View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11047_low_2 (Length: 446)
Name: NF11047_low_2
Description: NF11047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11047_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 1 - 413
Target Start/End: Complemental strand, 1702158 - 1701746
Alignment:
| Q |
1 |
ttctactatatgacgatgtttgcgttctgcaataccaatatgttcgggagtgtacggtgggctgatatcgtgagatataccatgagagttaagatatggc |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
1702158 |
ttctactatatgacgatgtttgcgttctgcaataccaatatgttcgggagtgtacggtgggctgatatagtgagatataccatgagagttaagatatggc |
1702059 |
T |
|
| Q |
101 |
ttgagttttatgtattcagtgccaccatcggtgtagagggatttaactttgtatgaaaacatagtttcaacttttgaatgaaaatttggaaatatagtaa |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1702058 |
ttgagttttatgtattcagtgccaccatcggtgtagagggatttaactttgtatgaaaacatagtttcaacttttgaatgaaaatttggaaatatagtaa |
1701959 |
T |
|
| Q |
201 |
caacatcagttttactttttaacagataaatccaagaatattgagtaaaatgatcaacaaacacaagataatatttgtaaccattaactgaagtgatagg |
300 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
1701958 |
caacatcagttttactttttaacggataaatccaagaatatcgagtaaaatgatcaacaaacacaagataatatttgtaaccatgaactgaagtgatagg |
1701859 |
T |
|
| Q |
301 |
agaaggtccccaaacatcagaaaataacagttcaagaggagctacggttttgatagaagaaactgaaaaaggaagcttatgacttttattaatatgacaa |
400 |
Q |
| |
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||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |
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| T |
1701858 |
agagggtccccaaacatcagaaaataacagttcaagaggagctgtggttttgatagaagaaacagaaaaaggaagcttatgacttttattaatatggcaa |
1701759 |
T |
|
| Q |
401 |
gaattacaatgaa |
413 |
Q |
| |
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||||||||||||| |
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| T |
1701758 |
gaattacaatgaa |
1701746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 112; Significance: 2e-56; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 298 - 413
Target Start/End: Complemental strand, 181434 - 181319
Alignment:
| Q |
298 |
aggagaaggtccccaaacatcagaaaataacagttcaagaggagctacggttttgatagaagaaactgaaaaaggaagcttatgacttttattaatatga |
397 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
181434 |
aggagaaggtccccaaacatcagaaaataacagttcaagaggagctgcggttttgatagaagaaactgaaaaaggaagcttatgacttttattaatatga |
181335 |
T |
|
| Q |
398 |
caagaattacaatgaa |
413 |
Q |
| |
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|||||||||||||||| |
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| T |
181334 |
caagaattacaatgaa |
181319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 411
Target Start/End: Complemental strand, 5400894 - 5400484
Alignment:
| Q |
1 |
ttctactatatgacgatgtttgcgttctgcaataccaatatgttcgggagtgtacggtgggctgatatcgtgagatataccatgagagttaagatatggc |
100 |
Q |
| |
|
|||||||||||| || ||||||||||| ||||| ||||| ||||| ||||| || |||||||| || | || ||||| ||||| | || | ||||||| |
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| T |
5400894 |
ttctactatatggcggtgtttgcgttcagcaatgccaatgtgttcaggagtataaggtgggctaatgtaatgggatattccatgtgtattgaaatatggc |
5400795 |
T |
|
| Q |
101 |
ttgagttttatgtattcagtgccaccatcggtgtagagggatttaactttgtatgaaaacatagtttcaacttttgaatgaaaatttggaaatatagtaa |
200 |
Q |
| |
|
|||||||| | ||||||||| |||||||| ||||| | ||||| ||||||| || || | |||||| ||| |||||||| | |||||||| || |
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|
| T |
5400794 |
ttgagtttaaagtattcagttccaccatcagtgtaaatagatttgactttgtgggagaaaaagttttcaattttagaatgaaattgaggaaatatgatag |
5400695 |
T |
|
| Q |
201 |
caacatcagttttactttttaacagataaatccaagaatattgagtaaaatgatcaacaaacacaagataatatttgtaaccattaactgaagtgatagg |
300 |
Q |
| |
|
| ||||||||||| |||| | |||||||||| | || |||| ||||| |||||||| ||||||||||| |||||||||||| || || ||||| |
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| T |
5400694 |
ctacatcagttttgtttttaagtggataaatccacgtgtagcgagtgaaatggtcaacaaagacaagataatacctgtaaccattaatggacgttatagg |
5400595 |
T |
|
| Q |
301 |
agaaggtccccaaacatcagaaaataacagttcaagaggagctacggttttgatagaagaaactgaaaaaggaagcttatgacttttattaatatgacaa |
400 |
Q |
| |
|
|| ||||||||||||||||| || | ||||||| |||| | |||| || ||||| | ||||||||||| |||||||||||||||||| || |
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| T |
5400594 |
ggatggtccccaaacatcagagaaaatgagttcaaatggagagaaagtttgtattgaagatatagaaaaaggaagtttatgacttttattaatagagcag |
5400495 |
T |
|
| Q |
401 |
gaattacaatg |
411 |
Q |
| |
|
||||||||||| |
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|
| T |
5400494 |
gaattacaatg |
5400484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 411
Target Start/End: Complemental strand, 3541869 - 3541459
Alignment:
| Q |
1 |
ttctactatatgacgatgtttgcgttctgcaataccaatatgttcgggagtgtacggtgggctgatatcgtgagatataccatgagagttaagatatggc |
100 |
Q |
| |
|
|||||||||||| || ||||||||||| ||||| ||||| ||||| ||||| || |||||||| || | || ||||| ||||| | || | ||||||| |
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| T |
3541869 |
ttctactatatggcggtgtttgcgttcagcaatgccaatgtgttcaggagtataaggtgggctaatgtaatgggatattccatgtgtattgaaatatggc |
3541770 |
T |
|
| Q |
101 |
ttgagttttatgtattcagtgccaccatcggtgtagagggatttaactttgtatgaaaacatagtttcaacttttgaatgaaaatttggaaatatagtaa |
200 |
Q |
| |
|
|||||||| | ||||||||| |||||||| ||||| | ||||| ||||||| || || | |||||| ||| |||||||| | |||||||| || |
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|
| T |
3541769 |
ttgagtttaaagtattcagttccaccatcagtgtaaatagatttgactttgtgggagaaaaagttttcaattttagaatgaaattgaggaaatatgatag |
3541670 |
T |
|
| Q |
201 |
caacatcagttttactttttaacagataaatccaagaatattgagtaaaatgatcaacaaacacaagataatatttgtaaccattaactgaagtgatagg |
300 |
Q |
| |
|
| ||||||||||| |||| | |||||||||| | || |||| ||||| |||||||| ||||||||||| ||||||||||| | || || ||||| |
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|
| T |
3541669 |
ctacatcagttttgtttttaagtggataaatccacgtgtagcgagtgaaatggtcaacaaagacaagataatacttgtaaccattgatggacgttatagg |
3541570 |
T |
|
| Q |
301 |
agaaggtccccaaacatcagaaaataacagttcaagaggagctacggttttgatagaagaaactgaaaaaggaagcttatgacttttattaatatgacaa |
400 |
Q |
| |
|
|| ||||||||||||||||| || | ||||||| |||| | |||| || ||||| | ||||||||||| |||||||||||||||||| || |
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|
| T |
3541569 |
ggatggtccccaaacatcagagaaaatgagttcaaatggagagaaagtttgtattgaagatatagaaaaaggaagtttatgacttttattaatagagcag |
3541470 |
T |
|
| Q |
401 |
gaattacaatg |
411 |
Q |
| |
|
||||||||||| |
|
|
| T |
3541469 |
gaattacaatg |
3541459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 210 - 340
Target Start/End: Complemental strand, 31098935 - 31098805
Alignment:
| Q |
210 |
ttttactttttaacagataaatccaagaatattgagtaaaatgatcaacaaacacaagataatatttgtaaccattaactgaagtgataggagaaggtcc |
309 |
Q |
| |
|
|||||||||||| |||||||||| |||| ||||||||||||||| |||||||||||||||||||| ||| | | | | || ||||| |||| |
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|
| T |
31098935 |
ttttactttttaggggataaatccatttatatctagtaaaatgatcaacgaacacaagataatatttgtatccactgatagtgttaattggagagggtct |
31098836 |
T |
|
| Q |
310 |
ccaaacatcagaaaataacagttcaagagga |
340 |
Q |
| |
|
||||||||||||||| | |||||||||||| |
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|
| T |
31098835 |
ccaaacatcagaaaaaatgagttcaagagga |
31098805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 5 - 321
Target Start/End: Original strand, 26592284 - 26592600
Alignment:
| Q |
5 |
actatatgacgatgtttgcgttctgcaataccaatatgttcgggagtgtacggtgggctgatatcgtgagatataccatgagagttaagatatggcttga |
104 |
Q |
| |
|
|||||||| | |||||||||||||||||| ||||||||||| |||||||| ||||| || || | || ||||| ||||| | || | ||| | |||| |
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|
| T |
26592284 |
actatatggcaatgtttgcgttctgcaatgccaatatgttcaggagtgtaaggtggacttatgtaatgtgatattccatgtgtattgaaataagatttga |
26592383 |
T |
|
| Q |
105 |
gttttatgtattcagtgccaccatcggtgtagagggatttaactttgtatgaaaacatagtttcaacttttgaatgaaaatttggaaatatagtaacaac |
204 |
Q |
| |
|
||| || |||||||| |||||||| ||||| | ||||| || |||| || || | | |||||| ||| | |||||| | ||| || || | || || |
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|
| T |
26592384 |
gttagatatattcagttccaccatctgtgtaaattgattttaccttgttggagaaaagattttcaattttagtatgaaattgtgggaagatggctactac |
26592483 |
T |
|
| Q |
205 |
atcagttttactttttaacagataaatccaagaatattgagtaaaatgatcaacaaacacaagataatatttgtaaccattaactgaagtgataggagaa |
304 |
Q |
| |
|
|| |||||| ||| | | |||||||||| | |||| |||||| || ||||||||||||||||| ||| | |||||||||| || || ||||| || |
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|
| T |
26592484 |
attagttttgcttctaagaggataaatccatgtatatctagtaaagtggtcaacaaacacaagatagtatctataaccattaatggatgttataggggat |
26592583 |
T |
|
| Q |
305 |
ggtccccaaacatcaga |
321 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
26592584 |
ggtccccaaacatcaga |
26592600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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