View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11048_high_14 (Length: 390)
Name: NF11048_high_14
Description: NF11048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11048_high_14 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 14 - 372
Target Start/End: Original strand, 2573212 - 2573570
Alignment:
| Q |
14 |
atggacatcaattatgttcgagcaagagtagaggaaggtgggattgaagtagatcagctatttttccatgacccagatggtttcatgattgagatatgca |
113 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2573212 |
atggaaatcaattatgttcgagcaagagtagaggaaggtgggattgaagtagatcagctatttttccatgacccagatggtttcatgattgagatatgca |
2573311 |
T |
|
| Q |
114 |
attgtgatagtcttcctgtgattccattagttggtgaagtagcaagatcatgctcacgtttgaatcttcacataatgcagaatcagaatcagaatcagca |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2573312 |
attgtgatagtcttcctgtgattccattagttggtgaagtagcaagatcatgctcacgtttgaatcttcacataatgcagaatcagaatcagaatcagca |
2573411 |
T |
|
| Q |
214 |
gaatcagatacataagattgttaagtgattattgtgatgtgaccaagcatctttgtgggggaaatgtatcatgtatgatgagtcatgaaattgtacttct |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2573412 |
gaatcagatacataagattgttaagtgattattgtgatgtgaccaagcatctttgtggggaaaatgtatcatgtatgatgagtcatgaaattgtacttct |
2573511 |
T |
|
| Q |
314 |
tttttcttttgttgttgctttctagttgtcaatttatgatgttgttccttatatgttaa |
372 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2573512 |
tttttcttttgttgttgctttctagttgtcaatttatgatgttgttccttatatgttaa |
2573570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 60 - 149
Target Start/End: Original strand, 51845979 - 51846068
Alignment:
| Q |
60 |
aagtagatcagctatttttccatgacccagatggtttcatgattgagatatgcaattgtgatagtcttcctgtgattccattagttggtg |
149 |
Q |
| |
|
|||| |||||| | ||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||| |||| ||||| |
|
|
| T |
51845979 |
aagtggatcagttgttttttcatgacccagatggattcatgattgagatatgcaattgtgatagtctccctgttattcctttagctggtg |
51846068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 74 - 168
Target Start/End: Complemental strand, 44555496 - 44555402
Alignment:
| Q |
74 |
tttttccatgacccagatggtttcatgattgagatatgcaattgtgatagtcttcctgtgattccattagttggtgaagtagcaagatcatgctc |
168 |
Q |
| |
|
||||| |||||||||||||| || |||||||| |||||||||||||||||||||||||| ||||| |||| ||||||| | | ||||||||||| |
|
|
| T |
44555496 |
ttttttcatgacccagatggatttatgattgaaatatgcaattgtgatagtcttcctgttattcccttagctggtgaaatggttagatcatgctc |
44555402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 74 - 126
Target Start/End: Complemental strand, 44544854 - 44544802
Alignment:
| Q |
74 |
tttttccatgacccagatggtttcatgattgagatatgcaattgtgatagtct |
126 |
Q |
| |
|
||||| |||||||||||||| || |||||||| |||||||||||||||||||| |
|
|
| T |
44544854 |
ttttttcatgacccagatggatttatgattgaaatatgcaattgtgatagtct |
44544802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University