View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11048_high_34 (Length: 211)

Name: NF11048_high_34
Description: NF11048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11048_high_34
NF11048_high_34
[»] chr1 (2 HSPs)
chr1 (20-195)||(16196-16371)
chr1 (13-195)||(7818-8000)


Alignment Details
Target: chr1 (Bit Score: 152; Significance: 1e-80; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 20 - 195
Target Start/End: Original strand, 16196 - 16371
Alignment:
Q  20 agtactttcttgaagatcttatcctacaaagaaatccatgaattggaaaatgcattggtctctcaaggaaaatataggaaataagttatggaaaacacct 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||| |||    
T  16196 agtactttcttgaagatcttatcctacaaagaaatccatgaattggaaaatgcattggtctctcaaggaaaatataggaaataagccatggaaaactcct 16295  T
Q  120 gcatgatttcagctgcttcaagaaacctctggttggtgattagaatacaattggtgtaaccatgggaggaaaaatc 195  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||  ||||||||    
T  16296 gcatgatttcagctgcttcaagaaacctctggttggtgattagaatacaaatggtgtaaccatgggcagaaaaatc 16371  T

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Target: chr1; HSP #2
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 13 - 195
Target Start/End: Original strand, 7818 - 8000
Alignment:
Q  13 gagatgaagtactttcttgaagatcttatcctacaaagaaatccatgaattggaaaatgcattggtctctcaaggaaaatataggaaataagttatggaa 112  Q
    |||||| ||||||||||||||||| |||||||||||||||||||| || |||||||||||||||||||||||||| ||||||||| ||||||  || |||    
T  7818 gagatggagtactttcttgaagattttatcctacaaagaaatccacgagttggaaaatgcattggtctctcaaggcaaatataggtaataagccattgaa 7917  T
Q  113 aacacctgcatgatttcagctgcttcaagaaacctctggttggtgattagaatacaattggtgtaaccatgggaggaaaaatc 195  Q
    ||||||||| ||||||||||||||||||||||| |||||||||||||||||||| || ||||||||||||||| || ||||||    
T  7918 aacacctgcgtgatttcagctgcttcaagaaacttctggttggtgattagaataaaaatggtgtaaccatgggcggcaaaatc 8000  T

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