View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11048_high_12 (Length: 435)
Name: NF11048_high_12
Description: NF11048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11048_high_12 |
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Alignment Details
Target: chr6 (Bit Score: 352; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 1 - 411
Target Start/End: Original strand, 6778696 - 6779099
Alignment:
| Q |
1 |
gaaggccgagaacaactaatgcacatgtgtaaccaaatatgtattcattttaggttatctttaatgagagaagaggatcatcacctttcacactcttgaa |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6778696 |
gaaggccgagaacaactaatgcacatgtgtaaccaaatatgtattcattttaggttatctttaatgagagaagaggatcatcacctttcacactcttgaa |
6778795 |
T |
|
| Q |
101 |
ctttcttgcatttggtgcaacaccatcgcttcctagacactactggtttacagcagtgcatgcatgaatactgcaagtgtgccacaatgaagttttgctt |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
6778796 |
ctttcttgcatttggtgcaacaccatcgcttcctagacactactggtttacagcagtgcatgcatgaatactgcaagtgtgccacaataaagttttgctt |
6778895 |
T |
|
| Q |
201 |
cgtaggcaatataatttggccgagctgatagatattaattgaaaaggaaaaggaagaaagatcagattacgcagacatataatgtaaacattgtaaaaga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6778896 |
cgtaggcaatataatttggccgagctgatagatattgattgaaaaggaaaaggaagaaagatcagattacgcagacatataatgtaaacattgtaaaaga |
6778995 |
T |
|
| Q |
301 |
gaagtcagtaatgtcccgaatgcgttaatgcagcagggaatccagttttttaatacaattagatgaagttaaaagagaaggttgacataccttttgcatc |
400 |
Q |
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| T |
6778996 |
gaagtcagtaatgtcccgaatgcgttaatgcagcagggaat-cag------aatgtctttcgatgaagttaaaagagaaggttgacataccttttgcatc |
6779088 |
T |
|
| Q |
401 |
accagaatgtc |
411 |
Q |
| |
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||||||||||| |
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| T |
6779089 |
accagaatgtc |
6779099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 83 - 411
Target Start/End: Complemental strand, 6669739 - 6669416
Alignment:
| Q |
83 |
acctttcacactcttgaactttcttgcatttggtgcaacaccatcgcttcctagacactactggtttacagcagtgcatgcatgaatactgcaagtgtgc |
182 |
Q |
| |
|
||||||| ||||| ||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |
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| T |
6669739 |
acctttcgcactcctgaactttcttgcatttggagcaacaccatcgcttcctagacactattggttcacagcagtgcatgcatgaatactgcaagtgtgc |
6669640 |
T |
|
| Q |
183 |
cacaatgaagttttgcttcgtaggcaatataatttggccgagctgatagatattaattgaaaaggaaaaggaagaaagatcagattacgcagacata--t |
280 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||| | |
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| T |
6669639 |
tacaatgaagttttgcttcgtaggcaatataatttggccgagctgatagatattgatcgaaaaagaaaaggaagaaagatcagattacgcagacatatgt |
6669540 |
T |
|
| Q |
281 |
aatgtaaacattgtaaaagagaagtcagtaatgtcccgaatgcgttaatgcagcagggaatccagttttttaatacaattagatgaagttaaaagagaag |
380 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||| ||||||||||||||| |||||| |
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| T |
6669539 |
aatgtaaacattgtaaaagagaagtcagtaatgtcccaaatgcgttaatgcagcagggaat-cag------aatgtctttagatgaagttaaaggagaag |
6669447 |
T |
|
| Q |
381 |
gttgacataccttttgcatcaccagaatgtc |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
6669446 |
tttgacataccttttgcatcaccagaatgtc |
6669416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 83 - 221
Target Start/End: Complemental strand, 6680624 - 6680486
Alignment:
| Q |
83 |
acctttcacactcttgaactttcttgcatttggtgcaacaccatcgcttcctagacactactggtttacagcagtgcatgcatgaatactgcaagtgtgc |
182 |
Q |
| |
|
||||||||||||| |||| ||||||||||| |||||| |||| ||||||| ||| |||| || || |||||||||||||||||| ||||||| || |
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| T |
6680624 |
acctttcacactcctgaaatttcttgcattcagtgcaaaaccaacgcttcccagaaactatcacttcacggcagtgcatgcatgaatatcgcaagtgagc |
6680525 |
T |
|
| Q |
183 |
cacaatgaagttttgcttcgtaggcaatataatttggcc |
221 |
Q |
| |
|
|| | |||||||| || |||||||||||| ||||||| |
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| T |
6680524 |
tacgaggaagttttcttttgtaggcaatatattttggcc |
6680486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 6669790 - 6669750
Alignment:
| Q |
1 |
gaaggccgagaacaactaatgcacatgtgtaaccaaatatg |
41 |
Q |
| |
|
|||||| ||||||||||| |||||||||||||||||||||| |
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|
| T |
6669790 |
gaaggcagagaacaactagtgcacatgtgtaaccaaatatg |
6669750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 83 - 221
Target Start/End: Complemental strand, 49882797 - 49882659
Alignment:
| Q |
83 |
acctttcacactcttgaactttcttgcatttggtgcaacaccatcgcttcctagacactactggtttacagcagtgcatgcatgaatactgcaagtgtgc |
182 |
Q |
| |
|
||||||||||||| |||| ||||||||||| |||||| |||||||||||| |||||||| || | |||||| |||||||||||||||||||| || |
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| T |
49882797 |
acctttcacactcctgaaatttcttgcattcagtgcaaaaccatcgcttcccagacactatcacttcatggcagtgtatgcatgaatactgcaagtgagc |
49882698 |
T |
|
| Q |
183 |
cacaatgaagttttgcttcgtaggcaatataatttggcc |
221 |
Q |
| |
|
| |||||||||| | | ||||||||||| ||||||| |
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|
| T |
49882697 |
tatgatgaagttttccctggtaggcaatatcttttggcc |
49882659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 83 - 221
Target Start/End: Complemental strand, 46523181 - 46523043
Alignment:
| Q |
83 |
acctttcacactcttgaactttcttgcatttggtgcaacaccatcgcttcctagacactactggtttacagcagtgcatgcatgaatactgcaagtgtgc |
182 |
Q |
| |
|
||||||| ||||| |||| || |||||||| |||||| |||||||||||| |||||||| || || |||||| ||||||| ||| |||||||| || |
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| T |
46523181 |
acctttcgcactcctgaatttccttgcattcagtgcaaaaccatcgcttcccagacactatcacttcacggcagtgtatgcatgcatattgcaagtgagc |
46523082 |
T |
|
| Q |
183 |
cacaatgaagttttgcttcgtaggcaatataatttggcc |
221 |
Q |
| |
|
| || |||| ||| | | |||||| ||||| ||||||| |
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|
| T |
46523081 |
tataaggaagctttccctggtaggccatatattttggcc |
46523043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 370 - 411
Target Start/End: Complemental strand, 49882476 - 49882435
Alignment:
| Q |
370 |
taaaagagaaggttgacataccttttgcatcaccagaatgtc |
411 |
Q |
| |
|
||||||| ||||| ||||||| |||||||||||||||||||| |
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|
| T |
49882476 |
taaaagacaaggtagacatactttttgcatcaccagaatgtc |
49882435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 83 - 221
Target Start/End: Original strand, 36847023 - 36847161
Alignment:
| Q |
83 |
acctttcacactcttgaactttcttgcatttggtgcaacaccatcgcttcctagacactactggtttacagcagtgcatgcatgaatactgcaagtgtgc |
182 |
Q |
| |
|
||||||||||||| |||| |||||||||| |||||| |||||||||||| |||||||| || | |||||| ||||||||| | ||||||| || |
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|
| T |
36847023 |
acctttcacactcctgaaacttcttgcattcagtgcaaaaccatcgcttcccagacactatcacttcatggcagtgtatgcatgaagatcgcaagtgagc |
36847122 |
T |
|
| Q |
183 |
cacaatgaagttttgcttcgtaggcaatataatttggcc |
221 |
Q |
| |
|
|| | |||||||| || |||||||||||| ||||||| |
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|
| T |
36847123 |
tacgaggaagttttcttttgtaggcaatatattttggcc |
36847161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 83 - 142
Target Start/End: Original strand, 6161479 - 6161538
Alignment:
| Q |
83 |
acctttcacactcttgaactttcttgcatttggtgcaacaccatcgcttcctagacacta |
142 |
Q |
| |
|
||||||||||||| |||| |||||||||| |||||| |||||||||||| |||||||| |
|
|
| T |
6161479 |
acctttcacactcctgaaacttcttgcattcagtgcaaaaccatcgcttcccagacacta |
6161538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 370 - 411
Target Start/End: Original strand, 36847282 - 36847323
Alignment:
| Q |
370 |
taaaagagaaggttgacataccttttgcatcaccagaatgtc |
411 |
Q |
| |
|
||||||||||| | ||||||| |||||||||||||||||||| |
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|
| T |
36847282 |
taaaagagaagatagacatactttttgcatcaccagaatgtc |
36847323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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