgacgtatcatcacttgaaatctgattggttcattcaaacgacttcactgaaaaagtcatttttctgacttctccgtagaagctcccttcaa 15531438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 50 - 117
Target Start/End: Original strand, 47031458 - 47031525
Alignment:
Q  50 aagaaaaatcatgtgtagagggtgtaccacgataacatagagaccaaacaaatctaaccgttaagatc 117  Q
    ||||||||||||||||||| ||| |||||| |||||||||||| |||  |||||||||| ||||||||    
T  47031458 aagaaaaatcatgtgtagatggtataccacaataacatagagatcaattaaatctaaccattaagatc 47031525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 23 - 127
Target Start/End: Complemental strand, 28679612 - 28679508
Alignment:
Q  23 ataaagaggaaagagaattggaaaaataagaaaaatcatgtgtagagggtgtaccacgataacatagagaccaaacaaatctaaccgttaagatcttgaa 122  Q
    |||||||||| ||| |||||| |  | ||||||||||||||||||| ||| |||||| |||||||||||| |||  |||| ||||  |||||||| | ||    
T  28679612 ataaagaggagagaaaattggtactagaagaaaaatcatgtgtagatggtataccacaataacatagagatcaagtaaatttaactattaagatcataaa 28679513  T
Q  123 ataaa 127  Q
    |||||    
T  28679512 ataaa 28679508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 56 - 127
Target Start/End: Original strand, 15531216 - 15531287
Alignment:
Q  56 aatcatgtgtagagggtgtaccacgataacatagagaccaaacaaatctaaccgttaagatcttgaaataaa 127  Q
    |||||||||||||  || |||||| ||||||||||||| ||  |||||||||| |||||||| |||||||||    
T  15531216 aatcatgtgtagacagtataccacaataacatagagactaagtaaatctaaccattaagatcatgaaataaa 15531287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 272
Target Start/End: Complemental strand, 20133351 - 20133265
Alignment:
Q  186 tgacgtgtcatgacttgaaatctgattggctgaattaaacgacttcaccgaaaaagtcaattctccgacttcttcatagaagctccc 272  Q
    ||||||||||| | || |||||||||||||  | | |||||||||||||||| |||||| ||  | |||||| ||||||||||||||    
T  20133351 tgacgtgtcatcatttaaaatctgattggcccattcaaacgacttcaccgaagaagtcattttcctgacttcatcatagaagctccc 20133265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 272
Target Start/End: Original strand, 55919526 - 55919608
Alignment:
Q  190 gtgtcatgacttgaaatctgattggctgaattaaacgacttcaccgaaaaagtcaattctccgacttcttcatagaagctccc 272  Q
    ||||||| | || |||||||||||||  | | |||||||||||||||| |||||| ||  | |||||| ||||||||||||||    
T  55919526 gtgtcatcatttaaaatctgattggcccattcaaacgacttcaccgaagaagtcattttcctgacttcatcatagaagctccc 55919608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 238; Significance: 1e-131; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 9 - 274
Target Start/End: Complemental strand, 14096515 - 14096250
Alignment:
Q  9 gagatgaatgagtgataaagaggaaagagaattggaaaaataagaaaaatcatgtgtagagggtgtaccacgataacatagagaccaaacaaatctaacc 108  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| ||| |||||||||||||||||||||||     
T  14096515 gagatgaatgagtgataaagaggaaatagaattggaaaaataagaaaaatcatgtgtagagcgtgtaccacaatatcatagagaccaaacaaatctaacg 14096416  T
Q  109 gttaagatcttgaaataaacttgtctatggtggaacatatgaaacaagtgatccatattagaatttgtcccaacatctgacgtgtcatgacttgaaatct 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  14096415 gttaagatcttgaaataaacttgtctatggtggaacatatgaaacaagtgatccatattagaatttgtcccaacatctgacgtgtcatgtcttgaaatct 14096316  T
Q  209 gattggctgaattaaacgacttcaccgaaaaagtcaattctccgacttcttcatagaagctcccat 274  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  14096315 gattggctgaattaaacgacttcaccgaaaaagtcaattccccgacttcttcatagaagctcccat 14096250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 168 - 272
Target Start/End: Original strand, 18977203 - 18977307
Alignment:
Q  168 agaatttgtcccaacatctgacgtgtcatgacttgaaatctgattggctgaattaaacgacttcaccgaaaaagtcaattctccgacttcttcatagaag 267  Q
    |||||||| | | |||| ||||||||||| |||| |||||||||||||||||||||||||||||| |||| |||||| ||  | ||||||||||||||||    
T  18977203 agaatttgcctctacatgtgacgtgtcatcacttaaaatctgattggctgaattaaacgacttcatcgaagaagtcattttcctgacttcttcatagaag 18977302  T
Q  268 ctccc 272  Q
    |||||    
T  18977303 ctccc 18977307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 23 - 140
Target Start/End: Original strand, 18977083 - 18977200
Alignment:
Q  23 ataaagaggaaagagaattggaaaaataagaaaaatcatgtgtagagggtgtaccacgataacatagagaccaaacaaatctaaccgttaagatcttgaa 122  Q
    |||||||||| ||| |||||| |  | ||||||| | ||||||||| |||||||||| ||||||||||||| ||  ||||||||| ||||||||| ||||    
T  18977083 ataaagaggagagataattggtactagaagaaaagttatgtgtagatggtgtaccacaataacatagagactaagtaaatctaactgttaagatcatgaa 18977182  T
Q  123 ataaacttgtctatggtg 140  Q
    ||||||||||| ||||||    
T  18977183 ataaacttgtccatggtg 18977200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 23 - 127
Target Start/End: Original strand, 14810087 - 14810191
Alignment:
Q  23 ataaagaggaaagagaattggaaaaataagaaaaatcatgtgtagagggtgtaccacgataacatagagaccaaacaaatctaaccgttaagatcttgaa 122  Q
    |||||||||| ||| |||||| |  | ||||||||||||||||||| |||||||||| |||||||||||| |||| |||||||||| |||| ||| ||||    
T  14810087 ataaagaggagagaaaattggtactagaagaaaaatcatgtgtagatggtgtaccacaataacatagagatcaaataaatctaaccattaaaatcatgaa 14810186  T
Q  123 ataaa 127  Q
    |||||    
T  14810187 ataaa 14810191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 23 - 127
Target Start/End: Complemental strand, 15330839 - 15330735
Alignment:
Q  23 ataaagaggaaagagaattggaaaaataagaaaaatcatgtgtagagggtgtaccacgataacatagagaccaaacaaatctaaccgttaagatcttgaa 122  Q
    |||||||||| ||| |||||| |  | ||||||||||||||||||| |||||||||| |||||||||||| |||  |||||||||| |||| ||| ||||    
T  15330839 ataaagaggagagaaaattggtactagaagaaaaatcatgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaaaatcatgaa 15330740  T
Q  123 ataaa 127  Q
    |||||    
T  15330739 ataaa 15330735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 23 - 127
Target Start/End: Original strand, 37261669 - 37261773
Alignment:
Q  23 ataaagaggaaagagaattggaaaaataagaaaaatcatgtgtagagggtgtaccacgataacatagagaccaaacaaatctaaccgttaagatcttgaa 122  Q
    |||||||||| ||| |||||| |  | ||||||||||||||||||| |||||||||| |||||||||||| |||  |||||||||| |||| ||| ||||    
T  37261669 ataaagaggagagaaaattggtactagaagaaaaatcatgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaaaatcatgaa 37261768  T
Q  123 ataaa 127  Q
    |||||    
T  37261769 ataaa 37261773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 183 - 272
Target Start/End: Complemental strand, 7089168 - 7089079
Alignment:
Q  183 atctgacgtgtcatgacttgaaatctgattggctgaattaaacgacttcaccgaaaaagtcaattctccgacttcttcatagaagctccc 272  Q
    |||||||||||||| ||||||||||| ||||||  | | ||||||||||| ||||||||||  || || |||||||||||||||||||||    
T  7089168 atctgacgtgtcatcacttgaaatctaattggcccattcaaacgacttcatcgaaaaagtcgtttttctgacttcttcatagaagctccc 7089079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 23 - 127
Target Start/End: Complemental strand, 16429968 - 16429864
Alignment:
Q  23 ataaagaggaaagagaattggaaaaataagaaaaatcatgtgtagagggtgtaccacgataacatagagaccaaacaaatctaaccgttaagatcttgaa 122  Q
    |||||||||| ||| |||||| |  | ||||||||||||||||||| |||||||||  |||||||||||| |||  |||||||||| |||| ||| ||||    
T  16429968 ataaagaggagagaaaattggtactagaagaaaaatcatgtgtagatggtgtaccataataacatagagatcaagtaaatctaaccattaaaatcatgaa 16429869  T
Q  123 ataaa 127  Q
    |||||    
T  16429868 ataaa 16429864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 23 - 127
Target Start/End: Complemental strand, 17690708 - 17690604
Alignment:
Q  23 ataaagaggaaagagaattggaaaaataagaaaaatcatgtgtagagggtgtaccacgataacatagagaccaaacaaatctaaccgttaagatcttgaa 122  Q
    |||||||||| ||| |||||| |  | ||||||||||||||||||| |||||||||| |||||||||||| |||  |||||||||| |||| ||| | ||    
T  17690708 ataaagaggagagaaaattggtactagaagaaaaatcatgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaaaatcataaa 17690609  T
Q  123 ataaa 127  Q
    |||||    
T  17690608 ataaa 17690604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 183 - 267
Target Start/End: Original strand, 33755203 - 33755287
Alignment:
Q  183 atctgacgtgtcatgacttgaaatctgattggctgaattaaacgacttcaccgaaaaagtcaattctccgacttcttcatagaag 267  Q
    |||||||||||||| ||||||||||| |||| |  | | ||||||||||||||||||||||  || || ||||||||||||||||    
T  33755203 atctgacgtgtcatcacttgaaatctaattgacccattcaaacgacttcaccgaaaaagtcgtttttctgacttcttcatagaag 33755287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 184 - 272
Target Start/End: Complemental strand, 37078890 - 37078802
Alignment:
Q  184 tctgacgtgtcatgacttgaaatctgattggctgaattaaacgacttcaccgaaaaagtcaattctccgacttcttcatagaagctccc 272  Q
    ||||||||||||| |||| |||||||||||||  | | | |||||||||||||| |||||| ||  | ||||||||| |||||||||||    
T  37078890 tctgacgtgtcatcacttaaaatctgattggcccattcagacgacttcaccgaagaagtcattttcctgacttcttcgtagaagctccc 37078802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 23 - 127
Target Start/End: Complemental strand, 37079051 - 37078947
Alignment:
Q  23 ataaagaggaaagagaattggaaaaataagaaaaatcatgtgtagagggtgtaccacgataacatagagaccaaacaaatctaaccgttaagatcttgaa 122  Q
    ||||| |||| |||||||||| |  | ||||||| ||||||||||| | |||||||| |||||||| ||| |||  |||||||||  |||||||| ||||    
T  37079051 ataaaaaggagagagaattggtactagaagaaaattcatgtgtagatgttgtaccacaataacataaagatcaagtaaatctaactattaagatcatgaa 37078952  T
Q  123 ataaa 127  Q
    |||||    
T  37078951 ataaa 37078947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 276 - 350
Target Start/End: Complemental strand, 16592668 - 16592594
Alignment:
Q  276 aatcaattattcgaaagagtttagatgcaacatctccattttctctaattatgcataaattggtttttataaaaa 350  Q
    |||||||||||||||||||||||||||| |||||  ||||||||| ||  |||||||| ||  |||| |||||||    
T  16592668 aatcaattattcgaaagagtttagatgctacatcatcattttctcaaaacatgcataactttattttcataaaaa 16592594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 272
Target Start/End: Complemental strand, 17690545 - 17690459
Alignment:
Q  186 tgacgtgtcatgacttgaaatctgattggctgaattaaacgacttcaccgaaaaagtcaattctccgacttcttcatagaagctccc 272  Q
    ||||||||||| | || |||||||||||||  | | |||||||||||||||| |||||| ||  | || ||| ||||||||||||||    
T  17690545 tgacgtgtcatcatttaaaatctgattggcccattcaaacgacttcaccgaagaagtcattttcctgagttcatcatagaagctccc 17690459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 127
Target Start/End: Complemental strand, 7089278 - 7089225
Alignment:
Q  74 taccacgataacatagagaccaaacaaatctaaccgttaagatcttgaaataaa 127  Q
    |||||| |||||||||||| |||  |||||||||| |||||||| |||||||||    
T  7089278 taccacaataacatagagatcaagtaaatctaaccattaagatcatgaaataaa 7089225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 267
Target Start/End: Complemental strand, 16429805 - 16429724
Alignment:
Q  186 tgacgtgtcatgacttgaaatctgattggctgaattaaacgacttcaccgaaaaagtcaattctccgacttcttcatagaag 267  Q
    ||||||||||| | || |||||||||||||  | | |||||||||||||||| |||||| ||  | |||||| |||||||||    
T  16429805 tgacgtgtcatcatttaaaatctgattggcctattcaaacgacttcaccgaagaagtcattttcctgacttcatcatagaag 16429724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 10 - 273
Target Start/End: Complemental strand, 27286422 - 27286159
Alignment:
Q  10 agatgaatgagtgataaagaggaaagagaattggaaaaataagaaaaatcatgtgtagagggtgtaccacgataacatagagaccaaacaaatctaaccg 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  27286422 agatgaatgagtgataaagaggaaagagaattggaaaaataagaaaaatcatgtgtagagggtgtaccacaataacatagagaccaaacaaatctaaccg 27286323  T
Q  110 ttaagatcttgaaataaacttgtctatggtggaacatatgaaacaagtgatccatattagaatttgtcccaacatctgacgtgtcatgacttgaaatctg 209  Q
    ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| || || |||||||||||||||||||||| |||||||||||    
T  27286322 ttaagattttgaaataaacttgtctatggtggaacatatgaagcaagtgatccatattaaaaattttcccaacatctgacgtgtcatggcttgaaatctg 27286223  T
Q  210 attggctgaattaaacgacttcaccgaaaaagtcaattctccgacttcttcatagaagctccca 273  Q
    |||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  27286222 attggctgaattaaacgacttcaccgaaaaagtcaattcctcgacttcttcatagaagctccca 27286159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 9 - 272
Target Start/End: Original strand, 52385772 - 52386035
Alignment:
Q  9 gagatgaatgagtgataaagaggaaagagaattggaaaaataagaaaaatcatgtgtagagggtgtaccacgataacatagagaccaaacaaatctaacc 108  Q
    |||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||    
T  52385772 gagatgaatgggtgataaagaggaaagagaattggaaaagtaagaaaaatcatgtgtagagggtgtaccacaataacatagagatcaaacaaatctaacc 52385871  T
Q  109 gttaagatcttgaaataaacttgtctatggtggaacatatgaaacaagtgatccatattagaatttgtcccaacatctgacgtgtcatgacttgaaatct 208  Q
    || ||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| ||| |||||||| ||||||||||    
T  52385872 gtaaagatcttgaaataaacttgtctatggtggaacatatgaaacacgtgatccattttagaatttgtcccaacatatgatgtgtcatggcttgaaatct 52385971  T
Q  209 gattggctgaattaaacgacttcaccgaaaaagtcaattctccgacttcttcatagaagctccc 272  Q
    |||||||||||||||||||||||||||||||||||||||  || ||||||||||||||||||||    
T  52385972 gattggctgaattaaacgacttcaccgaaaaagtcaatttcccaacttcttcatagaagctccc 52386035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 50 - 271
Target Start/End: Complemental strand, 39241773 - 39241555
Alignment:
Q  50 aagaaaaatcatgtgtagagggtgtaccacgataacatagagaccaaacaaatctaaccgttaagatcttgaaataaacttgtctatggtggaacatatg 149  Q
    ||||||||||||||||||| |||||||||| |||||| |||   ||   ||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  39241773 aagaaaaatcatgtgtagatggtgtaccacaataacaaaga---caggtaaatctaaccgttaagatcatgaaataaacttgtctatggtggaacatatg 39241677  T
Q  150 aaacaagtgatccatattagaatttgtcccaacatctgacgtgtcatgacttgaaatctgattggctgaatt-aaacgacttcaccgaaaaagtcaattc 248  Q
    || |||||||| |||||||||||||||| ||||||||||||||| || |||| ||||||||||| |   ||| ||||||||||| |||| |||||| ||     
T  39241676 aagcaagtgat-catattagaatttgtctcaacatctgacgtgttatcacttaaaatctgattgaccccattcaaacgacttcatcgaagaagtcatttt 39241578  T
Q  249 tccgacttcttcatagaagctcc 271  Q
     |  |||||||||||||||||||    
T  39241577 cctaacttcttcatagaagctcc 39241555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 23 - 127
Target Start/End: Complemental strand, 12981625 - 12981521
Alignment:
Q  23 ataaagaggaaagagaattggaaaaataagaaaaatcatgtgtagagggtgtaccacgataacatagagaccaaacaaatctaaccgttaagatcttgaa 122  Q
    |||||||||| ||| |||||| |  | ||||||||||||||||||| |||||||||| |||||||||||| |||  |||||||||| |||| ||| ||||    
T  12981625 ataaagaggagagaaaattggtactagaagaaaaatcatgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaaaatcatgaa 12981526  T
Q  123 ataaa 127  Q
    |||||    
T  12981525 ataaa 12981521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 23 - 127
Target Start/End: Original strand, 45348240 - 45348344
Alignment:
Q  23 ataaagaggaaagagaattggaaaaataagaaaaatcatgtgtagagggtgtaccacgataacatagagaccaaacaaatctaaccgttaagatcttgaa 122  Q
    |||||||||| ||| |||||| |  | ||||||||||||||||||| |||||||||| |||||||||||| |||  |||||||||| |||| ||| ||||    
T  45348240 ataaagaggagagaaaattggtactagaagaaaaatcatgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaaaatcatgaa 45348339  T
Q  123 ataaa 127  Q
    |||||    
T  45348340 ataaa 45348344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 51 - 117
Target Start/End: Original strand, 45325635 - 45325701
Alignment:
Q  51 agaaaaatcatgtgtagagggtgtaccacgataacatagagaccaaacaaatctaaccgttaagatc 117  Q
    |||||||||||||||||| ||| |||||| ||||||||||||| ||  |||||||||||||||||||    
T  45325635 agaaaaatcatgtgtagatggtataccacaataacatagagactaattaaatctaaccgttaagatc 45325701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 186 - 274
Target Start/End: Complemental strand, 12981462 - 12981374
Alignment:
Q  186 tgacgtgtcatgacttgaaatctgattggctgaattaaacgacttcaccgaaaaagtcaattctccgacttcttcatagaagctcccat 274  Q
    ||||||||||| | || |||||||||||||  | | |||||||||||||||| |||||| ||  | |||||| ||||||||||||||||    
T  12981462 tgacgtgtcatcatttaaaatctgattggcccattcaaacgacttcaccgaagaagtcattttcctgacttcatcatagaagctcccat 12981374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 201 - 272
Target Start/End: Complemental strand, 49409831 - 49409760
Alignment:
Q  201 tgaaatctgattggctgaattaaacgacttcaccgaaaaagtcaattctccgacttcttcatagaagctccc 272  Q
    |||||| |||||||| ||||||||||||| | | ||| ||||||||| |||||||||||  |||||||||||    
T  49409831 tgaaatttgattggccgaattaaacgactgcgctgaagaagtcaattatccgacttctttctagaagctccc 49409760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 9 - 272
Target Start/End: Complemental strand, 19436931 - 19436668
Alignment:
Q  9 gagatgaatgagtgataaagaggaaagagaattggaaaaataagaaaaatcatgtgtagagggtgtaccacgataacatagagaccaaacaaatctaacc 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||     
T  19436931 gagatgaatgagtgataaagaggaaagagaattggaaaaataagaaaaatcatgtgtatagggtgtaccacaataacatagagaccaaacaaatctaact 19436832  T
Q  109 gttaagatcttgaaataaacttgtctatggtggaacatatgaaacaagtgatccatattagaatttgtcccaacatctgacgtgtcatgacttgaaatct 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| ||||||||||    
T  19436831 gttaagatcttgaaataaacttgtctatggtggaacatatgaaacaagtgatccatattagaatttgtcccaacatatgacgtatcatggcttgaaatct 19436732  T
Q  209 gattggctgaattaaacgacttcaccgaaaaagtcaattctccgacttcttcatagaagctccc 272  Q
    ||||||||||||||||||||||||||||||||||| |||| || ||||||||||| ||||||||    
T  19436731 gattggctgaattaaacgacttcaccgaaaaagtctattccccaacttcttcataaaagctccc 19436668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 9 - 272
Target Start/End: Original strand, 29833903 - 29834166
Alignment:
Q  9 gagatgaatgagtgataaagaggaaagagaattggaaaaataagaaaaatcatgtgtagagggtgtaccacgataacatagagaccaaacaaatctaacc 108  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||| |||||||||||||||||||||||||||     
T  29833903 gagatgaatgagtgataaagaggaaagagaattggaaaaataagtaaaatcatgtgcagagggtttaccacaataacatagagaccaaacaaatctaact 29834002  T
Q  109 gttaagatcttgaaataaacttgtctatggtggaacatatgaaacaagtgatccatattagaatttgtcccaacatctgacgtgtcatgacttgaaatct 208  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| ||||||| ||||||||||    
T  29834003 gttaagatcttgaaataaacttgtctatggtggaacatatgaagcaagtgatccatattagagtttgtcccaacatctgacatgtcatggcttgaaatct 29834102  T
Q  209 gattggctgaattaaacgacttcaccgaaaaagtcaattctccgacttcttcatagaagctccc 272  Q
    |||||||||||||||||||||| ||| ||||||||||||| ||||||||||| |||||||||||    
T  29834103 gattggctgaattaaacgactttaccaaaaaagtcaattccccgacttcttcgtagaagctccc 29834166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 99 - 269
Target Start/End: Complemental strand, 29258556 - 29258386
Alignment:
Q  99 aaatctaaccgttaa-gatcttgaaataaacttgtctatggtggaacatatgaaacaagtgatccatattagaatttgtcccaacatctgacgtgtcatg 197  Q
    ||||||||||||||| |||  ||||||||||||||| | ||||||||| ||| | |||||||||||| ||||||||||||| |  ||||||||||||||     
T  29258556 aaatctaaccgttaaagattatgaaataaacttgtccacggtggaacacatggagcaagtgatccatgttagaatttgtcc-attatctgacgtgtcatc 29258458  T
Q  198 acttgaaatctgattggctgaattaaacgacttcaccgaaaaagtcaattctccgacttcttcatagaagct 269  Q
    ||||||||||||||||||  | | |||| ||| || |||| |||||||||  ||||||||||||||||||||    
T  29258457 acttgaaatctgattggcccattcaaacaactgcatcgaagaagtcaattgcccgacttcttcatagaagct 29258386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 23 - 127
Target Start/End: Complemental strand, 45972527 - 45972423
Alignment:
Q  23 ataaagaggaaagagaattggaaaaataagaaaaatcatgtgtagagggtgtaccacgataacatagagaccaaacaaatctaaccgttaagatcttgaa 122  Q
    |||||||||| ||| |||||| |  | ||||||||||||||||||| |||||||||| |||||||||||| |||  |||||||||| |||| ||| ||||    
T  45972527 ataaagaggagagaaaattggtactagaagaaaaatcatgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaaaatcatgaa 45972428  T
Q  123 ataaa 127  Q
    |||||    
T  45972427 ataaa 45972423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 50 - 117
Target Start/End: Complemental strand, 6442703 - 6442636
Alignment:
Q  50 aagaaaaatcatgtgtagagggtgtaccacgataacatagagaccaaacaaatctaaccgttaagatc 117  Q
    ||||||||||||||||||| ||| |||||| ||||||||||||||||  ||||||||| |||||||||    
T  6442703 aagaaaaatcatgtgtagatggtataccacaataacatagagaccaattaaatctaacagttaagatc 6442636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 50 - 116
Target Start/End: Complemental strand, 34094184 - 34094118
Alignment:
Q  50 aagaaaaatcatgtgtagagggtgtaccacgataacatagagaccaaacaaatctaaccgttaagat 116  Q
    ||||||||||||||||||| ||| |||||| |||||||||||| |||  ||||||||||||||||||    
T  34094184 aagaaaaatcatgtgtagatggtataccacaataacatagagatcaattaaatctaaccgttaagat 34094118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 50 - 127
Target Start/End: Complemental strand, 29243455 - 29243380
Alignment:
Q  50 aagaaaaatcatgtgtagagggtgtaccacgataacatagagaccaaacaaatctaaccgttaagatcttgaaataaa 127  Q
    ||||||||||||||||||| |||||||||| |||  ||||||| |||  |||||||||| |||||||| |||||||||    
T  29243455 aagaaaaatcatgtgtagatggtgtaccacaata--atagagatcaagtaaatctaaccattaagatcatgaaataaa 29243380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 186 - 275
Target Start/End: Complemental strand, 45972364 - 45972275
Alignment:
Q  186 tgacgtgtcatgacttgaaatctgattggctgaattaaacgacttcaccgaaaaagtcaattctccgacttcttcatagaagctcccatc 275  Q
    ||||||||||| | || |||||||||||||  | | |||||||||||||||| |||||| ||  | |||||| |||||||||||||||||    
T  45972364 tgacgtgtcatcatttaaaatctgattggcccattcaaacgacttcaccgaagaagtcattttcctgacttcatcatagaagctcccatc 45972275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 23 - 127
Target Start/End: Complemental strand, 47328046 - 47327942
Alignment:
Q  23 ataaagaggaaagagaattggaaaaataagaaaaatcatgtgtagagggtgtaccacgataacatagagaccaaacaaatctaaccgttaagatcttgaa 122  Q
    ||||| |||| |||||||||| |  | ||||||| ||||||||||| | |||||||| |||||||| ||| |||  |||||||||  |||||||| ||||    
T  47328046 ataaaaaggagagagaattggtactagaagaaaattcatgtgtagatgttgtaccacaataacataaagatcaagtaaatctaactattaagatcatgaa 47327947  T
Q  123 ataaa 127  Q
    |||||    
T  47327946 ataaa 47327942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 184 - 273
Target Start/End: Complemental strand, 47327885 - 47327796
Alignment:
Q  184 tctgacgtgtcatgacttgaaatctgattggctgaattaaacgacttcaccgaaaaagtcaattctccgacttcttcatagaagctccca 273  Q
    |||||||||||||  ||| |||||||||||||  | | | |||||||||||||| |||||| ||  | ||||||||| ||||||||||||    
T  47327885 tctgacgtgtcatcgcttaaaatctgattggcccattcagacgacttcaccgaagaagtcattttcctgacttcttcgtagaagctccca 47327796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 272
Target Start/End: Complemental strand, 29243323 - 29243235
Alignment:
Q  184 tctgacgtgtcatgacttgaaatctgattggctgaattaaacgacttcaccgaaaaagtcaattctccgacttcttcatagaagctccc 272  Q
    ||||||||||||| | || ||||||||||| |  | | |||||||||||||||| |||||| ||  | |||||| ||||||||||||||    
T  29243323 tctgacgtgtcatcatttaaaatctgattgacccattcaaacgacttcaccgaagaagtcattttcctgacttcatcatagaagctccc 29243235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 272
Target Start/End: Complemental strand, 34094042 - 34093973
Alignment:
Q  203 aaatctgattggctgaattaaacgacttcaccgaaaaagtcaattctccgacttcttcatagaagctccc 272  Q
    |||||||||||||  | | |||||||| ||||||| |||||| || || ||||||||| |||||||||||    
T  34094042 aaatctgattggcccattcaaacgactgcaccgaagaagtcatttttctgacttcttcgtagaagctccc 34093973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 216; Significance: 1e-118; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 9 - 272
Target Start/End: Complemental strand, 30625123 - 30624860
Alignment:
Q  9 gagatgaatgagtgataaagaggaaagagaattggaaaaataagaaaaatcatgtgtagagggtgtaccacgataacatagagaccaaacaaatctaacc 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  30625123 gagatgaatgagtgataaagaggaaagagaattggaaaaataagaaaaatcatgtgtagagggtgtaccacaataacatagagaccaaacaaatctaacc 30625024  T
Q  109 gttaagatcttgaaataaacttgtctatggtggaacatatgaaacaagtgatccatattagaatttgtcccaacatctgacgtgtcatgacttgaaatct 208  Q
    ||||| || |||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |||||||||||||||||||||||||||||||||    
T  30625023 gttaaaattttgaaataaacttgtctatggtggaacatatgaagcaagtgatccatattaaaatttatcccaacatctgacgtgtcatgacttgaaatct 30624924  T
Q  209 gattggctgaattaaacgacttcaccgaaaaagtcaattctccgacttcttcatagaagctccc 272  Q
    |||||| ||||||||||||||||||  ||||||||||||   ||||||||||||||||||||||    
T  30624923 gattggttgaattaaacgacttcactaaaaaagtcaatttctcgacttcttcatagaagctccc 30624860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 9 - 273
Target Start/End: Original strand, 41413401 - 41413665
Alignment:
Q  9 gagatgaatgagtgataaagaggaaagagaattggaaaaataagaaaaatcatgtgtagagggtgtaccacgataacatagagaccaaacaaatctaacc 108  Q
    |||||| ||||||||||||||||||||||| ||||||  ||||||||||||||||||| |||||||||||| |||||||||| |||||  ||| ||||||    
T  41413401 gagatgcatgagtgataaagaggaaagagatttggaattataagaaaaatcatgtgtaaagggtgtaccacaataacatagacaccaagtaaacctaacc 41413500  T
Q  109 gttaagatcttgaaataaacttgtctatggtggaacatatgaaacaagtgatccatattagaatttgtcccaacatctgacgtgtcatgacttgaaatct 208  Q
    ||||||||||||||||||||||||| | ||||||||||||||| |||||||||||||||| ||||||||| |||||||||||||||||| ||||||||||    
T  41413501 gttaagatcttgaaataaacttgtccacggtggaacatatgaagcaagtgatccatattataatttgtcctaacatctgacgtgtcatggcttgaaatct 41413600  T
Q  209 gattggctgaattaaacgacttcaccgaaaaagtcaattctccgacttcttcatagaagctccca 273  Q
    ||||||   | | |||||||||||||||| |||||| ||  |||||||| |||||||||||||||    
T  41413601 gattggtccattcaaacgacttcaccgaagaagtcatttacccgacttcatcatagaagctccca 41413665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 9 - 274
Target Start/End: Complemental strand, 1828671 - 1828406
Alignment:
Q  9 gagatgaatgagtgataaagaggaaagagaattggaaaaataagaaaaatcatgtgtagagggtgtaccacgataacatagagaccaaacaaatctaacc 108  Q
    |||||| ||||||||||||||||| ||||| ||||||  ||||||||||||||||||| |||||||||||| |||||||||| |||||  ||| ||||||    
T  1828671 gagatgcatgagtgataaagaggagagagatttggaattataagaaaaatcatgtgtaaagggtgtaccacaataacatagacaccaagtaaacctaacc 1828572  T
Q  109 gttaagatcttgaaataaacttgtctatggtggaacatatgaaacaagtgatccatattagaatttgtcccaacatctgacgtgtcatgacttgaaatct 208  Q
    ||||||||||||||||||||||||| | ||||||||||||||| |||||||||||||||| ||||||||  |||||||||||||||||| ||||||||||    
T  1828571 gttaagatcttgaaataaacttgtccacggtggaacatatgaagcaagtgatccatattataatttgtcataacatctgacgtgtcatggcttgaaatct 1828472  T
Q  209 gattggctgaattaaacgacttcaccgaaaaagtcaattctccgacttcttcatagaagctcccat 274  Q
    ||||||   | | |||||||||||||||| |||||| ||  |||||||| ||||||||||||||||    
T  1828471 gattggtccattcaaacgacttcaccgaagaagtcatttacccgacttcatcatagaagctcccat 1828406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 9 - 273
Target Start/End: Complemental strand, 40314136 - 40313872
Alignment:
Q  9 gagatgaatgagtgataaagaggaaagagaattggaaaaataagaaaaatcatgtgtagagggtgtaccacgataacatagagaccaaacaaatctaacc 108  Q
    |||||| ||||||||||||||||| ||||| ||||||  ||||||||||||||||||| |||||||||||| |||||||||| |||||  ||| ||||||    
T  40314136 gagatgcatgagtgataaagaggagagagatttggaattataagaaaaatcatgtgtaaagggtgtaccacaataacatagacaccaagtaaacctaacc 40314037  T
Q  109 gttaagatcttgaaataaacttgtctatggtggaacatatgaaacaagtgatccatattagaatttgtcccaacatctgacgtgtcatgacttgaaatct 208  Q
    ||||||||||||||||||||||||| | ||||||||||||||| |||||||||||||||  ||||||||| |||||||||||||||||| ||||||||||    
T  40314036 gttaagatcttgaaataaacttgtccacggtggaacatatgaagcaagtgatccatattgtaatttgtcctaacatctgacgtgtcatggcttgaaatct 40313937  T
Q  209 gattggctgaattaaacgacttcaccgaaaaagtcaattctccgacttcttcatagaagctccca 273  Q
    ||||||   | | |||||||||||||||| |||||| ||  |||||||| |||||||||||||||    
T  40313936 gattggtccattcaaacgacttcaccgaagaagtcatttacccgacttcatcatagaagctccca 40313872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 53 - 272
Target Start/End: Original strand, 31482071 - 31482290
Alignment:
Q  53 aaaaatcatgtgtagagggtgtaccacgataacatagagaccaaacaaatctaaccgttaagatcttgaaataaacttgtctatggtggaacatatgaaa 152  Q
    |||||| ||||||||| |||||||||  ||| |||||||||||||||||||||||| |||||||| |||| ||||  |||||||||||||||||||| |     
T  31482071 aaaaattatgtgtagatggtgtaccataataccatagagaccaaacaaatctaaccattaagatcatgaagtaaatctgtctatggtggaacatatggag 31482170  T
Q  153 caagtgatccatattagaatttgtcccaacatctgacgtgtcatgacttgaaatctgattggctgaattaaacgacttcaccgaaaaagtcaattctccg 252  Q
    |||||||||||||||| |||||||||  || ||||| ||||||| |||| |||| ||||||||| | | ||||||||| |||||| |||||| ||  | |    
T  31482171 caagtgatccatattataatttgtccttacttctgaagtgtcatcacttaaaatttgattggctcattcaaacgactttaccgaagaagtcattttactg 31482270  T
Q  253 acttcttcatagaagctccc 272  Q
    |||||||| |||||||||||    
T  31482271 acttcttcgtagaagctccc 31482290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 23 - 127
Target Start/End: Original strand, 24788296 - 24788400
Alignment:
Q  23 ataaagaggaaagagaattggaaaaataagaaaaatcatgtgtagagggtgtaccacgataacatagagaccaaacaaatctaaccgttaagatcttgaa 122  Q
    |||||||||| ||| |||||| |  | ||||||||||||||||||| |||||||||| |||||||||||| |||  |||||||||| |||| ||| | ||    
T  24788296 ataaagaggagagaaaattggtactagaagaaaaatcatgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaaaatcataaa 24788395  T
Q  123 ataaa 127  Q
    |||||    
T  24788396 ataaa 24788400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 183 - 272
Target Start/End: Complemental strand, 39884639 - 39884550
Alignment:
Q  183 atctgacgtgtcatgacttgaaatctgattggctgaattaaacgacttcaccgaaaaagtcaattctccgacttcttcatagaagctccc 272  Q
    |||||||||||||| |||||||||||||||||   | | ||||||||||||||||||||||| || || ||||||| | ||||| |||||    
T  39884639 atctgacgtgtcatcacttgaaatctgattggtccattcaaacgacttcaccgaaaaagtcatttttctgacttctccgtagaaactccc 39884550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 186 - 273
Target Start/End: Original strand, 24788459 - 24788546
Alignment:
Q  186 tgacgtgtcatgacttgaaatctgattggctgaattaaacgacttcaccgaaaaagtcaattctccgacttcttcatagaagctccca 273  Q
    ||||||||||| | || |||||||||||||  | | |||||||||||||||| |||||| ||  | |||||| |||||||||||||||    
T  24788459 tgacgtgtcatcatttaaaatctgattggcccattcaaacgacttcaccgaagaagtcattttcctgacttcatcatagaagctccca 24788546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 60 - 127
Target Start/End: Complemental strand, 39884763 - 39884696
Alignment:
Q  60 atgtgtagagggtgtaccacgataacatagagaccaaacaaatctaaccgttaagatcttgaaataaa 127  Q
    |||||||||  || |||||| ||||||||||||| ||  |||||||||| |||||||| |||||||||    
T  39884763 atgtgtagacagtataccacaataacatagagactaagtaaatctaaccattaagatcatgaaataaa 39884696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 207; Significance: 1e-113; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 9 - 267
Target Start/End: Complemental strand, 12938901 - 12938643
Alignment:
Q  9 gagatgaatgagtgataaagaggaaagagaattggaaaaataagaaaaatcatgtgtagagggtgtaccacgataacatagagaccaaacaaatctaacc 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  12938901 gagatgaatgagtgataaagaggaaagagaattggaaaaataagaaaaatcatgtgtagagggtgtaccacaataacatagagaccaaacaaatctaacc 12938802  T
Q  109 gttaagatcttgaaataaacttgtctatggtggaacatatgaaacaagtgatccatattagaatttgtcccaacatctgacgtgtcatgacttgaaatct 208  Q
    |||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||  ||| ||||||    
T  12938801 gttaagattttgaaataaacttgtctatggtggaacatatgaagcaagtgatccatattaaaatttgtcccaacatctgacgtgtcatcgcttaaaatct 12938702  T
Q  209 gattggctgaattaaacgacttcaccgaaaaagtcaattctccgacttcttcatagaag 267  Q
    |||||| ||||||||||||||||||  ||||||||||||   |||||||||||||||||    
T  12938701 gattggttgaattaaacgacttcactaaaaaagtcaatttctcgacttcttcatagaag 12938643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 9 - 247
Target Start/End: Complemental strand, 33695039 - 33694802
Alignment:
Q  9 gagatgaatgagtgataaagaggaaagagaattggaaaaataagaaaaatcatgtgtagagggtgtaccacgataacatagagaccaaacaaatctaacc 108  Q
    ||||||||||||||||||||| || |||||| |||||  |||||||||||||| ||||||||||||||||| |||| |||||| ||||| |||||||||     
T  33695039 gagatgaatgagtgataaagaagagagagaaatggaattataagaaaaatcatatgtagagggtgtaccacaataatatagaggccaaataaatctaact 33694940  T
Q  109 gttaagatcttgaaataaacttgtctatggtggaacatatgaaacaagtgatccatattagaatttgtcccaacatctgacgtgtcatgacttgaaatct 208  Q
    ||||||||| ||||||||| ||||||||| ||||||||||| | |||||||||||||||| ||||| | |||  |||| ||||||||| |||| ||||||    
T  33694939 gttaagatcatgaaataaatttgtctatgatggaacatatggagcaagtgatccatattaaaattt-ttccattatctaacgtgtcatcacttaaaatct 33694841  T
Q  209 gattggctgaattaaacgacttcaccgaaaaagtcaatt 247  Q
    ||||||   | | ||||||||||||||||||||||||||    
T  33694840 gattggtccattcaaacgacttcaccgaaaaagtcaatt 33694802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 50 - 229
Target Start/End: Original strand, 28138039 - 28138217
Alignment:
Q  50 aagaaaaatcatgtgtagagggtgtaccacgataacatagagaccaaacaaatctaaccgttaagatcttgaaataaacttgtctatggtggaacatatg 149  Q
    ||||||||||||||||||| |  ||||||| |||| |||||||||||  |||||||||| |||||||| ||||||||||||||| ||| ||| |||||||    
T  28138039 aagaaaaatcatgtgtagatgacgtaccacaataatatagagaccaagtaaatctaacctttaagatcatgaaataaacttgtccatgatgggacatatg 28138138  T
Q  150 aaacaagtgatccatattagaatttgtcccaacatctgacgtgtcatgacttgaaatctgattggctgaattaaacgact 229  Q
     | |||||| ||||||||| ||||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||    
T  28138139 gagcaagtggtccatattaaaatttgt-cctacatctgacgtgtcatgacttgaaatttgattggctgaattaaacgact 28138217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 187 - 270
Target Start/End: Complemental strand, 12466481 - 12466398
Alignment:
Q  187 gacgtgtcatgacttgaaatctgattggctgaattaaacgacttcaccgaaaaagtcaattctccgacttcttcatagaagctc 270  Q
    ||||||| |||||||||||| ||||||| |||||||||||||| ||||||||||||| |||  || ||||| | ||||||||||    
T  12466481 gacgtgttatgacttgaaatttgattggttgaattaaacgactgcaccgaaaaagtctatttcccaacttcatgatagaagctc 12466398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 173
Target Start/End: Original strand, 14532051 - 14532131
Alignment:
Q  93 ccaaacaaatctaaccgttaagatcttgaaataaacttgtctatggtggaacatatgaaacaagtgatccatattagaatt 173  Q
    |||||||||||||||| |||||||| |||| ||||| |||| |||||| |||||||  | |||||  | ||||||||||||    
T  14532051 ccaaacaaatctaaccattaagatcgtgaagtaaacctgtccatggtgaaacatatagagcaagttgttcatattagaatt 14532131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 319
Target Start/End: Original strand, 20891400 - 20891441
Alignment:
Q  278 tcaattattcgaaagagtttagatgcaacatctccattttct 319  Q
    |||||||||||||||| ||||||||| |||||| ||||||||    
T  20891400 tcaattattcgaaagaatttagatgctacatcttcattttct 20891441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 100; Significance: 2e-49; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 53 - 272
Target Start/End: Original strand, 13802682 - 13802901
Alignment:
Q  53 aaaaatcatgtgtagagggtgtaccacgataacatagagaccaaacaaatctaaccgttaagatcttgaaataaacttgtctatggtggaacatatgaaa 152  Q
    |||||| ||||||||| |||||||||  |||  ||||||||||||||||||||||| |||||||| | || ||||  |||||||||||||||||||| |     
T  13802682 aaaaattatgtgtagatggtgtaccataatacgatagagaccaaacaaatctaaccattaagatcatcaagtaaatctgtctatggtggaacatatggag 13802781  T
Q  153 caagtgatccatattagaatttgtcccaacatctgacgtgtcatgacttgaaatctgattggctgaattaaacgacttcaccgaaaaagtcaattctccg 252  Q
    |||||||||||||||| |||||||||  || ||||||||||||| |||| |||||||||||| | | | ||||||||| ||||||||||||| ||  | |    
T  13802782 caagtgatccatattataatttgtccttacttctgacgtgtcatcacttaaaatctgattggttcattcaaacgactttaccgaaaaagtcattttactg 13802881  T
Q  253 acttcttcatagaagctccc 272  Q
    |||||||| |||||||||||    
T  13802882 acttcttcgtagaagctccc 13802901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 53 - 177
Target Start/End: Complemental strand, 23613699 - 23613574
Alignment:
Q  53 aaaaatcatgtgtagagggtgtaccacgataacatagagaccaaacaaatctaaccgttaagatctt-gaaataaacttgtctatggtggaacatatgaa 151  Q
    |||||||||||||||||| |||||||| ||| ||| |||||||||||||||||||||||||||||||  ||| ||| || || ||||||||||||||  |    
T  23613699 aaaaatcatgtgtagaggctgtaccacaatatcatggagaccaaacaaatctaaccgttaagatcttaaaaaaaaagttatccatggtggaacatattga 23613600  T
Q  152 acaagtgatccatattagaatttgtc 177  Q
     |||||| ||||||||||||||||||    
T  23613599 gcaagtggtccatattagaatttgtc 23613574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 183 - 272
Target Start/End: Original strand, 3879600 - 3879689
Alignment:
Q  183 atctgacgtgtcatgacttgaaatctgattggctgaattaaacgacttcaccgaaaaagtcaattctccgacttcttcatagaagctccc 272  Q
    |||||||||||||| ||||||||||| ||||||| | | ||||||||||||||||||||||  || || ||||||||| |||||||||||    
T  3879600 atctgacgtgtcatcacttgaaatctaattggctcattcaaacgacttcaccgaaaaagtcgtttttctgacttcttcgtagaagctccc 3879689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 53 - 174
Target Start/End: Complemental strand, 23614338 - 23614215
Alignment:
Q  53 aaaaatcatgtgtagagggtgtaccacgataacatagagaccaaacaaatctaaccgttaagatctt--gaaataaacttgtctatggtggaacatatga 150  Q
    |||||||||||||||||||||| |||| |||  || |||||||||||||||||||||||||||||||   ||| ||| ||||| || ||| |||||||      
T  23614338 aaaaatcatgtgtagagggtgtgccacaatattatggagaccaaacaaatctaaccgttaagatcttaaaaaaaaaagttgtccatagtgaaacatattg 23614239  T
Q  151 aacaagtgatccatattagaattt 174  Q
    | |||||| || ||||||||||||    
T  23614238 atcaagtggtctatattagaattt 23614215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 23 - 127
Target Start/End: Complemental strand, 531788 - 531684
Alignment:
Q  23 ataaagaggaaagagaattggaaaaataagaaaaatcatgtgtagagggtgtaccacgataacatagagaccaaacaaatctaaccgttaagatcttgaa 122  Q
    |||||||||| ||| |||||| |  | ||||||||||||||||||| |||||||||| |||||||||||| |||  |||||||||| |||| ||  ||||    
T  531788 ataaagaggagagaaaattggtactagaagaaaaatcatgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaaaattatgaa 531689  T
Q  123 ataaa 127  Q
    |||||    
T  531688 ataaa 531684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 50 - 127
Target Start/End: Original strand, 30945452 - 30945527
Alignment:
Q  50 aagaaaaatcatgtgtagagggtgtaccacgataacatagagaccaaacaaatctaaccgttaagatcttgaaataaa 127  Q
    ||||||||||||||||||| |||||||||| |||  ||||||| |||  |||||||||| |||||||| |||||||||    
T  30945452 aagaaaaatcatgtgtagatggtgtaccacaata--atagagatcaagtaaatctaaccattaagatcatgaaataaa 30945527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 186 - 273
Target Start/End: Complemental strand, 531625 - 531538
Alignment:
Q  186 tgacgtgtcatgacttgaaatctgattggctgaattaaacgacttcaccgaaaaagtcaattctccgacttcttcatagaagctccca 273  Q
    ||||||||||| | || |||||||||||||  | | |||||||||||||||| |||||| ||  | |||||| |||||||||||||||    
T  531625 tgacgtgtcatcatttaaaatctgattggcccattcaaacgacttcaccgaagaagtcattttcctgacttcatcatagaagctccca 531538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 56 - 127
Target Start/End: Original strand, 3879472 - 3879543
Alignment:
Q  56 aatcatgtgtagagggtgtaccacgataacatagagaccaaacaaatctaaccgttaagatcttgaaataaa 127  Q
    |||||||||||||   | |||||| ||||||||||||||||  |||||||||| |||||||| |||||||||    
T  3879472 aatcatgtgtagacaatataccacaataacatagagaccaagtaaatctaaccattaagatcatgaaataaa 3879543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 23 - 127
Target Start/End: Original strand, 30679 - 30783
Alignment:
Q  23 ataaagaggaaagagaattggaaaaataagaaaaatcatgtgtagagggtgtaccacgataacatagagaccaaacaaatctaaccgttaagatcttgaa 122  Q
    |||||||||| ||| |||||| |  | ||||||||||||||||||| |||||||||| |||||||||||| |||  |||||||||| |||| ||| | ||    
T  30679 ataaagaggagagaaaattggtactagaagaaaaatcatgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaaaatcataaa 30778  T
Q  123 ataaa 127  Q
    |||||    
T  30779 ataaa 30783  T

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Target: scaffold0166; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 186 - 273
Target Start/End: Original strand, 30842 - 30929
Alignment:
Q  186 tgacgtgtcatgacttgaaatctgattggctgaattaaacgacttcaccgaaaaagtcaattctccgacttcttcatagaagctccca 273  Q
    ||||||||||| | || |||||||||||||  | | |||||||||||||||| |||||| ||  | |||||| |||||||||||||||    
T  30842 tgacgtgtcatcatttaaaatctgattggcccattcaaacgacttcaccgaagaagtcattttcctgacttcatcatagaagctccca 30929  T

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Target: scaffold0338 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0338
Description:

Target: scaffold0338; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 276 - 317
Target Start/End: Complemental strand, 19011 - 18970
Alignment:
Q  276 aatcaattattcgaaagagtttagatgcaacatctccatttt 317  Q
    |||||||||||||||||||||||||||  |||||| ||||||    
T  19011 aatcaattattcgaaagagtttagatgttacatcttcatttt 18970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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