View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11048_high_15 (Length: 380)
Name: NF11048_high_15
Description: NF11048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11048_high_15 |
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Alignment Details
Target: chr1 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 18 - 371
Target Start/End: Original strand, 41738296 - 41738649
Alignment:
| Q |
18 |
aagaatgtcaaaacatcaaatctagatattgaagatcaaggcaaccgattaatttactatatagtggtattttattaagagtatattgttactattactt |
117 |
Q |
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| T |
41738296 |
aagaatgtcaaaacatcaaatctagatattgaagatcaaggcaaccgatta-tttactatatagtggtattttattaagagtatattgttactattactt |
41738394 |
T |
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| Q |
118 |
tt-tacgtgttgctaacattagcattgttcattattcaatgattggatcgtaattgaagattttacaaagttgagaacactataaaataatacaattttt |
216 |
Q |
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| T |
41738395 |
ttttacgtgttgctaacattagcattgttcattattcaatgattgggtcgtaattgaagattttacaaagttgagaacactataaaataatacaattttt |
41738494 |
T |
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| Q |
217 |
cttaaggatcagcgaattttctcttcaaattggattgcaccatttggtaaacagcaaaccaaccattttcccaaaagaatgaaagttctggtttatcaca |
316 |
Q |
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| T |
41738495 |
cttaaggatcaacgaattttctcttcaaattggattgcaccatttggtaaacagcaaaccaaccattttcccaaaagaatgaaagttctggtttatcaca |
41738594 |
T |
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| Q |
317 |
tacaacacttccacaaaacatacctcccacacaacatggttgcaacggattcatc |
371 |
Q |
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| T |
41738595 |
tacaacacttccacaaaacatacctcccacacaacatggttgcaacggattcatc |
41738649 |
T |
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