View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11048_low_3 (Length: 603)
Name: NF11048_low_3
Description: NF11048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11048_low_3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 416; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 19 - 594
Target Start/End: Original strand, 44341702 - 44342271
Alignment:
| Q |
19 |
atacctcaactaatcctgtgactcctgcttcttcaagggattctctgcaagctgcttcttctacagattcatcaagttcccatcctccctgttgagatca |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44341702 |
atacctcaactaatcctgtgactcctgcttcttcaagggattctctgcaagctgcttcttctacagattcatcaagttcccatcctccctgttgagatca |
44341801 |
T |
|
| Q |
119 |
atcaaatatatatataggatatgttaattaatattccaattaatgggaatgggggttccaaaagcaaactaat-----gtgcgagtaacactaaaatt-- |
211 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
44341802 |
atcaaatatata----ggatatgttaattaatattccaattaatgg-aatgggg-ttccaaaagcaaactaatataatgtgcgagtaacactgaaattaa |
44341895 |
T |
|
| Q |
212 |
--aatttaaaaaatgtggataccttaggaaacattagtctctgacttttctgcgaactaaccactagtacttccaattcgttgctcatattaccatctat |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
44341896 |
ttaatttaaaaaatgtggataccttaggaaacattagtctctgacttttctgcgaactaaccactagtacttccaattcgttgctcctattaccatctat |
44341995 |
T |
|
| Q |
310 |
gtcttctttatatctataaggtatgcatctgcaaaaacattatgaattat-gatatcaatattatgagttaattatttaaattattttgtcactaattta |
408 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||| || |||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44341996 |
gtcttctttatatctataaggtatgcatctgcacaaacatgatcaattataaatatcaatattatgagttaattatttaaattattttgtcactaattta |
44342095 |
T |
|
| Q |
409 |
tgttttttaatagtgaatcgagctaaagacatgattaaatatta--attaacaatgagtactgtttatgaggcatgtcacctaccaaatatttttgaaac |
506 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
44342096 |
tgttttttaatagtgaatcgagctaaagacatgattaaatattaatattaaca-------------atgaggcatgtcacctaccaaatatttttgaaac |
44342182 |
T |
|
| Q |
507 |
gtgaaaaatgaagtgaatagtgagaaattgaataagt-agtactactcaccctacaacttggcggccacccatgttgttatatctctgc |
594 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
44342183 |
gtgaaaaatgaagtgaatagtgagaaattgaaaaagtaagtactactcacccaacaacttggcggccacccatgttgttatatctctgc |
44342271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 63; Significance: 4e-27; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 39 - 109
Target Start/End: Complemental strand, 11455894 - 11455824
Alignment:
| Q |
39 |
actcctgcttcttcaagggattctctgcaagctgcttcttctacagattcatcaagttcccatcctccctg |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |
|
|
| T |
11455894 |
actcctgcttcttcaagggattctctgcaagctgcttcttctaaagattcatcaagttcccatccaccctg |
11455824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 263 - 324
Target Start/End: Complemental strand, 11455690 - 11455629
Alignment:
| Q |
263 |
gaactaaccactagtacttccaattcgttgctcatattaccatctatgtcttctttatatct |
324 |
Q |
| |
|
|||||||| || |||||||||||||| || | |||||| ||||| ||||||| ||||||||| |
|
|
| T |
11455690 |
gaactaacaacaagtacttccaattcattacccatattgccatcaatgtcttgtttatatct |
11455629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University