View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11048_low_11 (Length: 458)
Name: NF11048_low_11
Description: NF11048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11048_low_11 |
 | |
|
| [»] scaffold0781 (2 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 414; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 17 - 450
Target Start/End: Complemental strand, 2216006 - 2215573
Alignment:
| Q |
17 |
gatacaaatccataattataaccaaaatgaaatgttattatatctgaaaataagtatcaattcttgtcaaggagcttagaaaaacgattcaaaccctctt |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2216006 |
gatacaaatccataattataaccaaaatgaaatgttattatatctgaaaatgagtatcaattcttgtcaaggagcttagaaaaacgattcaaaccctctt |
2215907 |
T |
|
| Q |
117 |
gttatatgaatgtgactctggtgctttaaataaaaatttctcaatgaactccttgaattggttacatgccgatgcacttgggagatagcatcaatctact |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
2215906 |
gttatatgaatgtgactctggtgctttaaataaaaatttctcaatgaactccttgaattggttacatgccgatgcactcgggagatagcatcaatctact |
2215807 |
T |
|
| Q |
217 |
cgggagattcaattgttcctatcaagaggtagaatccgatgggcgtggacaacagatatgcacacatgtgtgcatgcgtgcgtacatccatgtgcgtgtt |
316 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2215806 |
cgggagattcaattcttcctatcaagaggtagaatccgatgggcgtggacaacagatatgcacacatgtgtgcatgcgtgcgtacatccatgtgcgtgtt |
2215707 |
T |
|
| Q |
317 |
gtgtccttctattcttttacgaatattttcatagtgtattataattttgaaaattgaatattttcaacaacaatgggcgcatatcacacaacgatgccgt |
416 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
2215706 |
gtgtccttctattcttttacgaatattttcatagtgtattataattttgaaaattgaatattttcaataacaatgggcgcatatcacacaacgatgccgt |
2215607 |
T |
|
| Q |
417 |
ttcattacctcctattacgacctcatttcttctc |
450 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| |
|
|
| T |
2215606 |
ttcattacctcctgttacgacctcatttcttctc |
2215573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 275 - 365
Target Start/End: Complemental strand, 2217070 - 2216980
Alignment:
| Q |
275 |
tgcacacatgtgtgcatgcgtgcgtacatccatgtgcgtgttgtgtccttctattcttttacgaatattttcatagtgtattataattttg |
365 |
Q |
| |
|
|||||||||| |||| || |||||| | || ||||| ||||||||||||| ||||||||||| |||| ||| ||||| ||||| ||||||| |
|
|
| T |
2217070 |
tgcacacatgcgtgcttgtgtgcgtgcgtcaatgtgagtgttgtgtccttgtattcttttacaaataattttatagtatattacaattttg |
2216980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0781 (Bit Score: 392; Significance: 0; HSPs: 2)
Name: scaffold0781
Description:
Target: scaffold0781; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 17 - 444
Target Start/End: Complemental strand, 4463 - 4036
Alignment:
| Q |
17 |
gatacaaatccataattataaccaaaatgaaatgttattatatctgaaaataagtatcaattcttgtcaaggagcttagaaaaacgattcaaaccctctt |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4463 |
gatacaaatccataattataaccaaaatgaaatgttattatatctgaaaatgagtatcaattcttgtcaaggagcttagaaaaacgattcaaaccctctt |
4364 |
T |
|
| Q |
117 |
gttatatgaatgtgactctggtgctttaaataaaaatttctcaatgaactccttgaattggttacatgccgatgcacttgggagatagcatcaatctact |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
4363 |
gttatatgaatgtgactctggtgctttaaataaaaatttctcaatgaactccttgaattggttacatgccgatgcactcgggagatagcatcaatctact |
4264 |
T |
|
| Q |
217 |
cgggagattcaattgttcctatcaagaggtagaatccgatgggcgtggacaacagatatgcacacatgtgtgcatgcgtgcgtacatccatgtgcgtgtt |
316 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |
|
|
| T |
4263 |
cgggagattcaattcttcctatcaagaggtagaatccgatgggcgtggacaacagatatgcaaaaatgtgtgcatgcgtgcgtacatccatgtgcgtgtt |
4164 |
T |
|
| Q |
317 |
gtgtccttctattcttttacgaatattttcatagtgtattataattttgaaaattgaatattttcaacaacaatgggcgcatatcacacaacgatgccgt |
416 |
Q |
| |
|
|||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
4163 |
gtgtccttttatttttttacgaatattttcatagtgtattataattttgaaaattgaatattttcaataacaatgggcgcatatcacacaacgatgccgt |
4064 |
T |
|
| Q |
417 |
ttcattacctcctattacgacctcattt |
444 |
Q |
| |
|
||||||||||||| |||||||||||||| |
|
|
| T |
4063 |
ttcattacctcctgttacgacctcattt |
4036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0781; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 275 - 365
Target Start/End: Complemental strand, 5526 - 5437
Alignment:
| Q |
275 |
tgcacacatgtgtgcatgcgtgcgtacatccatgtgcgtgttgtgtccttctattcttttacgaatattttcatagtgtattataattttg |
365 |
Q |
| |
|
|||||||||| |||| || |||||| | | |||||| ||||||||||||| ||||||||||| |||| ||| ||||| ||||| ||||||| |
|
|
| T |
5526 |
tgcacacatgcgtgcttgtgtgcgtgcgttcatgtgagtgttgtgtccttgtattcttttac-aataattttatagtatattacaattttg |
5437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University