View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11046_low_2 (Length: 273)
Name: NF11046_low_2
Description: NF11046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11046_low_2 |
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| [»] scaffold0182 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 10 - 256
Target Start/End: Original strand, 48024550 - 48024796
Alignment:
| Q |
10 |
agatgaaccatgttgagattgtaactttcccgcggggattttaattactttcttccattaccattagttgaccaaatatccaaagctcgtgacaacgcta |
109 |
Q |
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| T |
48024550 |
agatgaaccatgttgagattgtaactttcccgcggggattttaattactttcttccattaccattagttgaccaaatatccaaagctcgtgagaacgcta |
48024649 |
T |
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| Q |
110 |
ccgccgccgcttctctcctccgtcagtttaatcgcaccgaaatggaagtggaagtaaagctacgtctcgcaaacgccgaagctcatcgccaagtcaccgc |
209 |
Q |
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| T |
48024650 |
ccgccgcggcttctctcctccgtcagtttaatcgcaccgaaatggaagtggaagtaaagctacgtctcgcaaacgccgaagctcatcgccaagtcaccgc |
48024749 |
T |
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| Q |
210 |
tttgctctctcccttccacgtcatcacccatcatcaacacaaccact |
256 |
Q |
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| T |
48024750 |
tttgctctctcccttccacgtcatcacccatcatcaacacaaccact |
48024796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 69 - 256
Target Start/End: Original strand, 51934213 - 51934400
Alignment:
| Q |
69 |
accattagttgaccaaatatccaaagctcgtgacaacgctaccgccgccgcttctctcctccgtcagtttaatcgcaccgaaatggaagtggaagtaaag |
168 |
Q |
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| T |
51934213 |
accatgagttgaccaaatatccaaagctcgtgacaacgctaccgccgccacttctctcctctgtcagtttaatcgcactgaaatggaagtggaagtaaag |
51934312 |
T |
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| Q |
169 |
ctacgtctcgcaaacgccgaagctcatcgccaagtcaccgctttgctctctcccttccacgtcatcacccatcatcaacacaaccact |
256 |
Q |
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| T |
51934313 |
ctacgtctcgcaaacgccgaagctcatcgccaagtcaccgctttgctctctcccttccacgtcatcacccatcatcaacacaaccact |
51934400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0182 (Bit Score: 84; Significance: 6e-40; HSPs: 2)
Name: scaffold0182
Description:
Target: scaffold0182; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 69 - 164
Target Start/End: Original strand, 13422 - 13517
Alignment:
| Q |
69 |
accattagttgaccaaatatccaaagctcgtgacaacgctaccgccgccgcttctctcctccgtcagtttaatcgcaccgaaatggaagtggaagt |
164 |
Q |
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| T |
13422 |
accatgagttgaccaaatatccaaagctcgtgacaacgctaccgccgccgtttctctcctctgtcagtttaatcgcaccgaaatggaagtggaagt |
13517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0182; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 200 - 256
Target Start/End: Original strand, 13514 - 13570
Alignment:
| Q |
200 |
aagtcaccgctttgctctctcccttccacgtcatcacccatcatcaacacaaccact |
256 |
Q |
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| T |
13514 |
aagtcaccgctttgctctctcccttccacgtcatcacccatcatcaacacaaccact |
13570 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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