View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11048_low_20 (Length: 360)
Name: NF11048_low_20
Description: NF11048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11048_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 316; Significance: 1e-178; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 18 - 341
Target Start/End: Complemental strand, 27571080 - 27570757
Alignment:
| Q |
18 |
acatcagccaactattatctgatatatctgcaatttgtaaatcatgagtaggacctgaattatagatcagaaacagtgttaggaggcaagaagagaacca |
117 |
Q |
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| T |
27571080 |
acatcagccaactattatctgatatatcttcaatttgtaaatcatgagtaggacctgaattatagatcagaagcagtgttaggaggcaagaagagaacca |
27570981 |
T |
|
| Q |
118 |
atattaaacgcaagatcacaaacgactatgaaccacgttttatatttttgcattttgttataactaatccaatggtagacatgctctcgacatctcacat |
217 |
Q |
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| T |
27570980 |
atattaaacgcaagatcacaaacgactatgaaccacgttttatatttttgcattttgttataactaatccaatggtagacatgctctcgacatctcacat |
27570881 |
T |
|
| Q |
218 |
gtaatttcttcgaattgacaatgcagctaatatacatctaccatttgaatatatatcagatttatgtgcaacttgtaaagcttgtgtaggacctaattgt |
317 |
Q |
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| T |
27570880 |
gtaatttcttcgaattgacaatgcagctaatatacatctaccatttgaatatatatcagatttatgtgcaacttgtaaagcttgtgtaggacctaattgt |
27570781 |
T |
|
| Q |
318 |
tagcagctaagagacagtgttagg |
341 |
Q |
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| T |
27570780 |
tagcagctaagagacagtgttagg |
27570757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 165 - 321
Target Start/End: Original strand, 27419680 - 27419832
Alignment:
| Q |
165 |
ttgcattttgttataactaatccaatggtagacatgctctcgacatctcacatgtaatttcttcgaattgacaatgcagctaatatacatctaccatttg |
264 |
Q |
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| T |
27419680 |
ttgcatttgggtatagataatccaattgtagacatgctttagacatctcacatgt---ttcttctaattgacattgcagcaaatatacatctaccaactg |
27419776 |
T |
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| Q |
265 |
aatatatatcagatttatgtgcaacttgtaaagcttgtgtaggacctaattgttagc |
321 |
Q |
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| T |
27419777 |
aatatatatcatatttatgtgaaacttat-aaggttgtgtaggacctgattgatagc |
27419832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 52 - 168
Target Start/End: Original strand, 27425216 - 27425332
Alignment:
| Q |
52 |
ttgtaaatcatgagtaggacctgaattatagatcagaaacagtgttaggaggcaagaagagaaccaatattaaacgcaagatcacaaacgactatgaacc |
151 |
Q |
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||||||| | || ||||||||||| |||||| |||||| ||||||||||||| || | |||||| |||||| ||| ||||||||||||| || | ||||| |
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| T |
27425216 |
ttgtaaagcttgcgtaggacctgatttatagttcagaagcagtgttaggaggaaaaacgagaacaaatattgaacacaagatcacaaaccaccaggaacc |
27425315 |
T |
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| Q |
152 |
acgttttatatttttgc |
168 |
Q |
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| T |
27425316 |
acaatttatatttttgc |
27425332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 39 - 135
Target Start/End: Original strand, 27414960 - 27415055
Alignment:
| Q |
39 |
atatatctgcaatttgtaaatcatgagtaggacctgaattatagatcagaaacagtgttaggaggcaagaagagaaccaatattaaacgcaagatca |
135 |
Q |
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| T |
27414960 |
atatatgtgcaacttgtaaagcttgagtaggacctgatttatagctcagaaacagtgtgaggagg-aaaaagagaaccaattttgaacacaagatca |
27415055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 169 - 311
Target Start/End: Original strand, 27425100 - 27425237
Alignment:
| Q |
169 |
attttgttataactaatccaatggtagacatgctctcgacatctcacatgtaatttcttcgaattgacaatgcagctaatatacatctaccatttgaata |
268 |
Q |
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|||||| |||| ||||| |||||||||||||| | | |||||||||||| ||||||| ||||||||| | | ||||||||||| ||||| | | | |
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| T |
27425100 |
attttggtatagctaatgcaatggtagacatggtttagacatctcacat---ctttcttctaattgacaaggaaactaatatacatataccagct--aaa |
27425194 |
T |
|
| Q |
269 |
tatatcagatttatgtgcaacttgtaaagcttgtgtaggacct |
311 |
Q |
| |
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|| |||| |||||||||| |||||||||||||| ||||||||| |
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| T |
27425195 |
taaatcatatttatgtgccacttgtaaagcttgcgtaggacct |
27425237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 89 - 170
Target Start/End: Original strand, 27422645 - 27422726
Alignment:
| Q |
89 |
aacagtgttaggaggcaagaagagaaccaatattaaacgcaagatcacaaacgactatgaaccacgttttatatttttgcat |
170 |
Q |
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|||||||| |||||| ||||||||||| ||||| ||| ||||| || | | |||||||||||| |||||||||||||||| |
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| T |
27422645 |
aacagtgtgaggaggagagaagagaaccgatattgaacacaagaacatgagccactatgaaccacattttatatttttgcat |
27422726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 105 - 162
Target Start/End: Complemental strand, 27566634 - 27566577
Alignment:
| Q |
105 |
aagaagagaaccaatattaaacgcaagatcacaaacgactatgaaccacgttttatat |
162 |
Q |
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||||||||||||||||| ||| ||||||||||||| ||||| |||||| |||||||| |
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| T |
27566634 |
aagaagagaaccaatatagaacacaagatcacaaaccactataaaccacattttatat |
27566577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 304
Target Start/End: Original strand, 27422579 - 27422641
Alignment:
| Q |
242 |
agctaatatacatctaccatttgaatatatatcagatttatgtgcaacttgtaaagcttgtgt |
304 |
Q |
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||||||||||||||||||| | |||| || |||||||| |||||||||||| | |||||||| |
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| T |
27422579 |
agctaatatacatctaccagctaaatacatctcagatttgtgtgcaacttgttaggcttgtgt |
27422641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 217
Target Start/End: Original strand, 27412020 - 27412061
Alignment:
| Q |
176 |
tataactaatccaatggtagacatgctctcgacatctcacat |
217 |
Q |
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|||| |||||||||||||||||||||| | |||||||||||| |
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| T |
27412020 |
tatagctaatccaatggtagacatgctttagacatctcacat |
27412061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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