View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11048_high_21 (Length: 311)
Name: NF11048_high_21
Description: NF11048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11048_high_21 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 158; Significance: 4e-84; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 83 - 299
Target Start/End: Original strand, 28001542 - 28001765
Alignment:
| Q |
83 |
gtgcttcaaacttgataaagatatctacatttggatatgtacaataaaaagttacttgcattttaaaaatcaatttttgtggatgggaaaataaattgaa |
182 |
Q |
| |
|
|||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |
|
|
| T |
28001542 |
gtgcttcaaactcgataaagatatctacatatggatatgcacaataaaaagttacttgcattcaacaaatcaatttttgtggatgggaaaataaattgaa |
28001641 |
T |
|
| Q |
183 |
aatagtgcatgatcatagtatactttggtttgcgagttctaccgaactcatatacaaattaggggtggccaaagaaacc-------gaatcgatctttgc |
275 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| |||||| ||| |
|
|
| T |
28001642 |
aatagtgcatgatcatagtatactttggtttgcgagttctaccgaactcatatacaaattaggggtggtcaaagaaaccaaaaactgaaccgatctctgc |
28001741 |
T |
|
| Q |
276 |
agtagctctctcgcgacccatctc |
299 |
Q |
| |
|
|| ||||||||||||||||||||| |
|
|
| T |
28001742 |
agcagctctctcgcgacccatctc |
28001765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 19 - 260
Target Start/End: Original strand, 27991421 - 27991672
Alignment:
| Q |
19 |
agcatatctatcaacc---ttctcttatttaattatgccattagtgcttcggttatttatttatgtc----gtgcttcaaacttgataaagatatctaca |
111 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||| ||||||||| ||||||| ||||||| |||||||||||| || ||||||||||||| |
|
|
| T |
27991421 |
agcatatctatcaactacattctcttatttaattatgccagtagtgcttcaattatttaattatgtcattagtgcttcaaactcgaaaaagatatctaca |
27991520 |
T |
|
| Q |
112 |
tttggatatgtacaataaaaagttacttgcatttta---aaaatcaatttttgtggatgggaaaataaattgaaaatagtgcatgatcatagtatacttt |
208 |
Q |
| |
|
|||||||||| | ||||||| |||||||||||| || |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27991521 |
tttggatatgcataataaaaggttacttgcattctactaaaaaacaatttttgtggatgggaaaataaattgaaaatagtgcatgatcatagtatacttt |
27991620 |
T |
|
| Q |
209 |
ggtttgcgagttctaccgaactcatatacaaattaggggtggccaaagaaac |
260 |
Q |
| |
|
|||||| |||||||| |||||| |||||| |||||||| || |||| |||| |
|
|
| T |
27991621 |
ggtttgtgagttctattgaactcttatacatattaggggaggacaaaaaaac |
27991672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 178 - 221
Target Start/End: Complemental strand, 24402644 - 24402601
Alignment:
| Q |
178 |
ttgaaaatagtgcatgatcatagtatactttggtttgcgagttc |
221 |
Q |
| |
|
||||||||||||||| |||||||||||||| ||||||| ||||| |
|
|
| T |
24402644 |
ttgaaaatagtgcatcatcatagtatacttaggtttgcaagttc |
24402601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University