View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11048_low_10 (Length: 476)
Name: NF11048_low_10
Description: NF11048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11048_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 439; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 19 - 461
Target Start/End: Complemental strand, 35448848 - 35448406
Alignment:
| Q |
19 |
cacagacttagagtatgcagaaattgcaagccactaagaacctctggcaactgaatcttacatttaatcaattttagtgtttttaacttgtgtagtgcgt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35448848 |
cacagacttagagtatgcagaaattgcaagccactaagaacctctggcaactgaatcttacatttaatcaattttagtgtttttaacttgtgtagtgcgt |
35448749 |
T |
|
| Q |
119 |
taaaaacactagattctattgtgaaactaggtaggaaaaaatgcaactcaagatcttctagatccttttgggtgcatatttgcagccatttgttaagcaa |
218 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35448748 |
taaaaacactagattctattgtgaaactaggtaggaaaaaatgcaactcaagatcttctagatccttttgggtgcatatttgcagccatttgttaagcaa |
35448649 |
T |
|
| Q |
219 |
agctttgatcccaacaggatcgatatgtaacataaacgttttaatttcattaccttcatgcgaattaaataagtgatcaacaatcgcaaccaaattttgt |
318 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35448648 |
agctttgatcccaacaggatcgatatgtaacataaacgttttaatttcattaccttcatgcgaattaaataagtgatcaacaatcgcaaccaaattttgt |
35448549 |
T |
|
| Q |
319 |
tgaccgtattgtaaatggaagtctctaccaaacaagaatcgacgattatgacgccatgatcctttgtacctcggggatccagttgatgcagctacaattg |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35448548 |
tgaccgtattgtaaatggaagtctctaccaaacaagaatcgacgattatggcgccatgatcctttgtacctcggggatccagttgatgcagctacaattg |
35448449 |
T |
|
| Q |
419 |
cattttttattggtaacaaagtgaaaattgtataaatgatatc |
461 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35448448 |
cattttttattggtaacaaagtgaaaattgtataaatgatatc |
35448406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 133; Significance: 6e-69; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 34 - 446
Target Start/End: Original strand, 16903405 - 16903817
Alignment:
| Q |
34 |
tgcagaaattgcaagccactaagaacctctggcaactgaatcttacatttaatcaattttagtgtttttaacttgtgtagtgcgttaaaaacactagatt |
133 |
Q |
| |
|
|||| ||||||||| ||||| |||| ||||| |||| ||| ||||| | |||||||| ||||||||||||||| |||||| |||||||| |||||| |
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|
| T |
16903405 |
tgcaaaaattgcaaaccacttggaacttctggtaactcgatcacacattgagccaattttaatgtttttaacttgtgcagtgcgctaaaaacagtagatt |
16903504 |
T |
|
| Q |
134 |
ctattgtgaaactaggtaggaaaaaatgcaactcaagatcttctagatccttttgggtgcatatttgcagccatttgttaagcaaagctttgatcccaac |
233 |
Q |
| |
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| |||||||||| |||| || ||||| || ||||||||| |||||||| || | ||||||||||||| |||| | ||||||||| ||| ||||||||| |
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| T |
16903505 |
caattgtgaaaccaggttggtaaaaagacagctcaagatcctctagatctttcttagtgcatatttgcaaccatctcttaagcaaaacttcgatcccaac |
16903604 |
T |
|
| Q |
234 |
aggatcgatatgtaacataaacgttttaatttcattaccttcatgcgaattaaataagtgatcaacaatcgcaaccaaattttgttgaccgtattgtaaa |
333 |
Q |
| |
|
|||||||||||||||| ||||||||| ||||| | |||||||||||||| ||||| |||||||| || ||| ||||||||| ||| ||| | ||| |
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| T |
16903605 |
aggatcgatatgtaactgaaacgtttttatttcgtcgccttcatgcgaattgaataattgatcaactattgcagccaaattttcttggttatatcggaaa |
16903704 |
T |
|
| Q |
334 |
tggaagtctctaccaaacaagaatcgacgattatgacgccatgatcctttgtacctcggggatccagttgatgcagctacaattgcattttttattggta |
433 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| |||||||| ||||||| | || || | |||| ||||| || |||||||| ||| ||||||| |
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| T |
16903705 |
cataagtctctatcaaacaagaatcgacgattatgacaccatgatcttttgtacttaggagacacggttgttgcagttaaaattgcatgtttgattggta |
16903804 |
T |
|
| Q |
434 |
acaaagtgaaaat |
446 |
Q |
| |
|
| ||||||||||| |
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|
| T |
16903805 |
agaaagtgaaaat |
16903817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 19 - 446
Target Start/End: Complemental strand, 28839453 - 28839026
Alignment:
| Q |
19 |
cacagacttagagtatgcagaaattgcaagccactaagaacctctggcaactgaatcttacatttaatcaattttagtgtttttaacttgtgtagtgcgt |
118 |
Q |
| |
|
||||||||||| || |||||||||||||| ||||| ||||||| |||||||| ||| |||| ||||||||||||||||| ||||| ||||||| |
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|
| T |
28839453 |
cacagacttagtgtttgcagaaattgcaaaccactcggaacctcgattaactgaattgcacaattaactaattttagtgtttttaatttgtgaagtgcgt |
28839354 |
T |
|
| Q |
119 |
taaaaacactagattctattgtgaaactaggtaggaaaaaatgcaactcaagatcttctagatccttttgggtgcatatttgcagccatttgttaagcaa |
218 |
Q |
| |
|
||||||||||| |||| | ||||||| |||| || ||| ||||||||||||||||||||||| |||| || ||||| | | |||| | |||||||| |
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|
| T |
28839353 |
taaaaacactaaattcaaccgtgaaaccaggttggtaaagatgcaactcaagatcttctagatttttttcagtacatatatataaccatcttttaagcaa |
28839254 |
T |
|
| Q |
219 |
agctttgatcccaacaggatcgatatgtaacataaacgttttaatttcattaccttcatgcgaattaaataagtgatcaacaatcgcaaccaaattttgt |
318 |
Q |
| |
|
||||| ||| |||| | |||||| |||||| |||| ||||| ||||| | ||||| || ||||| ||||| |||||||| || || |||||| | || |
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|
| T |
28839253 |
agcttcgattccaatggaatcgatgtgtaacttaaatgttttgatttcgtcacctttgtgagaattgaataaatgatcaaccattgctgccaaatctggt |
28839154 |
T |
|
| Q |
319 |
tgaccgtattgtaaatggaagtctctaccaaacaagaatcgacgattatgacgccatgatcctttgtacctcggggatccagttgatgcagctacaattg |
418 |
Q |
| |
|
|||| |||| | |||||||||| ||| ||||||||||||||||||||| ||||||||| | ||||||||| || || | ||||||||| |||||||| |
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| T |
28839153 |
tgactgtatcgcgaatggaagtcactatcaaacaagaatcgacgattataacgccatgaacttttgtacctaggagacacggttgatgcaattacaattg |
28839054 |
T |
|
| Q |
419 |
cattttttattggtaacaaagtgaaaat |
446 |
Q |
| |
|
||||||||||||||| ||||||||||| |
|
|
| T |
28839053 |
cattttttattggtaggaaagtgaaaat |
28839026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 34 - 446
Target Start/End: Complemental strand, 28953403 - 28952991
Alignment:
| Q |
34 |
tgcagaaattgcaagccactaagaacctctggcaactgaatcttacatttaatcaattttagtgtttttaacttgtgtagtgcgttaaaaacactagatt |
133 |
Q |
| |
|
|||||||||||||||||| | |||| | ||| |||| ||| |||||||| |||||| ||||||||||||||| |||||| ||||||||| || | | |
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|
| T |
28953403 |
tgcagaaattgcaagccattgggaacgtttggacactggatcgcacatttaaccaatttcagtgtttttaacttggatagtgcattaaaaacattaaaat |
28953304 |
T |
|
| Q |
134 |
ctattgtgaaactaggtaggaaaaaatgcaactcaagatcttctagatccttttgggtgcatatttgcagccatttgttaagcaaagctttgatcccaac |
233 |
Q |
| |
|
| | |||||||| |||| || ||||||||||||||||||||||||||||||| | ||||||||||| | |||||| | | |||||||| |||||||| |
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|
| T |
28953303 |
caactgtgaaaccaggttggtaaaaatgcaactcaagatcttctagatccttcttagtgcatatttgtaaccatttccttaccaaagcttcaatcccaac |
28953204 |
T |
|
| Q |
234 |
aggatcgatatgtaacataaacgttttaatttcattaccttcatgcgaattaaataagtgatcaacaatcgcaaccaaattttgttgaccgtattgtaaa |
333 |
Q |
| |
|
|||||||||||||||||||| | |||||||| | ||||| |||||||| ||||| |||||| | ||| | || | ||||| |||| | ||| |
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|
| T |
28953203 |
gggatcgatatgtaacataaatgatttaattttttcacctttgtgcgaattgaataaacgatcaatggttgcagcttgatatcgttgagtgtatcgaaaa |
28953104 |
T |
|
| Q |
334 |
tggaagtctctaccaaacaagaatcgacgattatgacgccatgatcctttgtacctcggggatccagttgatgcagctacaattgcattttttattggta |
433 |
Q |
| |
|
|||||||| |||| ||||||||| |||||||||||||| |||| | ||||||| | || || ||||||||||| || ||||||| ||| ||||||| |
|
|
| T |
28953103 |
tggaagtccttaccgaacaagaattgacgattatgacgcaatgaacttttgtacataggagacacagttgatgcaatcactattgcatctttgattggta |
28953004 |
T |
|
| Q |
434 |
acaaagtgaaaat |
446 |
Q |
| |
|
| || |||||||| |
|
|
| T |
28953003 |
aaaaggtgaaaat |
28952991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 231
Target Start/End: Complemental strand, 32405939 - 32405741
Alignment:
| Q |
19 |
cacagacttagagtatgcagaaattgcaagccactaagaacctctggcaactgaatcttacatttaatcaattttagtgtttttaacttgtgtagtgcgt |
118 |
Q |
| |
|
|||| |||||| || |||||||| |||| ||||| ||||||| || || || ||| |||||| || ||||||||||||||||||||| || | || || |
|
|
| T |
32405939 |
cacaaacttagtgtttgcagaaaccgcaaaccactcggaacctc-ggtaattggatcatacattgaaccaattttagtgtttttaacttatgcaatgtgt |
32405841 |
T |
|
| Q |
119 |
taaaaacactagattctattgtgaaactaggtaggaaaaaatgcaactcaagatcttctagatccttttgggtgcatatttgcagccatttgttaagcaa |
218 |
Q |
| |
|
|||||||| || |||| | | |||||| |||| |||||||||||||||||| |||||| ||||||||||| | |||| | |||| ||| |
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|
| T |
32405840 |
taaaaacattaaattcaactacgaaactcggta----aaaatgcaactcaagatc---------cttttgagtgcatatttgtaaccatctcttaatcaa |
32405754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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