View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11047_low_1 (Length: 471)
Name: NF11047_low_1
Description: NF11047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11047_low_1 |
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| [»] scaffold0025 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 350; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 18 - 462
Target Start/End: Complemental strand, 45420054 - 45419590
Alignment:
| Q |
18 |
gttaatggtggatgcaaacacaagatggggtatttaccttttggatttggagggagaatgtgtgttggtagaaacttgacatttatggagtacaagatag |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45420054 |
gttaatggtggatgcaaacacaagatggggtatttaccttttggatttggagggagaatgtgtgttggtagaaacttgacatttatggagtacaagatag |
45419955 |
T |
|
| Q |
118 |
tgttaacaatacttctctctaacttcacttttaaggtttcgccaagttatcaacattcaccagccatcatgctctccctaaggccagctcatggacttcc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||| || ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45419954 |
tgttaacaatacttctctctaacttcacttttaaggtttcgccaggttaccatcattcaccagccatcatgctctccctaaggccagctcatggacttcc |
45419855 |
T |
|
| Q |
218 |
tctcattgttcaaccccttaattaggataatc--tagaggatatcttcaactgaattctacattg--------atgttctttgtttcttagttttatctg |
307 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |
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| T |
45419854 |
tctcattgttcaaccccttaattaggataatctatagaggatatcttcaactgaattctacactgtaatgtctttgttctttgtttcttagttttatctg |
45419755 |
T |
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| Q |
308 |
tagaagggcataagttgtct----------tagtttttcaagctaatatggatttcaggaatccttctaccattgccacaataaagatgtactaaggttt |
397 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
45419754 |
tagaagggcataagttgtcttagtcttaactagtttttcaagctaatatggattttaggtatccttctaccattgccacaataaagatgtactaaggttt |
45419655 |
T |
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| Q |
398 |
catctgcaataaaaatgattgacttcactgtgacgcatgggcaccacctcccattttcttcttct |
462 |
Q |
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| T |
45419654 |
catctgcaataaaaatggttgacttcaatgtgacgcatgtgcaccacctcccattttcttcttct |
45419590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 18 - 246
Target Start/End: Complemental strand, 45410745 - 45410517
Alignment:
| Q |
18 |
gttaatggtggatgcaaacacaagatggggtatttaccttttggatttggagggagaatgtgtgttggtagaaacttgacatttatggagtacaagatag |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45410745 |
gttaatggtggatgcaaacacaagatggggtatttaccttttggatttggagggagaatgtgtgttggtagaaacttgacatttatggagtacaagatag |
45410646 |
T |
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| Q |
118 |
tgttaacaatacttctctctaacttcacttttaaggtttcgccaagttatcaacattcaccagccatcatgctctccctaaggccagctcatggacttcc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45410645 |
tgttaacaatacttctctctaacttcacttttaaggtttcgccaagttatcaacattcaccagccatcatgctctccctaaggccagctcatggacttcc |
45410546 |
T |
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| Q |
218 |
tctcattgttcaaccccttaattaggata |
246 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
45410545 |
actcattgttcaaccccttaattaggata |
45410517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 21 - 229
Target Start/End: Complemental strand, 29799806 - 29799598
Alignment:
| Q |
21 |
aatggtggatgcaaacacaagatggggtatttaccttttggatttggagggagaatgtgtgttggtagaaacttgacatttatggagtacaagatagtgt |
120 |
Q |
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|||||||||||||| || || ||||| || |||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |||||||||| |
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| T |
29799806 |
aatggtggatgcaaccaaaaaatgggatacttaccttttggatttggaggaagaatgtgtgttggtagaaacttgagctttatggagtataagatagtgt |
29799707 |
T |
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| Q |
121 |
taacaatacttctctctaacttcacttttaaggtttcgccaagttatcaacattcaccagccatcatgctctccctaaggccagctcatggacttcctct |
220 |
Q |
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|||| | |||||||||| || | |||||| |||| |||| |||| |||||||| || |||||||| |||||||||||| ||||||||||||| |
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| T |
29799706 |
taacccttcttctctctagatttagttttaatatttccccaaattatattcattcaccttgtattatgctctcactaaggccagcttatggacttcctct |
29799607 |
T |
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| Q |
221 |
cattgttca |
229 |
Q |
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|| ||||| |
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| T |
29799606 |
aatcgttca |
29799598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 18 - 277
Target Start/End: Complemental strand, 26835245 - 26834986
Alignment:
| Q |
18 |
gttaatggtggatgcaaacacaagatggggtatttaccttttggatttggagggagaatgtgtgttggtagaaacttgacatttatggagtacaagatag |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26835245 |
gttaatggtggatgcaaacacaagatggggtatttaccttttggatttggagggagaatgtgtgttggtagaaacttgacatttatggagtacaagatag |
26835146 |
T |
|
| Q |
118 |
tgttaacaatacttctctctaacttcacttttaaggtttcgccaagttatcaacattcaccagccatcatgctctccctaaggccagctcatggacttcc |
217 |
Q |
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| |||||||| ||||||||||||||||||||||||||||||||| |||| || ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26835145 |
tattaacaatgcttctctctaacttcacttttaaggtttcgccaggttaccatcattcaccagccatcatgctctccctaaggccagctcatggacttcc |
26835046 |
T |
|
| Q |
218 |
tctcattgttcaaccccttaattaggataatctagaggatatcttcaactgaattctaca |
277 |
Q |
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| T |
26835045 |
tctcattgttcaaccccttaattaggataatctagaggatatcttcaactcaattctaca |
26834986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 328 - 462
Target Start/End: Complemental strand, 26834946 - 26834812
Alignment:
| Q |
328 |
tagtttttcaagctaatatggatttcaggaatccttctaccattgccacaataaagatgtactaaggtttcatctgcaataaaaatgattgacttcactg |
427 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26834946 |
tagtttttcaagctaatatggattttaggaatccttctaccattgccacaataaagatgtactaaggtttcatctgcaataaaaatgattgacttcactg |
26834847 |
T |
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| Q |
428 |
tgacgcatgggcaccacctcccattttcttcttct |
462 |
Q |
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||||||||| ||||||||||||||||||||||||| |
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| T |
26834846 |
tgacgcatgtgcaccacctcccattttcttcttct |
26834812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0025 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0025
Description:
Target: scaffold0025; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 42 - 133
Target Start/End: Complemental strand, 63548 - 63457
Alignment:
| Q |
42 |
atggggtatttaccttttggatttggagggagaatgtgtgttggtagaaacttgacatttatggagtacaagatagtgttaacaatacttct |
133 |
Q |
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|||||||| || |||||||| |||||||||||| ||| ||||||| ||||||| || |||||||| || ||||||||||| ||||||| |
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| T |
63548 |
atggggtacttgccttttggttttggagggagagcatgtattggtaggaacttgatcttcatggagtataacatagtgttaaccctacttct |
63457 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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