View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11048_low_24 (Length: 305)

Name: NF11048_low_24
Description: NF11048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11048_low_24
NF11048_low_24
[»] chr8 (3 HSPs)
chr8 (8-289)||(34118007-34118289)
chr8 (230-289)||(2965387-2965446)
chr8 (233-283)||(40126141-40126192)
[»] chr3 (3 HSPs)
chr3 (151-283)||(7571496-7571634)
chr3 (230-288)||(6606929-6606988)
chr3 (230-283)||(12966150-12966203)
[»] scaffold0045 (1 HSPs)
scaffold0045 (231-288)||(82830-82887)
[»] chr2 (3 HSPs)
chr2 (230-283)||(25478573-25478626)
chr2 (230-289)||(30655387-30655445)
chr2 (233-283)||(30650695-30650746)
[»] chr7 (5 HSPs)
chr7 (62-121)||(21669139-21669198)
chr7 (230-274)||(19640024-19640068)
chr7 (174-217)||(21670896-21670939)
chr7 (236-289)||(8268063-8268116)
chr7 (234-279)||(21670968-21671013)
[»] chr5 (1 HSPs)
chr5 (230-288)||(23977596-23977655)
[»] chr4 (2 HSPs)
chr4 (230-285)||(32221381-32221436)
chr4 (230-274)||(33463621-33463666)
[»] chr1 (2 HSPs)
chr1 (234-283)||(51041732-51041781)
chr1 (236-289)||(10139859-10139912)
[»] chr6 (2 HSPs)
chr6 (230-284)||(25316833-25316887)
chr6 (230-284)||(26204327-26204381)


Alignment Details
Target: chr8 (Bit Score: 202; Significance: 1e-110; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 8 - 289
Target Start/End: Original strand, 34118007 - 34118289
Alignment:
Q  8 aagcataggcatttcatatggtgccgatttgaaaggcatcaaatgggcatgcgatttaagtttcatcccaaaaactttagttcatcaaataacaacctct 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| |||||||||||||| |||||    
T  34118007 aagcataggcatttcatatggtgccgatttgaaaggcatcaaatgggcatgcgatttaagtttcatccgaaaaaccttatttcatcaaataacagcctct 34118106  T
Q  108 catgatttcttttcggattcaaacctttcnnnnnnngttttgta-caaacttgtcaatttttaccattatcaatgataatcacgtacagttggagttttt 206  Q
    |||||||||||||| ||| ||||||||||       ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34118107 catgatttcttttccgatccaaacctttctttttttgttttataacaaacttgtcaatttttaccattatcaatgataatcacgtacagttggagttttt 34118206  T
Q  207 attcacaataagttagacctatgtatgtgaatttcttagtgttgttgttataacagcaaacacttcatcgtttcagttgaaag 289  Q
    ||||||||||||||||| || |||||||| |||||||||| | ||||||||||||| ||||||||||||||||||||||||||    
T  34118207 attcacaataagttagaactgtgtatgtggatttcttagtttcgttgttataacagtaaacacttcatcgtttcagttgaaag 34118289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 230 - 289
Target Start/End: Original strand, 2965387 - 2965446
Alignment:
Q  230 tatgtgaatttcttagtgttgttgttataacagcaaacacttcatcgtttcagttgaaag 289  Q
    ||||||||||| |||||||||||||||| ||| |||||||||||||||||||||| ||||    
T  2965387 tatgtgaattttttagtgttgttgttatgacaacaaacacttcatcgtttcagttaaaag 2965446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 233 - 283
Target Start/End: Complemental strand, 40126192 - 40126141
Alignment:
Q  233 gtgaatttcttagtgttgttg-ttataacagcaaacacttcatcgtttcagt 283  Q
    ||||||||||||||||||||| |||||||  ||| |||||||||||||||||    
T  40126192 gtgaatttcttagtgttgttgtttataactacaaccacttcatcgtttcagt 40126141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 76; Significance: 4e-35; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 151 - 283
Target Start/End: Complemental strand, 7571634 - 7571496
Alignment:
Q  151 acaaacttgtcaatttttaccattatcaatgataatcacgtacagttggagtttttattcacaataagtt------agacctatgtatgtgaatttctta 244  Q
    ||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| | ||      |||  |||||||||||||||||||    
T  7571634 acaaacttgtcaatttttatcattatcaatgataatcacgtacaattggagtttttattcacaatgactttaaaacagatttatgtatgtgaatttctta 7571535  T
Q  245 gtgttgttgttataacagcaaacacttcatcgtttcagt 283  Q
     |||||||||||||||| ||||| |||||| ||||||||    
T  7571534 atgttgttgttataacaacaaactcttcattgtttcagt 7571496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 230 - 288
Target Start/End: Complemental strand, 6606988 - 6606929
Alignment:
Q  230 tatgtgaatttc-ttagtgttgttgttataacagcaaacacttcatcgtttcagttgaaa 288  Q
    |||||||||||| |||||||||||||||||||| |||||||||||| |||||||||||||    
T  6606988 tatgtgaatttcgttagtgttgttgttataacaacaaacacttcattgtttcagttgaaa 6606929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 230 - 283
Target Start/End: Complemental strand, 12966203 - 12966150
Alignment:
Q  230 tatgtgaatttcttagtgttgttgttataacagcaaacacttcatcgtttcagt 283  Q
    ||||||||||||||| |||| | |||||||||||||||||||||||||||||||    
T  12966203 tatgtgaatttcttaatgttatcgttataacagcaaacacttcatcgtttcagt 12966150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 231 - 288
Target Start/End: Original strand, 82830 - 82887
Alignment:
Q  231 atgtgaatttcttagtgttgttgttataacagcaaacacttcatcgtttcagttgaaa 288  Q
    ||||||||||||||||||||||||||||||| |||||||||||| |||||||| ||||    
T  82830 atgtgaatttcttagtgttgttgttataacaacaaacacttcattgtttcagtggaaa 82887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 230 - 283
Target Start/End: Complemental strand, 25478626 - 25478573
Alignment:
Q  230 tatgtgaatttcttagtgttgttgttataacagcaaacacttcatcgtttcagt 283  Q
    |||||||||||||||||||||||||||||||| |||||||||| ||||||||||    
T  25478626 tatgtgaatttcttagtgttgttgttataacaacaaacacttcctcgtttcagt 25478573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 230 - 289
Target Start/End: Original strand, 30655387 - 30655445
Alignment:
Q  230 tatgtgaatttcttagtgttgttgttataacagcaaacacttcatcgtttcagttgaaag 289  Q
    |||||||||||||||||||||||||||||||| |||| ||||||| ||| |||| |||||    
T  30655387 tatgtgaatttcttagtgttgttgttataacaacaaa-acttcattgttacagtcgaaag 30655445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 233 - 283
Target Start/End: Original strand, 30650695 - 30650746
Alignment:
Q  233 gtgaatttcttagtgttgttg-ttataacagcaaacacttcatcgtttcagt 283  Q
    ||||||||||||||||||||| |||||||  ||| |||||||||||||||||    
T  30650695 gtgaatttcttagtgttgttgtttataactacaaccacttcatcgtttcagt 30650746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 62 - 121
Target Start/End: Original strand, 21669139 - 21669198
Alignment:
Q  62 tttaagtttcatcccaaaaactttagttcatcaaataacaacctctcatgatttcttttc 121  Q
    |||||||||||||| |||||| |||||||||||||||||||| || ||| ||||||||||    
T  21669139 tttaagtttcatccgaaaaacattagttcatcaaataacaacatcacattatttcttttc 21669198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 274
Target Start/End: Original strand, 19640024 - 19640068
Alignment:
Q  230 tatgtgaatttcttagtgttgttgttataacagcaaacacttcat 274  Q
    ||||||||||||||||||||||||| |||||| ||| ||||||||    
T  19640024 tatgtgaatttcttagtgttgttgtcataacaacaatcacttcat 19640068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 174 - 217
Target Start/End: Original strand, 21670896 - 21670939
Alignment:
Q  174 tatcaatgataatcacgtacagttggagtttttattcacaataa 217  Q
    ||||||||||||||| ||| | ||||||||||||||||||||||    
T  21670896 tatcaatgataatcaggtataattggagtttttattcacaataa 21670939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 289
Target Start/End: Original strand, 8268063 - 8268116
Alignment:
Q  236 aatttcttagtgttgttgttataacagcaaacacttcatcgtttcagttgaaag 289  Q
    ||||||||||||||||||||  |||| ||| ||||||||||||| ||| |||||    
T  8268063 aatttcttagtgttgttgttgaaacaacaagcacttcatcgttttagtcgaaag 8268116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 279
Target Start/End: Original strand, 21670968 - 21671013
Alignment:
Q  234 tgaatttcttagtgttgttgttataacagcaaacacttcatcgttt 279  Q
    ||||||| |||||||||||||||||||| ||| |||||||| ||||    
T  21670968 tgaattttttagtgttgttgttataacaacaagcacttcattgttt 21671013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 230 - 288
Target Start/End: Complemental strand, 23977655 - 23977596
Alignment:
Q  230 tatgtgaatttc-ttagtgttgttgttataacagcaaacacttcatcgtttcagttgaaa 288  Q
    |||||||||||| |||||||||||||||||||| |||||||||||| |||||||| ||||    
T  23977655 tatgtgaatttcgttagtgttgttgttataacaacaaacacttcattgtttcagtcgaaa 23977596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 230 - 285
Target Start/End: Complemental strand, 32221436 - 32221381
Alignment:
Q  230 tatgtgaatttcttagtgttgttgttataacagcaaacacttcatcgtttcagttg 285  Q
    |||||||||||||| ||||||| ||||||||| |||||||||| ||||||||||||    
T  32221436 tatgtgaatttctttgtgttgtcgttataacatcaaacacttcttcgtttcagttg 32221381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 230 - 274
Target Start/End: Complemental strand, 33463666 - 33463621
Alignment:
Q  230 tatgtgaatttcttagtgttg-ttgttataacagcaaacacttcat 274  Q
    ||||||||||||||||||||| ||||||||||| ||||||||||||    
T  33463666 tatgtgaatttcttagtgttgtttgttataacaacaaacacttcat 33463621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 234 - 283
Target Start/End: Complemental strand, 51041781 - 51041732
Alignment:
Q  234 tgaatttcttagtgttgttgttataacagcaaacacttcatcgtttcagt 283  Q
    |||||||| |||||||| |||||||||| |||||||||||| ||||||||    
T  51041781 tgaatttcatagtgttgctgttataacaacaaacacttcattgtttcagt 51041732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 289
Target Start/End: Original strand, 10139859 - 10139912
Alignment:
Q  236 aatttcttagtgttgttgttataacagcaaacacttcatcgtttcagttgaaag 289  Q
    ||||||||||||||||||||  |||| ||| |||||| |||||||||| |||||    
T  10139859 aatttcttagtgttgttgttgaaacaacaagcacttcgtcgtttcagtcgaaag 10139912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 284
Target Start/End: Complemental strand, 25316887 - 25316833
Alignment:
Q  230 tatgtgaatttcttagtgttgttgttataacagcaaacacttcatcgtttcagtt 284  Q
    ||||| |||||| ||| |||| |||||||||| |||||||||| |||||||||||    
T  25316887 tatgtaaatttcgtagagttgatgttataacaacaaacacttcctcgtttcagtt 25316833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 284
Target Start/End: Complemental strand, 26204381 - 26204327
Alignment:
Q  230 tatgtgaatttcttagtgttgttgttataacagcaaacacttcatcgtttcagtt 284  Q
    ||||| |||||| ||| |||| |||||||||| |||||||||| |||||||||||    
T  26204381 tatgtaaatttcgtagagttgatgttataacaacaaacacttcctcgtttcagtt 26204327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University