View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11048_high_16 (Length: 377)

Name: NF11048_high_16
Description: NF11048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11048_high_16
NF11048_high_16
[»] chr4 (9 HSPs)
chr4 (18-290)||(47292305-47292577)
chr4 (18-233)||(56209622-56209838)
chr4 (298-369)||(47291920-47291991)
chr4 (88-230)||(45863436-45863579)
chr4 (88-221)||(45883384-45883518)
chr4 (18-127)||(54303383-54303492)
chr4 (306-365)||(47288412-47288472)
chr4 (18-51)||(45863240-45863273)
chr4 (18-51)||(45882639-45882672)
[»] chr8 (1 HSPs)
chr8 (18-228)||(7973531-7973742)
[»] chr5 (2 HSPs)
chr5 (58-233)||(10520217-10520393)
chr5 (177-240)||(35803584-35803647)
[»] chr2 (1 HSPs)
chr2 (88-232)||(24348395-24348540)


Alignment Details
Target: chr4 (Bit Score: 257; Significance: 1e-143; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 18 - 290
Target Start/End: Complemental strand, 47292577 - 47292305
Alignment:
Q  18 ttcttcacatgcacaagcaatgtaatattcttttcctcctattgcaggaacataagcaacaataagttttcctgattttctgaaattcatgatttccctt 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  47292577 ttcttcacatgcacaagcaatgtaatattcttttcctcctattgcagggacataagcaacaataagttttcctgattttctgaaattcatgatttccttt 47292478  T
Q  118 cgaatttcatgagtttagcccaaccgcaatttaaacgataaatatgaagacacactgcagaaatacgatgatcatatgcggctttcaacaaattatcgca 217  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47292477 cgaatttcatgagtttagcccaaccacaatttaaacgataaatatgaagacacactgcagaaatacgatgatcatatgcggctttcaacaaattatcgca 47292378  T
Q  218 aattcgaggcagagatgatacctcaccatggtgctcaggtatctggccgctcaaatcaatttgcaagacgctg 290  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  47292377 aattcgaggcagagatgatacctcaccatggtgctcagatatctggccgctcaaatcaatttgcaagacgctg 47292305  T

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Target: chr4; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 18 - 233
Target Start/End: Original strand, 56209622 - 56209838
Alignment:
Q  18 ttcttcacatgcacaagcaatgtaatattcttttcctcctattgcaggaacataagcaacaataagttttcctgattttctgaaattcatgatttccctt 117  Q
    |||||||||| ||||||||||||||||||||||  |||| |||| || ||||||||| |||| |||||| || |||||||||||||| | ||||| ||||    
T  56209622 ttcttcacatacacaagcaatgtaatattctttaactccaattgaagtaacataagccacaacaagtttaccagattttctgaaatttaagatttgcctt 56209721  T
Q  118 cgaatttcat-gagtttagcccaaccgcaatttaaacgataaatatgaagacacactgcagaaatacgatgatcatatgcggctttcaacaaattatcgc 216  Q
    |||||||||| ||||||||||||||| |||||||||  || |||| ||||| | || |||||||||||||||||||| || |||||||||| ||||||||    
T  56209722 cgaatttcatcgagtttagcccaaccacaatttaaagtatcaatacgaagatatacggcagaaatacgatgatcataagctgctttcaacatattatcgc 56209821  T
Q  217 aaattcgaggcagagat 233  Q
    ||| | |||||||||||    
T  56209822 aaaattgaggcagagat 56209838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 298 - 369
Target Start/End: Complemental strand, 47291991 - 47291920
Alignment:
Q  298 gtgcagtatcagtcgattagggcttggaaaggaaaagaatagtgtatgagcgttagcttagggtttcttctc 369  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47291991 gtgcagtatcagtcgattagggcttggaaaggaaaagaatagtgtatgagcgttagcttagggtttcttctc 47291920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 88 - 230
Target Start/End: Original strand, 45863436 - 45863579
Alignment:
Q  88 cctgattttctgaaattcatgatttcccttcgaatttcatgag-tttagcccaaccgcaatttaaacgataaatatgaagacacactgcagaaatacgat 186  Q
    ||||||||||||||||||| |||||  ||||||||||||| || |||||||||||| |||||||||  || ||| |||||| | || ||||||||||||     
T  45863436 cctgattttctgaaattcaagatttgtcttcgaatttcatcagctttagcccaaccacaatttaaattatcaatttgaagatatacggcagaaatacgag 45863535  T
Q  187 gatcatatgcggctttcaacaaattatcgcaaattcgaggcaga 230  Q
    ||||||| || ||||||||||||||||| |||||| | ||||||    
T  45863536 gatcataagctgctttcaacaaattatctcaaatttggggcaga 45863579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 88 - 221
Target Start/End: Original strand, 45883384 - 45883518
Alignment:
Q  88 cctgattttctgaaattcatgatttcccttcgaatttcat-gagtttagcccaaccgcaatttaaacgataaatatgaagacacactgcagaaatacgat 186  Q
    ||||||||||||||||| | ||| |  ||||||||||||| |||||||||||||||||||||||||   | ||| |||||| ||||  |||||||||||     
T  45883384 cctgattttctgaaatttaagatctgtcttcgaatttcatcgagtttagcccaaccgcaatttaaattgtcaatttgaagatacacaccagaaatacgag 45883483  T
Q  187 gatcatatgcggctttcaacaaattatcgcaaatt 221  Q
    ||||||| || ||||||||||||||||||||||||    
T  45883484 gatcataagctgctttcaacaaattatcgcaaatt 45883518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 18 - 127
Target Start/End: Complemental strand, 54303492 - 54303383
Alignment:
Q  18 ttcttcacatgcacaagcaatgtaatattcttttcctcctattgcaggaacataagcaacaataagttttcctgattttctgaaattcatgatttccctt 117  Q
    ||||| |||||||| ||| | |||||| |||||| |||| ||| |||| ||||||||||  |||||||||||||||||||||||||| | ||||| ||||    
T  54303492 ttctttacatgcactagcgacgtaatactcttttactccaatttcagggacataagcaaagataagttttcctgattttctgaaatttaagatttgcctt 54303393  T
Q  118 cgaatttcat 127  Q
    ||||||||||    
T  54303392 cgaatttcat 54303383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 306 - 365
Target Start/End: Complemental strand, 47288472 - 47288412
Alignment:
Q  306 tcagtcgattagggctt-ggaaaggaaaagaatagtgtatgagcgttagcttagggtttct 365  Q
    ||||||||||||||||| ||||||||||||||||||| |||||||| ||||||||| ||||    
T  47288472 tcagtcgattagggctttggaaaggaaaagaatagtgcatgagcgtgagcttagggcttct 47288412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 51
Target Start/End: Original strand, 45863240 - 45863273
Alignment:
Q  18 ttcttcacatgcacaagcaatgtaatattctttt 51  Q
    ||||||||||||||||||||||||||||| ||||    
T  45863240 ttcttcacatgcacaagcaatgtaatattatttt 45863273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 51
Target Start/End: Original strand, 45882639 - 45882672
Alignment:
Q  18 ttcttcacatgcacaagcaatgtaatattctttt 51  Q
    |||||||||||| |||||||||||||||||||||    
T  45882639 ttcttcacatgcgcaagcaatgtaatattctttt 45882672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 112; Significance: 2e-56; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 18 - 228
Target Start/End: Original strand, 7973531 - 7973742
Alignment:
Q  18 ttcttcacatgcacaagcaatgtaatattcttttcctcctattgcaggaacataagcaacaataagttttcctgattttctgaaattcatgatttccctt 117  Q
    |||||||||||||||| | ||||||||||||||||| || ||| |||  |||||||||||||||||||| ||||||||||||||||| ||||||||||||    
T  7973531 ttcttcacatgcacaacctatgtaatattcttttccacccattacagcgacataagcaacaataagtttacctgattttctgaaatttatgatttccctt 7973630  T
Q  118 cgaatttcat-gagtttagcccaaccgcaatttaaacgataaatatgaagacacactgcagaaatacgatgatcatatgcggctttcaacaaattatcgc 216  Q
     ||||||||| ||||||||| |||| ||| |||||| ||||||||  || | |||| |||||||||||| ||||||| ||||||||||||||||| ||||    
T  7973631 tgaatttcatcgagtttagctcaactgcattttaaaggataaataacaacatacacagcagaaatacgaggatcataagcggctttcaacaaattctcgc 7973730  T
Q  217 aaattcgaggca 228  Q
    ||||| ||||||    
T  7973731 aaatttgaggca 7973742  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 58 - 233
Target Start/End: Complemental strand, 10520393 - 10520217
Alignment:
Q  58 attgcaggaacataagcaacaataagttttcctgattttctgaaattcatgatttcccttcgaatttcatga-gtttagcccaaccgcaatttaaacgat 156  Q
    |||| ||| |||||||| ||||  | ||| || |||||||||||||| |  |||| |||| |||| |||| | ||||||||||||| ||| ||||| | |    
T  10520393 attgaagggacataagccacaaccattttccccgattttctgaaatttaaaatttgcctttgaatctcatcaagtttagcccaaccccaacttaaatggt 10520294  T
Q  157 aaatatgaagacacactgcagaaatacgatgatcatatgcggctttcaacaaattatcgcaaattcgaggcagagat 233  Q
      ||||||||| | || || ||||||| | |||||||||| |||||||| |||||| |||||||| |||| ||||||    
T  10520293 cgatatgaagataaacagcggaaatacaaggatcatatgctgctttcaagaaattaccgcaaatttgaggaagagat 10520217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 177 - 240
Target Start/End: Original strand, 35803584 - 35803647
Alignment:
Q  177 gaaatacgatgatcatatgcggctttcaacaaattatcgcaaattcgaggcagagatgatacct 240  Q
    ||||||||| ||||||| ||||||||||| |||| ||||||||||  |||||||||| ||||||    
T  35803584 gaaatacgaggatcataagcggctttcaagaaataatcgcaaatttcaggcagagataatacct 35803647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 232
Target Start/End: Complemental strand, 24348540 - 24348395
Alignment:
Q  88 cctgattttctgaaattcatgatttcccttcgaatttcat-gagtttagcccaaccgcaatttaaacgataaatatgaagacacactgcagaaatacgat 186  Q
    ||||||||| ||||||||| ||| | |||||||||||| |  | |||| |||| || |||| ||||| || |||||| ||| | ||  ||||||| |||     
T  24348540 cctgattttttgaaattcaagatgtgccttcgaatttcttctactttaccccacccacaatctaaactatcaatatggagatagaccccagaaattcgag 24348441  T
Q  187 gatcatatgcggctttcaacaaattatcgcaaattcgaggcagaga 232  Q
    ||||||| || |||||||| ||||| ||||| ||| |||| |||||    
T  24348440 gatcataggctgctttcaaaaaattctcgcatatttgaggtagaga 24348395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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