View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11048_high_7 (Length: 496)

Name: NF11048_high_7
Description: NF11048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11048_high_7
NF11048_high_7
[»] chr3 (7 HSPs)
chr3 (100-314)||(13879106-13879326)
chr3 (22-65)||(21248971-21249014)
chr3 (451-481)||(13879059-13879089)
chr3 (22-67)||(16985091-16985136)
chr3 (22-67)||(33533274-33533319)
chr3 (20-64)||(6054207-6054251)
chr3 (23-67)||(38571401-38571445)
[»] chr6 (5 HSPs)
chr6 (14-67)||(4844206-4844259)
chr6 (22-67)||(20149958-20150003)
chr6 (22-67)||(22182829-22182874)
chr6 (22-67)||(26669638-26669683)
chr6 (23-67)||(10828375-10828419)
[»] chr4 (12 HSPs)
chr4 (22-67)||(54854158-54854203)
chr4 (137-195)||(24750511-24750570)
chr4 (22-67)||(39293599-39293645)
chr4 (23-67)||(11863132-11863176)
chr4 (20-67)||(12585538-12585585)
chr4 (23-53)||(23234432-23234462)
chr4 (22-67)||(33359888-33359933)
chr4 (22-67)||(35230274-35230319)
chr4 (22-67)||(49039424-49039469)
chr4 (15-67)||(23226684-23226736)
chr4 (15-67)||(49743426-49743478)
chr4 (25-61)||(54414018-54414054)
[»] chr2 (6 HSPs)
chr2 (14-67)||(20942088-20942141)
chr2 (22-67)||(34107345-34107390)
chr2 (22-65)||(1244640-1244683)
chr2 (20-49)||(32944131-32944160)
chr2 (22-67)||(35352383-35352428)
chr2 (22-67)||(39334860-39334905)
[»] chr1 (7 HSPs)
chr1 (24-67)||(27684647-27684690)
chr1 (22-65)||(9768790-9768833)
chr1 (22-59)||(9976371-9976408)
chr1 (22-67)||(23973461-23973506)
chr1 (22-67)||(33844688-33844733)
chr1 (22-67)||(33949245-33949290)
chr1 (22-67)||(38028608-38028653)
[»] chr5 (5 HSPs)
chr5 (22-67)||(20186935-20186980)
chr5 (23-64)||(3663909-3663950)
chr5 (22-67)||(11246473-11246518)
chr5 (22-67)||(18535985-18536030)
chr5 (22-67)||(37986846-37986891)
[»] chr8 (7 HSPs)
chr8 (15-67)||(39208848-39208900)
chr8 (22-67)||(220341-220386)
chr8 (22-67)||(689496-689541)
chr8 (22-67)||(733964-734009)
chr8 (22-67)||(857860-857905)
chr8 (15-67)||(12926457-12926509)
chr8 (23-59)||(44254299-44254335)
[»] scaffold0119 (1 HSPs)
scaffold0119 (22-67)||(1110-1155)
[»] scaffold0009 (1 HSPs)
scaffold0009 (15-59)||(62777-62821)
[»] chr7 (1 HSPs)
chr7 (25-65)||(32962880-32962920)


Alignment Details
Target: chr3 (Bit Score: 100; Significance: 3e-49; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 100 - 314
Target Start/End: Complemental strand, 13879326 - 13879106
Alignment:
Q  100 atacttgcaaaccaattttaactccacttacacaaat----atgtggctaattttcatt-tttgctggataaattacccacaattctttaa-gataacct 193  Q
    |||||||||||| |||||||||| |||||||| |  |    |||||||||||||||||| |||| ||||||||||||||| ||||||| || | | ||||    
T  13879326 atacttgcaaactaattttaactgcacttacatatttgtttatgtggctaattttcattctttggtggataaattacccaaaattcttgaaaggtgacct 13879227  T
Q  194 aataaaaacttttggccagaaaaatacaccaagtaatttaaaaagaatgtatatgtttgaccattattaatctatatttctgtttgtatgctcagcaaaa 293  Q
    ||||||||||||| || || |||||||||||||||||||||||||||| ||||||||||||||||||| | |||||||| |||||||||||||| |||||    
T  13879226 aataaaaacttttagctagtaaaatacaccaagtaatttaaaaagaatatatatgtttgaccattattgacctatatttatgtttgtatgctcaacaaaa 13879127  T
Q  294 aataagctccaataatcaatt 314  Q
    || |||   ||||||||||||    
T  13879126 aacaagtaacaataatcaatt 13879106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 65
Target Start/End: Complemental strand, 21249014 - 21248971
Alignment:
Q  22 cacttattcaccttgaaaaaagtgaattttagctactagactac 65  Q
    |||||||||||||||||||| ||||||| |||| ||||||||||    
T  21249014 cacttattcaccttgaaaaaggtgaattctagccactagactac 21248971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 451 - 481
Target Start/End: Complemental strand, 13879089 - 13879059
Alignment:
Q  451 tctaatggatttatgtttgtgaaattgattt 481  Q
    |||||||||||||||||||||||||||||||    
T  13879089 tctaatggatttatgtttgtgaaattgattt 13879059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 67
Target Start/End: Original strand, 16985091 - 16985136
Alignment:
Q  22 cacttattcaccttgaaaaaagtgaattttagctactagactactt 67  Q
    ||||||||||| || ||||||||||||| |||||| ||||||||||    
T  16985091 cacttattcactttaaaaaaagtgaattctagctattagactactt 16985136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 67
Target Start/End: Original strand, 33533274 - 33533319
Alignment:
Q  22 cacttattcaccttgaaaaaagtgaattttagctactagactactt 67  Q
    |||||||||||||| ||||||||||||| || | ||||||||||||    
T  33533274 cacttattcaccttaaaaaaagtgaattctaacaactagactactt 33533319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 20 - 64
Target Start/End: Complemental strand, 6054251 - 6054207
Alignment:
Q  20 ctcacttattcaccttgaaaaaagtgaattttagctactagacta 64  Q
    |||||||||||||||||||||| ||||||| || | |||||||||    
T  6054251 ctcacttattcaccttgaaaaaggtgaattctaaccactagacta 6054207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 23 - 67
Target Start/End: Complemental strand, 38571445 - 38571401
Alignment:
Q  23 acttattcaccttgaaaaaagtgaattttagctactagactactt 67  Q
    ||||||||||||||||||  ||||||| |||| ||||||||||||    
T  38571445 acttattcaccttgaaaatggtgaattctagccactagactactt 38571401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 14 - 67
Target Start/End: Original strand, 4844206 - 4844259
Alignment:
Q  14 agacaactcacttattcaccttgaaaaaagtgaattttagctactagactactt 67  Q
    ||||| |||||||||||||||||||||||||||||| || | ||||||||||||    
T  4844206 agacacctcacttattcaccttgaaaaaagtgaattctaaccactagactactt 4844259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 67
Target Start/End: Complemental strand, 20150003 - 20149958
Alignment:
Q  22 cacttattcaccttgaaaaaagtgaattttagctactagactactt 67  Q
    |||||||||||||||||||| ||||||| || ||||||| ||||||    
T  20150003 cacttattcaccttgaaaaaggtgaattctatctactagcctactt 20149958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 67
Target Start/End: Original strand, 22182829 - 22182874
Alignment:
Q  22 cacttattcaccttgaaaaaagtgaattttagctactagactactt 67  Q
    |||||||||||||||||||| ||||||| || ||||||| ||||||    
T  22182829 cacttattcaccttgaaaaaggtgaattctatctactagcctactt 22182874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 67
Target Start/End: Complemental strand, 26669683 - 26669638
Alignment:
Q  22 cacttattcaccttgaaaaaagtgaattttagctactagactactt 67  Q
    |||||||||||||||||||| ||||||| |||| |||| |||||||    
T  26669683 cacttattcaccttgaaaaaggtgaattctagccactaaactactt 26669638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 23 - 67
Target Start/End: Original strand, 10828375 - 10828419
Alignment:
Q  23 acttattcaccttgaaaaaagtgaattttagctactagactactt 67  Q
    ||||||||||||||||||||||||||| |||| | ||| ||||||    
T  10828375 acttattcaccttgaaaaaagtgaattctagccaatagcctactt 10828419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 22 - 67
Target Start/End: Complemental strand, 54854203 - 54854158
Alignment:
Q  22 cacttattcaccttgaaaaaagtgaattttagctactagactactt 67  Q
    |||||||||||||||||||||||||||| |||| ||||||||||||    
T  54854203 cacttattcaccttgaaaaaagtgaattctagccactagactactt 54854158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 137 - 195
Target Start/End: Original strand, 24750511 - 24750570
Alignment:
Q  137 atgtggctaattttcatt-tttgctggataaattacccacaattctttaagataacctaa 195  Q
    |||||||||||||||||| |||| ||  ||||||||||||||||||||||| ||||||||    
T  24750511 atgtggctaattttcattgtttgatgagtaaattacccacaattctttaaggtaacctaa 24750570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 22 - 67
Target Start/End: Original strand, 39293599 - 39293645
Alignment:
Q  22 cacttattcaccttgaaaaaag-tgaattttagctactagactactt 67  Q
    |||||||||||||||||||||| |||||| |||||||||||||||||    
T  39293599 cacttattcaccttgaaaaaaggtgaattctagctactagactactt 39293645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 23 - 67
Target Start/End: Complemental strand, 11863176 - 11863132
Alignment:
Q  23 acttattcaccttgaaaaaagtgaattttagctactagactactt 67  Q
    ||||||||||||||| ||||||||||| ||||||||||| |||||    
T  11863176 acttattcaccttgataaaagtgaattctagctactagattactt 11863132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 67
Target Start/End: Complemental strand, 12585585 - 12585538
Alignment:
Q  20 ctcacttattcaccttgaaaaaagtgaattttagctactagactactt 67  Q
    |||||||||||| ||||||||| ||||||| |||| ||||||||||||    
T  12585585 ctcacttattcatcttgaaaaaggtgaattctagccactagactactt 12585538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 23 - 53
Target Start/End: Original strand, 23234432 - 23234462
Alignment:
Q  23 acttattcaccttgaaaaaagtgaattttag 53  Q
    |||||||||||||||||||||||||||||||    
T  23234432 acttattcaccttgaaaaaagtgaattttag 23234462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 67
Target Start/End: Original strand, 33359888 - 33359933
Alignment:
Q  22 cacttattcaccttgaaaaaagtgaattttagctactagactactt 67  Q
    |||||||||||||||||||| ||||||| |||| ||||| ||||||    
T  33359888 cacttattcaccttgaaaaaggtgaattctagccactaggctactt 33359933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 67
Target Start/End: Complemental strand, 35230319 - 35230274
Alignment:
Q  22 cacttattcaccttgaaaaaagtgaattttagctactagactactt 67  Q
    |||||||| ||||||||| | |||||||||||| ||||||||||||    
T  35230319 cacttatttaccttgaaataggtgaattttagccactagactactt 35230274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 67
Target Start/End: Complemental strand, 49039469 - 49039424
Alignment:
Q  22 cacttattcaccttgaaaaaagtgaattttagctactagactactt 67  Q
    |||||||||||||||||||| ||||||| |||| ||||| ||||||    
T  49039469 cacttattcaccttgaaaaaggtgaattctagccactaggctactt 49039424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 15 - 67
Target Start/End: Complemental strand, 23226736 - 23226684
Alignment:
Q  15 gacaactcacttattcaccttgaaaaaagtgaattttagctactagactactt 67  Q
    |||| |||||||||||||||| ||||| ||||||| |||| |||| |||||||    
T  23226736 gacatctcacttattcaccttaaaaaatgtgaattatagccactatactactt 23226684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 15 - 67
Target Start/End: Original strand, 49743426 - 49743478
Alignment:
Q  15 gacaactcacttattcaccttgaaaaaagtgaattttagctactagactactt 67  Q
    |||| |||||||||| ||||||||||| |||||||||| | |||| |||||||    
T  49743426 gacacctcacttatttaccttgaaaaaggtgaattttaaccactaaactactt 49743478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 25 - 61
Target Start/End: Original strand, 54414018 - 54414054
Alignment:
Q  25 ttattcaccttgaaaaaagtgaattttagctactaga 61  Q
    |||||||| ||||||||||||||||||||| ||||||    
T  54414018 ttattcactttgaaaaaagtgaattttagcaactaga 54414054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 14 - 67
Target Start/End: Complemental strand, 20942141 - 20942088
Alignment:
Q  14 agacaactcacttattcaccttgaaaaaagtgaattttagctactagactactt 67  Q
    ||||| |||||||||||||||||||||||||||||| |||  ||||||||||||    
T  20942141 agacacctcacttattcaccttgaaaaaagtgaattctagtcactagactactt 20942088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 22 - 67
Target Start/End: Original strand, 34107345 - 34107390
Alignment:
Q  22 cacttattcaccttgaaaaaagtgaattttagctactagactactt 67  Q
    |||||||||||||||||||| ||||||| |||| ||||||||||||    
T  34107345 cacttattcaccttgaaaaatgtgaattctagccactagactactt 34107390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 65
Target Start/End: Original strand, 1244640 - 1244683
Alignment:
Q  22 cacttattcaccttgaaaaaagtgaattttagctactagactac 65  Q
    |||||||||||||||||||| ||||||| |||| ||||||||||    
T  1244640 cacttattcaccttgaaaaaggtgaattctagccactagactac 1244683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 49
Target Start/End: Original strand, 32944131 - 32944160
Alignment:
Q  20 ctcacttattcaccttgaaaaaagtgaatt 49  Q
    ||||||||||||||||||||||||||||||    
T  32944131 ctcacttattcaccttgaaaaaagtgaatt 32944160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 67
Target Start/End: Complemental strand, 35352428 - 35352383
Alignment:
Q  22 cacttattcaccttgaaaaaagtgaattttagctactagactactt 67  Q
    |||||||||||||||||||| ||||||| |||  ||||||||||||    
T  35352428 cacttattcaccttgaaaaatgtgaattctagtcactagactactt 35352383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 67
Target Start/End: Complemental strand, 39334905 - 39334860
Alignment:
Q  22 cacttattcaccttgaaaaaagtgaattttagctactagactactt 67  Q
    ||||||||||| |||||||| ||||||| |||| ||||||||||||    
T  39334905 cacttattcactttgaaaaaggtgaattctagccactagactactt 39334860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 24 - 67
Target Start/End: Original strand, 27684647 - 27684690
Alignment:
Q  24 cttattcaccttgaaaaaagtgaattttagctactagactactt 67  Q
    ||||||||||||||||||||||||||||||| |||| |||||||    
T  27684647 cttattcaccttgaaaaaagtgaattttagccactaaactactt 27684690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 65
Target Start/End: Complemental strand, 9768833 - 9768790
Alignment:
Q  22 cacttattcaccttgaaaaaagtgaattttagctactagactac 65  Q
    |||||||||||||||||||| ||||||| |||||||||| ||||    
T  9768833 cacttattcaccttgaaaaaggtgaattctagctactaggctac 9768790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 59
Target Start/End: Complemental strand, 9976408 - 9976371
Alignment:
Q  22 cacttattcaccttgaaaaaagtgaattttagctacta 59  Q
    |||||||||||||||||||||||||||| |||| ||||    
T  9976408 cacttattcaccttgaaaaaagtgaattctagccacta 9976371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 67
Target Start/End: Complemental strand, 23973506 - 23973461
Alignment:
Q  22 cacttattcaccttgaaaaaagtgaattttagctactagactactt 67  Q
    ||||||||||| |||||||| ||||||| |||| ||||||||||||    
T  23973506 cacttattcacgttgaaaaatgtgaattctagccactagactactt 23973461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 67
Target Start/End: Original strand, 33844688 - 33844733
Alignment:
Q  22 cacttattcaccttgaaaaaagtgaattttagctactagactactt 67  Q
    ||||||||||| |||||||| ||||||| |||| ||||||||||||    
T  33844688 cacttattcactttgaaaaaggtgaattatagccactagactactt 33844733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 67
Target Start/End: Complemental strand, 33949290 - 33949245
Alignment:
Q  22 cacttattcaccttgaaaaaagtgaattttagctactagactactt 67  Q
    ||||||||||| |||||||| ||||||| |||| ||||||||||||    
T  33949290 cacttattcactttgaaaaaggtgaattatagccactagactactt 33949245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 67
Target Start/End: Original strand, 38028608 - 38028653
Alignment:
Q  22 cacttattcaccttgaaaaaagtgaattttagctactagactactt 67  Q
    |||||||||||||||||||| ||||||| || ||||||| ||||||    
T  38028608 cacttattcaccttgaaaaatgtgaattctaactactaggctactt 38028653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 22 - 67
Target Start/End: Original strand, 20186935 - 20186980
Alignment:
Q  22 cacttattcaccttgaaaaaagtgaattttagctactagactactt 67  Q
    |||||||||||||||||||||||||||| || | ||||||||||||    
T  20186935 cacttattcaccttgaaaaaagtgaattataaccactagactactt 20186980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 64
Target Start/End: Complemental strand, 3663950 - 3663909
Alignment:
Q  23 acttattcaccttgaaaaaagtgaattttagctactagacta 64  Q
    |||||||||| ||||||||||||||||||||  |||||||||    
T  3663950 acttattcacattgaaaaaagtgaattttagtcactagacta 3663909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 67
Target Start/End: Complemental strand, 11246518 - 11246473
Alignment:
Q  22 cacttattcaccttgaaaaaagtgaattttagctactagactactt 67  Q
    |||||||||| ||||||||| ||||||| |||| ||||||||||||    
T  11246518 cacttattcagcttgaaaaaggtgaattctagccactagactactt 11246473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 67
Target Start/End: Original strand, 18535985 - 18536030
Alignment:
Q  22 cacttattcaccttgaaaaaagtgaattttagctactagactactt 67  Q
    |||||||||||||||||||||||||||| || | |||| |||||||    
T  18535985 cacttattcaccttgaaaaaagtgaattctaaccactaaactactt 18536030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 67
Target Start/End: Complemental strand, 37986891 - 37986846
Alignment:
Q  22 cacttattcaccttgaaaaaagtgaattttagctactagactactt 67  Q
    |||||||||||||||||||| ||||||| |||| ||||| ||||||    
T  37986891 cacttattcaccttgaaaaaggtgaattctagccactaggctactt 37986846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 15 - 67
Target Start/End: Complemental strand, 39208900 - 39208848
Alignment:
Q  15 gacaactcacttattcaccttgaaaaaagtgaattttagctactagactactt 67  Q
    |||| |||||||||||||||| ||||| ||||||| |||| ||||||||||||    
T  39208900 gacacctcacttattcacctttaaaaaggtgaattctagccactagactactt 39208848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 67
Target Start/End: Complemental strand, 220386 - 220341
Alignment:
Q  22 cacttattcaccttgaaaaaagtgaattttagctactagactactt 67  Q
    |||||||||||||||||||| ||||||| || | ||||||||||||    
T  220386 cacttattcaccttgaaaaaggtgaattctaaccactagactactt 220341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 67
Target Start/End: Complemental strand, 689541 - 689496
Alignment:
Q  22 cacttattcaccttgaaaaaagtgaattttagctactagactactt 67  Q
    |||||||||||||||||||| ||||||| || | ||||||||||||    
T  689541 cacttattcaccttgaaaaaggtgaattctaaccactagactactt 689496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 67
Target Start/End: Complemental strand, 734009 - 733964
Alignment:
Q  22 cacttattcaccttgaaaaaagtgaattttagctactagactactt 67  Q
    |||||||||||||||||||| ||||||| || | ||||||||||||    
T  734009 cacttattcaccttgaaaaaggtgaattctaaccactagactactt 733964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 67
Target Start/End: Complemental strand, 857905 - 857860
Alignment:
Q  22 cacttattcaccttgaaaaaagtgaattttagctactagactactt 67  Q
    |||||||||||||||||||| ||||||| || | ||||||||||||    
T  857905 cacttattcaccttgaaaaaggtgaattctaaccactagactactt 857860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 15 - 67
Target Start/End: Complemental strand, 12926509 - 12926457
Alignment:
Q  15 gacaactcacttattcaccttgaaaaaagtgaattttagctactagactactt 67  Q
    |||| |||||||||||| ||||||||| || |||| |||| ||||||||||||    
T  12926509 gacacctcacttattcatcttgaaaaaggtaaattctagccactagactactt 12926457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 23 - 59
Target Start/End: Complemental strand, 44254335 - 44254299
Alignment:
Q  23 acttattcaccttgaaaaaagtgaattttagctacta 59  Q
    ||||||||||||||||||| |||||||||||| ||||    
T  44254335 acttattcaccttgaaaaatgtgaattttagccacta 44254299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 67
Target Start/End: Original strand, 1110 - 1155
Alignment:
Q  22 cacttattcaccttgaaaaaagtgaattttagctactagactactt 67  Q
    |||||||||||||||||||| ||||||| |||| |||| |||||||    
T  1110 cacttattcaccttgaaaaaggtgaattctagccactaaactactt 1155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 15 - 59
Target Start/End: Original strand, 62777 - 62821
Alignment:
Q  15 gacaactcacttattcaccttgaaaaaagtgaattttagctacta 59  Q
    |||||| |||||||||| ||| ||||||||||||| |||||||||    
T  62777 gacaacccacttattcatcttaaaaaaagtgaattctagctacta 62821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 25 - 65
Target Start/End: Complemental strand, 32962920 - 32962880
Alignment:
Q  25 ttattcaccttgaaaaaagtgaattttagctactagactac 65  Q
    ||||||||||||||||| |||||||||||| |||| |||||    
T  32962920 ttattcaccttgaaaaatgtgaattttagccactaaactac 32962880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University