View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11048_high_28 (Length: 243)
Name: NF11048_high_28
Description: NF11048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11048_high_28 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 18 - 243
Target Start/End: Original strand, 30769010 - 30769235
Alignment:
| Q |
18 |
atatcctcgatacgaagatggtatttcctgctcctaagaagccccaggaacgtgttgatcttattgcatatctgaaataggatgcttgaaaatgattgaa |
117 |
Q |
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| T |
30769010 |
atatcctcgatacgaagatggtatttcctgctcttaagaagccccaggaacgtgttgatcttattgcatatctgaaataggatgcttgaaaatgattgaa |
30769109 |
T |
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| Q |
118 |
gttatgtatcatatgtagtatacttttggagttctggatatttaatcatctggaaatttgatcttgcgttgtaattagcaatttagcactctatattggc |
217 |
Q |
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| T |
30769110 |
gttatgtatcatatgtagtatacttttggagttctggatatttaattatctggaaatttgatcttgcgttgtaattagcaatttagcactctatattggc |
30769209 |
T |
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| Q |
218 |
aaataaagcagacattataagtttcc |
243 |
Q |
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| T |
30769210 |
aaataaagcagacattataagtttcc |
30769235 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 32 - 94
Target Start/End: Original strand, 30772883 - 30772945
Alignment:
| Q |
32 |
aagatggtatttcctgctcctaagaagccccaggaacgtgttgatcttattgcatatctgaaa |
94 |
Q |
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| T |
30772883 |
aagatggtttttcctggtcttaagaagcctcaagaacgtgctgatcttattgcatatctgaaa |
30772945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 32 - 93
Target Start/End: Original strand, 1793114 - 1793175
Alignment:
| Q |
32 |
aagatggtatttcctgctcctaagaagccccaggaacgtgttgatcttattgcatatctgaa |
93 |
Q |
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| T |
1793114 |
aagatggtatttcccggtctaaagaaaccccaagaacgcgctgatcttattgcatatctgaa |
1793175 |
T |
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