View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11048_low_19 (Length: 367)

Name: NF11048_low_19
Description: NF11048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11048_low_19
NF11048_low_19
[»] chr1 (8 HSPs)
chr1 (29-219)||(8376502-8376690)
chr1 (229-352)||(8376338-8376459)
chr1 (33-89)||(44895116-44895172)
chr1 (244-293)||(12188699-12188748)
chr1 (240-282)||(3895623-3895665)
chr1 (244-293)||(2193268-2193317)
chr1 (245-293)||(29020152-29020200)
chr1 (244-284)||(42724007-42724047)
[»] chr4 (7 HSPs)
chr4 (240-292)||(48582241-48582293)
chr4 (244-293)||(11086337-11086386)
chr4 (244-293)||(37626782-37626831)
chr4 (244-285)||(37858277-37858318)
chr4 (245-293)||(21865253-21865301)
chr4 (245-293)||(21921114-21921162)
chr4 (244-292)||(41260003-41260051)
[»] chr2 (5 HSPs)
chr2 (243-293)||(168728-168778)
chr2 (233-293)||(31598026-31598086)
chr2 (245-285)||(8033273-8033313)
chr2 (244-293)||(31915045-31915094)
chr2 (244-285)||(38373335-38373376)
[»] chr8 (5 HSPs)
chr8 (245-293)||(27982375-27982423)
chr8 (245-293)||(28039677-28039725)
chr8 (256-293)||(44167177-44167214)
chr8 (91-134)||(8001275-8001316)
chr8 (233-285)||(22488874-22488926)
[»] chr7 (2 HSPs)
chr7 (233-293)||(23070208-23070268)
chr7 (244-293)||(11907285-11907334)
[»] chr5 (2 HSPs)
chr5 (32-89)||(14536340-14536397)
chr5 (244-293)||(30251953-30252002)
[»] chr3 (1 HSPs)
chr3 (244-293)||(42005413-42005462)


Alignment Details
Target: chr1 (Bit Score: 172; Significance: 2e-92; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 29 - 219
Target Start/End: Complemental strand, 8376690 - 8376502
Alignment:
Q  29 ttgggacaaagaaggtcattttgataaaataaaaaattgtttaaccagggtaaacaaaagtgttaacggaaaaatatatatattcggatcaaaatatata 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||  |||||||||||||||||    
T  8376690 ttgggacaaagaaggtcattttgataaaataaaaaattgtttaaccagggtgaacaaaagtgttaacggaaaaatatatat--tcggatcaaaatatata 8376593  T
Q  129 attttggatttttgggaggattgtgtatgtcataaaacatgagaggagatggttgtaatttgtgatatcacattatttttgaaggggaaaa 219  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8376592 attttgcatttttgggaggattgtgtatgtcataaaacatgagaggagatggttgtaatttgtgatatcacattatttttgaaggggaaaa 8376502  T

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Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 229 - 352
Target Start/End: Complemental strand, 8376459 - 8376338
Alignment:
Q  229 gctataaggataattgttaaggatttcattaatagaaactttatcttagaaatacaaatctttacnnnnnnnnnctaacaataattacaccacttctttt 328  Q
    |||||||||| |||||||||| |||||||||||||||| ||||| || |||||| || | |||||         |||||||||||||||||| || ||||    
T  8376459 gctataaggacaattgttaagaatttcattaatagaaattttattttggaaatataagtttttacttttttt--ctaacaataattacaccatttttttt 8376362  T
Q  329 ttatgcaaacctacttattttaat 352  Q
    |||||||||| |||||||||||||    
T  8376361 ttatgcaaacttacttattttaat 8376338  T

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Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 33 - 89
Target Start/End: Complemental strand, 44895172 - 44895116
Alignment:
Q  33 gacaaagaaggtcattttgataaaataaaaaattgtttaaccagggtaaacaaaagt 89  Q
    ||||||||| |||| |||||||||||||||||||||||||| ||| |||||||||||    
T  44895172 gacaaagaatgtcaatttgataaaataaaaaattgtttaacaaggctaaacaaaagt 44895116  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 244 - 293
Target Start/End: Complemental strand, 12188748 - 12188699
Alignment:
Q  244 gttaaggatttcattaatagaaactttatcttagaaatacaaatctttac 293  Q
    |||||||||| |||||||||||||||| |||| ||||||||||| |||||    
T  12188748 gttaaggattccattaatagaaactttgtcttggaaatacaaatttttac 12188699  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 282
Target Start/End: Complemental strand, 3895665 - 3895623
Alignment:
Q  240 aattgttaaggatttcattaatagaaactttatcttagaaata 282  Q
    |||||||||| |||||||||||||||| ||||||||| |||||    
T  3895665 aattgttaagaatttcattaatagaaattttatcttaaaaata 3895623  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 293
Target Start/End: Original strand, 2193268 - 2193317
Alignment:
Q  244 gttaaggatttcattaatagaaactttatcttagaaatacaaatctttac 293  Q
    ||||||||||  ||||||||||||||||||||  ||||| ||||||||||    
T  2193268 gttaaggattctattaatagaaactttatcttgaaaatataaatctttac 2193317  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 245 - 293
Target Start/End: Complemental strand, 29020200 - 29020152
Alignment:
Q  245 ttaaggatttcattaatagaaactttatcttagaaatacaaatctttac 293  Q
    ||||||| ||||||| |||||| ||| |||||||||||||||| |||||    
T  29020200 ttaaggaattcattagtagaaattttgtcttagaaatacaaatttttac 29020152  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 244 - 284
Target Start/End: Complemental strand, 42724047 - 42724007
Alignment:
Q  244 gttaaggatttcattaatagaaactttatcttagaaataca 284  Q
    |||||||||| |||||||||||||||| |||| ||||||||    
T  42724047 gttaaggattccattaatagaaactttgtctttgaaataca 42724007  T

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Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 240 - 292
Target Start/End: Complemental strand, 48582293 - 48582241
Alignment:
Q  240 aattgttaaggatttcattaatagaaactttatcttagaaatacaaatcttta 292  Q
    ||||||||||||||||||||||||||||||||||||  |||||||||||||||    
T  48582293 aattgttaaggatttcattaatagaaactttatcttgaaaatacaaatcttta 48582241  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 244 - 293
Target Start/End: Complemental strand, 11086386 - 11086337
Alignment:
Q  244 gttaaggatttcattaatagaaactttatcttagaaatacaaatctttac 293  Q
    |||||||||||||||||||| ||||||||||| |||||||||||||||||    
T  11086386 gttaaggatttcattaataggaactttatcttggaaatacaaatctttac 11086337  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 244 - 293
Target Start/End: Complemental strand, 37626831 - 37626782
Alignment:
Q  244 gttaaggatttcattaatagaaactttatcttagaaatacaaatctttac 293  Q
    ||||||||||||||||||| ||||||| |||| ||||||||| |||||||    
T  37626831 gttaaggatttcattaatataaactttgtcttggaaatacaagtctttac 37626782  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 285
Target Start/End: Complemental strand, 37858318 - 37858277
Alignment:
Q  244 gttaaggatttcattaatagaaactttatcttagaaatacaa 285  Q
    ||||||||||| ||||||||||||||||||||  ||||||||    
T  37858318 gttaaggatttgattaatagaaactttatcttgaaaatacaa 37858277  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 245 - 293
Target Start/End: Complemental strand, 21865301 - 21865253
Alignment:
Q  245 ttaaggatttcattaatagaaactttatcttagaaatacaaatctttac 293  Q
    ||||||||| ||||||||| || |||||||| ||||||||||| |||||    
T  21865301 ttaaggattccattaatagtaattttatcttggaaatacaaatttttac 21865253  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 245 - 293
Target Start/End: Complemental strand, 21921162 - 21921114
Alignment:
Q  245 ttaaggatttcattaatagaaactttatcttagaaatacaaatctttac 293  Q
    ||||||||| ||||||||| || |||||||| ||||||||||| |||||    
T  21921162 ttaaggattccattaatagtaattttatcttggaaatacaaatttttac 21921114  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 244 - 292
Target Start/End: Original strand, 41260003 - 41260051
Alignment:
Q  244 gttaaggatttcattaatagaaactttatcttagaaatacaaatcttta 292  Q
    |||||||||| |||||||||||||||| ||||  |||||||| ||||||    
T  41260003 gttaaggattccattaatagaaactttgtcttgaaaatacaagtcttta 41260051  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 243 - 293
Target Start/End: Complemental strand, 168778 - 168728
Alignment:
Q  243 tgttaaggatttcattaatagaaactttatcttagaaatacaaatctttac 293  Q
    ||||||||||| |||||||||||| ||||||||||||||||||||||||||    
T  168778 tgttaaggattccattaatagaaattttatcttagaaatacaaatctttac 168728  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 233 - 293
Target Start/End: Original strand, 31598026 - 31598086
Alignment:
Q  233 taaggataattgttaaggatttcattaatagaaactttatcttagaaatacaaatctttac 293  Q
    |||||| ||| |||||||||| |||||||||||||||| |||| ||||| |||||||||||    
T  31598026 taaggacaatagttaaggattccattaatagaaactttgtcttggaaattcaaatctttac 31598086  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 285
Target Start/End: Original strand, 8033273 - 8033313
Alignment:
Q  245 ttaaggatttcattaatagaaactttatcttagaaatacaa 285  Q
    |||||||||||||||||||||||||||||||  ||||||||    
T  8033273 ttaaggatttcattaatagaaactttatcttgaaaatacaa 8033313  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 293
Target Start/End: Original strand, 31915045 - 31915094
Alignment:
Q  244 gttaaggatttcattaatagaaactttatcttagaaatacaaatctttac 293  Q
    |||||||||| |||||||||||||||| ||||  |||||||| |||||||    
T  31915045 gttaaggattccattaatagaaactttgtcttgaaaatacaagtctttac 31915094  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 285
Target Start/End: Original strand, 38373335 - 38373376
Alignment:
Q  244 gttaaggatttcattaatagaaactttatcttagaaatacaa 285  Q
    ||||| |||| ||||||||||||||||||||| |||||||||    
T  38373335 gttaatgattccattaatagaaactttatcttggaaatacaa 38373376  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 293
Target Start/End: Complemental strand, 27982423 - 27982375
Alignment:
Q  245 ttaaggatttcattaatagaaactttatcttagaaatacaaatctttac 293  Q
    ||||||||| |||||||||||||||| |||| ||||||||| |||||||    
T  27982423 ttaaggattccattaatagaaactttgtcttggaaatacaagtctttac 27982375  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 293
Target Start/End: Complemental strand, 28039725 - 28039677
Alignment:
Q  245 ttaaggatttcattaatagaaactttatcttagaaatacaaatctttac 293  Q
    ||||||||| |||||||||||||||| |||| ||||||||| |||||||    
T  28039725 ttaaggattccattaatagaaactttgtcttggaaatacaagtctttac 28039677  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 293
Target Start/End: Original strand, 44167177 - 44167214
Alignment:
Q  256 attaatagaaactttatcttagaaatacaaatctttac 293  Q
    ||||||||||||||| |||| |||||||||||||||||    
T  44167177 attaatagaaactttgtcttggaaatacaaatctttac 44167214  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 91 - 134
Target Start/End: Complemental strand, 8001316 - 8001275
Alignment:
Q  91 ttaacggaaaaatatatatattcggatcaaaatatataattttg 134  Q
    |||||||||||||||| ||  |||||||||||||||||||||||    
T  8001316 ttaacggaaaaatataaat--tcggatcaaaatatataattttg 8001275  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 233 - 285
Target Start/End: Complemental strand, 22488926 - 22488874
Alignment:
Q  233 taaggataattgttaaggatttcattaatagaaactttatcttagaaatacaa 285  Q
    ||||| |||| |||||||||| |||||||||||||||| | || |||||||||    
T  22488926 taagggtaatggttaaggattccattaatagaaactttgttttggaaatacaa 22488874  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 293
Target Start/End: Original strand, 23070208 - 23070268
Alignment:
Q  233 taaggataattgttaaggatttcattaatagaaactttatcttagaaatacaaatctttac 293  Q
    |||||| ||| |||||| ||| |||||||||||||||| |||| ||||||||| |||||||    
T  23070208 taaggacaatggttaagaattccattaatagaaactttgtcttggaaatacaagtctttac 23070268  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 293
Target Start/End: Original strand, 11907285 - 11907334
Alignment:
Q  244 gttaaggatttcattaatagaaactttatcttagaaatacaaatctttac 293  Q
    |||||||||| |||||||||||| ||| | |||||||||||| |||||||    
T  11907285 gttaaggattccattaatagaaaatttgttttagaaatacaagtctttac 11907334  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 89
Target Start/End: Complemental strand, 14536397 - 14536340
Alignment:
Q  32 ggacaaagaaggtcattttgataaaataaaaaattgtttaaccagggtaaacaaaagt 89  Q
    ||||||| || |||||||||||||||||||||||| |||| | |||  ||||||||||    
T  14536397 ggacaaaaaatgtcattttgataaaataaaaaattatttagcaaggtcaaacaaaagt 14536340  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 293
Target Start/End: Original strand, 30251953 - 30252002
Alignment:
Q  244 gttaaggatttcattaatagaaactttatcttagaaatacaaatctttac 293  Q
    |||||||||| |||||||||||| ||| |||| ||||||||| |||||||    
T  30251953 gttaaggattccattaatagaaattttgtcttggaaatacaagtctttac 30252002  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 293
Target Start/End: Complemental strand, 42005462 - 42005413
Alignment:
Q  244 gttaaggatttcattaatagaaactttatcttagaaatacaaatctttac 293  Q
    |||||||||| |||||||||||| ||||| ||  ||||||||||||||||    
T  42005462 gttaaggattccattaatagaaattttatattgaaaatacaaatctttac 42005413  T

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