View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11048_low_1 (Length: 676)
Name: NF11048_low_1
Description: NF11048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11048_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 432; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 96 - 545
Target Start/End: Complemental strand, 38097693 - 38097247
Alignment:
| Q |
96 |
catatctcaacaattctcaaaatcgttcccataactatgaagatgctaaggagtccaatgcaactcctgctctttctcacccgaagttccaacaattgag |
195 |
Q |
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| T |
38097693 |
catatctcaacaattctcaaaatcgttcccataactatgaagatgctaaggagtccaatgcaactcctgctctttctcacccgaagttccaacaattgag |
38097594 |
T |
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| Q |
196 |
tttgttggggctcttgtaaattgtattttttaaaccaaattttacattaaacttattttcattaaaataaaacccacacctaaattatttttcttcatac |
295 |
Q |
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| T |
38097593 |
tttgttggggctcttgtaaattgtattttttaaaccaaattttacattaaacttattttcattaaaataaaacccacacctaaattatttttcttcatac |
38097494 |
T |
|
| Q |
296 |
tccattgatgaatcaacttataaaagaaatttgataggcttttattttattcaaatcaagttaacttgtattattatttcaaacgaattcatggcacaat |
395 |
Q |
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| T |
38097493 |
tccattgatgaatcaacttataaaagaaatttgataggcttttattttattcaaatcaagttaacttgtat---tatttcaaacgaattcatggcacaat |
38097397 |
T |
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| Q |
396 |
catatatagaagaatgaaaattacccgaggagcataagagaaagaagtttgtgccaaagcaggagtactatcattagtttgtcgcctagtgaatacaacc |
495 |
Q |
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| T |
38097396 |
catatatagaagaatgaaaattatccgaggagcataagagaaagaagtttgtgccaaagcaggagtactatcattagtttgtcgcctagtgaatacaacc |
38097297 |
T |
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| Q |
496 |
tctaagttgttgcaattagataaatgactctaagtagagtcatcaataat |
545 |
Q |
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| T |
38097296 |
tctaagttgttgcaattagataaatgactctaagtagagtcatcaataat |
38097247 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 592 - 676
Target Start/End: Complemental strand, 38097152 - 38097063
Alignment:
| Q |
592 |
aggcttgcattaaggtcacaaatgcactttactaaataag-----atgaaatcgagatttgaagagaaattaatattacatgcatcaacc |
676 |
Q |
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| T |
38097152 |
aggcttgcattaaggtcagaaatgcactttactaaataagatgagatgaaatcgggatttgaaaagaaattaatattacatgcatcaacc |
38097063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 428 - 507
Target Start/End: Original strand, 6783773 - 6783852
Alignment:
| Q |
428 |
cataagagaaagaagtttgtgccaaagcaggagtactatcattagtttgtcgcctagtgaatacaacctctaagttgttg |
507 |
Q |
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| T |
6783773 |
cataagagatagaagtttgtgccaaaacatgagctccatcattagtttttcgcctggtgaaaacaacttgaaagttgttg |
6783852 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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