View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11048_low_28 (Length: 249)
Name: NF11048_low_28
Description: NF11048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11048_low_28 |
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| [»] chr4 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 12 - 249
Target Start/End: Original strand, 40007253 - 40007490
Alignment:
| Q |
12 |
aaaggcaaccaaacatatctagaatctcttaactcacttggattccatctatccgccatgaagataaacaaaccaggaaacctagttaatggaagcacaa |
111 |
Q |
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| T |
40007253 |
aaaggcaaccaaacatatctagaatctcttaactcacttggattccatctatccgccatgaagataaacaaaccaggaaacctagttaatggaagcacaa |
40007352 |
T |
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| Q |
112 |
aagtactttgtgcaagaaaagtcgaaactctaaacattttgtttccagcaacacatggatttccaattgtttcccatgtccctaagattgtctcagctga |
211 |
Q |
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| T |
40007353 |
aagtactttgtgcaagaaaagtcgaaactctaaacattttgtttccagcaacacatggatttccaattgtttcccatgtccctaagattgtctcagctga |
40007452 |
T |
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| Q |
212 |
atgaacaagtgcttcatttggtgcccatccagtgcaac |
249 |
Q |
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| T |
40007453 |
atgaacaagtgcttcatttggtgcccatccagtgcaac |
40007490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 11 - 249
Target Start/End: Complemental strand, 5353832 - 5353594
Alignment:
| Q |
11 |
caaaggcaaccaaacatatctagaatctcttaactcacttggattccatctatccgccatgaagataaacaaaccaggaaacctagttaatggaagcaca |
110 |
Q |
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| T |
5353832 |
caaaggtaaccatacatatctcgagtctcttaagtcagctggattccatcgatctgccatgaagatgaacgctccagggaaaccagaaatcggaagcacg |
5353733 |
T |
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| Q |
111 |
aaagtactttgtgcaagaaaagtcgaaactctaaacattttgtttccagcaacacatggatttccaattgtttcccatgtccctaagattgtctcagctg |
210 |
Q |
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| T |
5353732 |
aaagtgctctgagcaaagaaagttgtgagtctaaacattttgtttcctcccaagcatggatttcccattgtttcccacggccccatgattgactctgctg |
5353633 |
T |
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| Q |
211 |
aatgaacaagtgcttcatttggtgcccatccagtgcaac |
249 |
Q |
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| T |
5353632 |
catgcgccagtgcctcatttggggcccaccccgtgcaac |
5353594 |
T |
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