View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11048_low_2 (Length: 653)
Name: NF11048_low_2
Description: NF11048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11048_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 531; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 531; E-Value: 0
Query Start/End: Original strand, 1 - 635
Target Start/End: Complemental strand, 42088290 - 42087656
Alignment:
| Q |
1 |
catgaacgtgacaactcgtgacaagtaaagagttccttctacaaatgaaatagatagggccattagatgtcctacaacaagtaaactaacaaagataatt |
100 |
Q |
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| T |
42088290 |
catgaacgtgacaactcgtgacaagtaaagagttccttctacaaatgaaatagataaggccattagatgtcctacaacaagtaaactaacaaagataatt |
42088191 |
T |
|
| Q |
101 |
tcttgagtgcttcttttccaactctatgagcttctcgtgtgttttatgcagtttaggttatataatccgaacaatacagacagcctataaaaaattctta |
200 |
Q |
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| T |
42088190 |
tcttgagtgcttcttttccaactctatgagtttctcgtgtgtcttatgcagttcaggttatataatctgaacgatacagacattccctaaaaacttctaa |
42088091 |
T |
|
| Q |
201 |
aaacgcgtttgaaatattttgaatgttaaaattagaataggacgcatgagaaactcgtagagtgagaaaagtaacggtctacgttttttctacctagcaa |
300 |
Q |
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| T |
42088090 |
aaatacgtttgaaatattttagattttaaaatcagaataggacgcacgaaaaactcatagagtgagaaaagtaacggtctactttctttctacctagcaa |
42087991 |
T |
|
| Q |
301 |
ataaaaagatagtaagcaccacacgttttctagtaccataagtcactatgatccttcctttacaagttccaataacgtgatacaaataaccttgacatac |
400 |
Q |
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| T |
42087990 |
ataaaaagatagtaagcaccacacgttttctagtaccataagtcactatgatccttcctttacaagttccaataacgtgatacaaataaccttgacatac |
42087891 |
T |
|
| Q |
401 |
attcttttttagctatatatattctacatcctattccccctcaccaaattttaatcttttttattattaaacaaatcttccttcaaattccgaaaattca |
500 |
Q |
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| T |
42087890 |
attcttttttagctatatatattctacatcctattccccctcaacaaattttaatcttttttattattaaacaaatcttccttcaaattccaaaaattca |
42087791 |
T |
|
| Q |
501 |
aaacttaggccttagccatatataatatgatggaggaagaagagaatattcatgaagggtttaaaggaaaaaatgttgaaagcatgagttgcttggagac |
600 |
Q |
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| T |
42087790 |
aaacttaggccttagccatatataatatgatggaggaagaagagaatattcatgaagggtttaaaggaaaaaatgttgaaagcatgagttgcttagagac |
42087691 |
T |
|
| Q |
601 |
acctcagaattcaaagaagaaaaacaagaagatag |
635 |
Q |
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| T |
42087690 |
acctcagaattcaaagaagaaaaacaagaagatag |
42087656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 108 - 172
Target Start/End: Original strand, 13019597 - 13019661
Alignment:
| Q |
108 |
tgcttcttttccaactctatgagcttctcgtgtgttttatgcagtttaggttatataatccgaac |
172 |
Q |
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| T |
13019597 |
tgcttcttttcccactctatgaacttctcatgcgtcctatgcagtttggattatagaatccgaac |
13019661 |
T |
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