View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11048_low_15 (Length: 397)
Name: NF11048_low_15
Description: NF11048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11048_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 248; Significance: 1e-137; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 74 - 357
Target Start/End: Original strand, 2656362 - 2656644
Alignment:
| Q |
74 |
cactaggtacatgaacgaaagtaccatttcaaactggtctcaggttcacatatagttgcaagaacaaatccttgacatacctgcataataatgatcatca |
173 |
Q |
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| T |
2656362 |
cactgggtacatgaacgaaagtaccattccaaactggtctcaggttcacatatagttgcaagaacaaatccttgacatacctgcataataatgatcatca |
2656461 |
T |
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| Q |
174 |
attagtaatgattatttggtccacttgttcaactgtctattttaaattgaaacttattaacatataagagacataaataaaccacctcagatgattcaat |
273 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2656462 |
attagtaatgatcatttggtccacttgttcaactgtctattttaaattgaaacttattaacatataagagacataaataaaccacctcagatgattcaat |
2656561 |
T |
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| Q |
274 |
caaattttcaatcgtcatcctttttgtctttagcaaatccttagacaacgacacagtcttatgcgtggacatctggctcacacc |
357 |
Q |
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| T |
2656562 |
caaattttcaatcgtcatccttttcgtctttaggaaatcctcagacaatgacacagtcttatg-gtggacatctggctcacacc |
2656644 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 341 - 379
Target Start/End: Complemental strand, 50718767 - 50718729
Alignment:
| Q |
341 |
gacatctggctcacaccttggctcatatctatatcagca |
379 |
Q |
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| T |
50718767 |
gacatctggctcacaccctgactcatatctatatcagca |
50718729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 341 - 379
Target Start/End: Original strand, 50794081 - 50794119
Alignment:
| Q |
341 |
gacatctggctcacaccttggctcatatctatatcagca |
379 |
Q |
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| T |
50794081 |
gacatctggctcacaccctgactcatatctatatcagca |
50794119 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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