View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11048_high_20 (Length: 330)

Name: NF11048_high_20
Description: NF11048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11048_high_20
NF11048_high_20
[»] chr8 (1 HSPs)
chr8 (19-313)||(4243890-4244184)
[»] chr6 (2 HSPs)
chr6 (19-313)||(6186946-6187240)
chr6 (23-148)||(6170004-6170129)


Alignment Details
Target: chr8 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 19 - 313
Target Start/End: Original strand, 4243890 - 4244184
Alignment:
Q  19 caccggtcatgctcgattcatcaactctcaacgaatgtccatctacgaacaatccatcggctggtacttgatcaccaatcttcaaacaaacaacatcacc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4243890 caccggtcatgctcgattcatcaactctcaacgaatgtccatctacgaacaatccatcggctggtacttgatcaccaatcttcaaacaaacaacatcacc 4243989  T
Q  119 aacaacaatatcgaatattgataccttttgttggcgcccactacgaaccaaatcaatttgaatatcattgctcacttgagacaatttatcaaattgtttg 218  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4243990 aacaacaatatcgaatattgataccttttgtcggcgcccactacgaaccaaatcaatttgaatatcattgctcacttgagacaatttatcaaattgtttg 4244089  T
Q  219 ttttgtttaaagttgcttattgcagacattgaaataacaatgaaaacagctagaaaaatgctaccaccatcataccaaccttctttgattccatg 313  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  4244090 ttttgtttaaagttgcttattgcagacattgaaataacaatgaaaacagctagaaaaatgctgccaccatcataccaaccttctttgattccatg 4244184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 19 - 313
Target Start/End: Original strand, 6186946 - 6187240
Alignment:
Q  19 caccggtcatgctcgattcatcaactctcaacgaatgtccatctacgaacaatccatcggctggtacttgatcaccaatcttcaaacaaacaacatcacc 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||    
T  6186946 caccggtcatgctcgattcatcaactctcaacgaatgtccatctacgaacaatccatcagccggtacttgatcaccaatcttcaaacaaacaacatcacc 6187045  T
Q  119 aacaacaatatcgaatattgataccttttgttggcgcccactacgaaccaaatcaatttgaatatcattgctcacttgagacaatttatcaaattgtttg 218  Q
    |||||||||||| ||||| ||||||||| |  | || ||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||||||    
T  6187046 aacaacaatatcaaatatagatacctttagccgacgaccacttcgaaccaaatcaatttgaatgtcattgctaacttgagacaatttatcaaattgtttg 6187145  T
Q  219 ttttgtttaaagttgcttattgcagacattgaaataacaatgaaaacagctagaaaaatgctaccaccatcataccaaccttctttgattccatg 313  Q
    |||||||| |||||||||||||  ||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  6187146 ttttgtttgaagttgcttattgatgacatcgaaataacgatgaaaacagctaggaaaatgctaccaccatcataccaaccttctttgattccatg 6187240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 23 - 148
Target Start/End: Original strand, 6170004 - 6170129
Alignment:
Q  23 ggtcatgctcgattcatcaactctcaacgaatgtccatctacgaacaatccatcggctggtacttgatcaccaatcttcaaacaaacaacatcaccaaca 122  Q
    |||||||||  |||||||||||||||| |||| |||||| | ||| |||||||       ||||||||||||||| |||||| |||||||||||||||||    
T  6170004 ggtcatgcttcattcatcaactctcaaggaatttccatcgatgaataatccatttatcaatacttgatcaccaatattcaaaaaaacaacatcaccaaca 6170103  T
Q  123 acaatatcgaatattgataccttttg 148  Q
    ||||| || || || |||| ||||||    
T  6170104 acaatctcaaagatcgatatcttttg 6170129  T

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